Cla021829.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAGCTTTATCCAGAGGTCTCATTTCTCGTCTTCGTCTTCTCTCGATCAATTCCGGCACTTCTCATACAAGTATTTCTTCTTCTTCTTCAAGGACAAATGCGTCTTGTTACTATTTCGCCCGTGCTTTCAGTACCCAGGATTTGATCCAGGCCAGCGATGGGTCTTTGTCATCTTCTTCGATTATTGAAGCTAAACCTGGTGTTATGGCCCCTAACTCGAAGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGATACCCGTCACTGTGCTCTGGGTTGATGATAATATTGTTTCACAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTCCAGGTACTGTTCAAATCTCTTCTTCTCATTTTTATTCCGTTAGTGGAGTATTTATTATTATTTTTAGTTGTCGTTGCTACTTAGATGAAATTAGGAGCATGACTGAAAACTAGAAAACCGACATTTCTTGCCTTGGCATTGTTAGTTTCTATCTCGCAGCCGTAGAACCAAAGAAAGCAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAATGAAATGGGATTTTGGCTTAATGATGTTGAGGAGTCTATTTTTGGCCTAATGATATTCTTTTGGACTGGGGTCCTTGTCTGTAGTTAGTGTCGAACTCTCTGTTTTTGTTGGACCTTTTTTTTTTTTTTTGAGCTCTTGTATATTCTTTCACTTGTCTCAATGTAGGTGTGGTTCCTTACTGATATATATTCTCTTACGTGAGAGGGATTTGAAGCTGTTGTTTTGGCTTCCCACACTTTCAATTCCATGGGTTTTGTTATTATACTGAACAGAACTGTTGCACATTGTTGTTTTGGACCAGAATTTCACCAGCTCCTATCATCTCATCACTTCCATCCATACACTTAGCTAGACATAACCATTTGTGGCTTTTTAAATTACAATAACTGTGGTATTGAGGTTGATGGTTGTACTCCTTGCATCATGTTCATGGCCAATCCCACTAATCTTCGGAAGATTTTCACCCACCCAATACTAACTTTGAAAGACAACTAGAGTTTTAGATATTGGTAAAATTTATACCTGGTGTTGATTTCACTCTTTCTAAAGAAAATACCAATTGTCTCCTCCATTAAACCATATGTTTAGGGTTCTTTTTTCTTTTTCAGTTCTTACATATTTTATTTCCTACAACTTGAATTTATTGACCAAAGGTGCTATGGTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCTGAGTTAGGCCATTTTAGGGCTCAAGGTGTTCCATTAAAAAGGAAATTGAAGGAGTTCCCGGTGTCAGAAGATGCACTTCTTCCAGTTGGTACAGCAATTGGCGTTCGTCATTTTGTTCCTGGACAGTATGTTGATGTGACAGGAATAACTACAGGGAAAGGTTTTCAGGTGAATCCATTGAACCATTTTTTTTTTTGATAAGAAACAATTTCATTGATGAATGAAATATCCAAAGATTCATTCAATTCCTTATATTTGGCATTATGGTTAAGTCAGTTATGTATCAAAATTACTCAAACAGTAAAATGTTATCGTGGGAACATTGACTCATATAAATGTGTCTCTCTCTGAGTTTAGGTCAAAGTACCAATTAAAAGCTGTTTAATCATCAATGACAACTGAATGAACAGATCTATGAAATTGAACTGCAATAAGTGATAACTGTAAACTGGGCGCGTTTAAAAAACATTGTTGGTTCCTTTTCTCTTTCTTCCTTGGCATTGACATTTCTAGTCAATTATGTTCATCAACAGTATTCTGTATGTACTGATATTTCTTCCAGGGATTCTCAAATATGCTATTTTTAATCGTGGTAGCACTGCATAATGTGATATCAAGGACATGGACTATTGGCCTTTGCATCAACTTCAAGCAATACTGATGATGTCAGCCTTGTTATGTTTAACTACCCACAACTTTCTTTGATGTGCAACTTACAACTCAAACTTTAACTTATAGAGCAAGTCCAATCCAATTAAAGTATCAAGTTACATCAAATGAACATATAGGTGTAAGCGATCATATCTTTTAAAACAAAAACCACCCAAATAACAAAGAATGCGAAAACCACAATAGTAGAGATCTGTAGTTCAAAACTCAAGTGAACAACCTCATGGTATCCTACTAATAACTAAACTCCAAAATCTAAAATGTCCATTGAAGAGTCAAAATGAGAGTTTTAGCAGAAACAATTATTGGACAAGTTATGTATCTTGTTTGTCATTGTCAGATTCCAATTTGTATCATTGCAATCCTTACTTTGGGTTATGGGCATTATAATAGATTTAGTAAGCAGTAAGCAAATATTTACATGATTCTCAAACATAAGCATGCTTAATTACCTGACTTGCTGCATGGTCTGCAAGATACAATTTAACCATCAAAGTTACACCGAGATATACGTGTTTATCATAAGATAACACGAACAATTTCTCGATTAGATTATGTGCATCCTGGAGACAAAAATAATAAAAAAAACACAATTCATATATATAAGCATACAGAAAAAAAAATATATAAGGGAGCTAACCCCTTTGAAAGCTGTGATCTTTGCTTTGTCTTCTTTCATGTTTGTGCTAATTTGGCTAATATCAAGTTGTATATTTGTGTCCTGAAAATTTTTCATGAGATCTTGAATAATCATAACAAAATTGTTTCCTTACCTTGTGTAAATGGTATAAAATATTTTCCATGAAAACAATGTCTCTCATTGCTAATCCTTTTTCTAATTGTGCTCAGGGAGTGATGAAAAGGCATGGTTTTTCAGGAATGCNNNNNNNNNNNNNNNNNGCCGGCATCCCACGGAGCATCACTATCCCATAGAAGTGGTGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTGCGTTTATCTTTCCTTGGTGGTATTCATTTTTATGATTGAGTGGTATCTTGGTTCTTCATTGTACTTTAGAGCTGCCTGAAACTCACAATTGAGATAGTAGAGAAGTTGTAGTAGTATATACCGGTAGCCTACTAGGTCGCTTCTGATTCTCAGAGTATTGCAAGGCTCCTGAATGAATGGTAATTTCATAGAAGAGAAATAAGAATTGACTGGGAGCATATAGTTACAAAACAAGTATGAATAACTTGCATGGTGAAAGTTTATTCACATAATTCCACCCTGGACAGTTTACGGATGTCACTCTGCTTGTGGAATGAATTAGTATCGAGTAACATGTGGAAATTTTCATTGGTTACAATCTTGAAAATAATATTCTTTCTGTTGGTCTATTCCTGGTGAAGCTTTAATATTTACGAAGTTTGAATAGCCTTATACTCTTGAACCCTCTTTCAAATACTGACCTGTTATTCTACAGTTCCGTGATTCAATAGAATATACTTGGAGTTCTGTCAGATTTGCTTTGCATAGGGAACCGTGGAAACTTTTATATCGAATCTTAGAAGCTTGTCCCTGTTTCTAAATAACAGAAAAAAGAAAATCCAAAGTGTGGAATAATTTTTTATGATCTGTTAATAGTGAGTTCTAGTCCGTTTTCATTGTATTCCATGTAATTTATGATAGTGAGAAACATGCGGTTATTTTGCAGGTCTTCAAAGGTAGAAAGATGGCTGGGCGCATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGATATACAAAATTGATCCTGCAAGAAACTTGATATGGGTGAGAGGACAAGTAAGTTTCTTCTAAAACCAAATTTCAAACTCTTGATCTGATCCTTATACTTGAGTCCTTGTTATATACATCAATATCATATACTCTTGGGACATCATGGTCTGAGGCTTTTGCTGCCCATAACTCCACCTTTTCTTTAGGTCCCTGGCACCGAAGGAAACTTTGTATTTATAAAGGATGCTGTCTACAAGAAACTCAATAAGTCGGTTCTTCCATTTCCTACGTACTTTGCAGCTGACAACGAGGACACAGAGAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGGTTGGAGATTGA ATGTCAGCTTTATCCAGAGGTCTCATTTCTCGTCTTCGTCTTCTCTCGATCAATTCCGGCACTTCTCATACAAGTATTTCTTCTTCTTCTTCAAGGACAAATGCGTCTTGTTACTATTTCGCCCGTGCTTTCAGTACCCAGGATTTGATCCAGGCCAGCGATGGGTCTTTGTCATCTTCTTCGATTATTGAAGCTAAACCTGGTGTTATGGCCCCTAACTCGAAGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGATACCCGTCACTGTGCTCTGGGTTGATGATAATATTGTTTCACAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCTGAGTTAGGCCATTTTAGGGCTCAAGGTGTTCCATTAAAAAGGAAATTGAAGGAGTTCCCGGTGTCAGAAGATGCACTTCTTCCAGTTGGTACAGCAATTGGCGTTCGTCATTTTGTTCCTGGACAGTATGTTGATGTGACAGGAATAACTACAGGGAAAGGTTTTCAGGAATGCNNNNNNNNNNNNNNNNNGCCGGCATCCCACGGAGCATCACTATCCCATAGAAGTGGTGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTCTTCAAAGGTAGAAAGATGGCTGGGCGCATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGATATACAAAATTGATCCTGCAAGAAACTTGATATGGGTGAGAGGACAAGTCCCTGGCACCGAAGGAAACTTTGTATTTATAAAGGATGCTGTCTACAAGAAACTCAATAAGTCGGTTCTTCCATTTCCTACGTACTTTGCAGCTGACAACGAGGACACAGAGAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGGTTGGAGATTGA ATGTCAGCTTTATCCAGAGGTCTCATTTCTCGTCTTCGTCTTCTCTCGATCAATTCCGGCACTTCTCATACAAGTATTTCTTCTTCTTCTTCAAGGACAAATGCGTCTTGTTACTATTTCGCCCGTGCTTTCAGTACCCAGGATTTGATCCAGGCCAGCGATGGGTCTTTGTCATCTTCTTCGATTATTGAAGCTAAACCTGGTGTTATGGCCCCTAACTCGAAGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGATACCCGTCACTGTGCTCTGGGTTGATGATAATATTGTTTCACAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCTGAGTTAGGCCATTTTAGGGCTCAAGGTGTTCCATTAAAAAGGAAATTGAAGGAGTTCCCGGTGTCAGAAGATGCACTTCTTCCAGTTGGTACAGCAATTGGCGTTCGTCATTTTGTTCCTGGACAGTATGTTGATGTGACAGGAATAACTACAGGGAAAGGTTTTCAGGAATGCNNNNNNNNNNNNNNNNNGCCGGCATCCCACGGAGCATCACTATCCCATAGAAGTGGTGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTCTTCAAAGGTAGAAAGATGGCTGGGCGCATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGATATACAAAATTGATCCTGCAAGAAACTTGATATGGGTGAGAGGACAAGTCCCTGGCACCGAAGGAAACTTTGTATTTATAAAGGATGCTGTCTACAAGAAACTCAATAAGTCGGTTCTTCCATTTCCTACGTACTTTGCAGCTGACAACGAGGACACAGAGAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGGTTGGAGATTGA MSALSRGLISRLRLLSINSGTSHTSISSSSSRTNASCYYFARAFSTQDLIQASDGSLSSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPGQYVDVTGITTGKGFQECXXXXXXPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFPTYFAADNEDTEKLEPLVADLGEVDPFMVGD
BLAST of Cla021829 vs. Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1) HSP 1 Score: 450.3 bits (1157), Expect = 1.8e-125 Identity = 231/328 (70.43%), Postives = 263/328 (80.18%), Query Frame = 1
BLAST of Cla021829 vs. Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rplC PE=3 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 2.4e-53 Identity = 115/238 (48.32%), Postives = 151/238 (63.45%), Query Frame = 1
BLAST of Cla021829 vs. Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / F199) GN=rplC PE=3 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 5.0e-51 Identity = 108/231 (46.75%), Postives = 151/231 (65.37%), Query Frame = 1
BLAST of Cla021829 vs. Swiss-Prot
Match: RL3_MAGSA (50S ribosomal protein L3 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplC PE=3 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 2.5e-50 Identity = 107/219 (48.86%), Postives = 141/219 (64.38%), Query Frame = 1
BLAST of Cla021829 vs. Swiss-Prot
Match: RL3_METNO (50S ribosomal protein L3 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplC PE=3 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 3.2e-50 Identity = 110/222 (49.55%), Postives = 139/222 (62.61%), Query Frame = 1
BLAST of Cla021829 vs. TrEMBL
Match: A0A0A0LAV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1) HSP 1 Score: 559.3 bits (1440), Expect = 3.0e-156 Identity = 283/328 (86.28%), Postives = 295/328 (89.94%), Query Frame = 1
BLAST of Cla021829 vs. TrEMBL
Match: E5GC40_CUCME (50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1) HSP 1 Score: 558.5 bits (1438), Expect = 5.2e-156 Identity = 281/328 (85.67%), Postives = 298/328 (90.85%), Query Frame = 1
BLAST of Cla021829 vs. TrEMBL
Match: M5XEE9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1) HSP 1 Score: 484.6 bits (1246), Expect = 9.5e-134 Identity = 241/327 (73.70%), Postives = 280/327 (85.63%), Query Frame = 1
BLAST of Cla021829 vs. TrEMBL
Match: A9PFR0_POPTR (50S ribosomal protein L3-2 OS=Populus trichocarpa GN=POPTR_0008s21180g PE=2 SV=1) HSP 1 Score: 465.3 bits (1196), Expect = 6.0e-128 Identity = 239/326 (73.31%), Postives = 263/326 (80.67%), Query Frame = 1
BLAST of Cla021829 vs. TrEMBL
Match: D7T692_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00810 PE=3 SV=1) HSP 1 Score: 464.9 bits (1195), Expect = 7.8e-128 Identity = 236/324 (72.84%), Postives = 258/324 (79.63%), Query Frame = 1
BLAST of Cla021829 vs. NCBI nr
Match: gi|449459792|ref|XP_004147630.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus]) HSP 1 Score: 559.3 bits (1440), Expect = 4.4e-156 Identity = 283/328 (86.28%), Postives = 295/328 (89.94%), Query Frame = 1
BLAST of Cla021829 vs. NCBI nr
Match: gi|659077038|ref|XP_008438999.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo]) HSP 1 Score: 558.5 bits (1438), Expect = 7.4e-156 Identity = 281/328 (85.67%), Postives = 298/328 (90.85%), Query Frame = 1
BLAST of Cla021829 vs. NCBI nr
Match: gi|1009163611|ref|XP_015900059.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 489.2 bits (1258), Expect = 5.5e-135 Identity = 237/325 (72.92%), Postives = 282/325 (86.77%), Query Frame = 1
BLAST of Cla021829 vs. NCBI nr
Match: gi|645233773|ref|XP_008223504.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume]) HSP 1 Score: 485.3 bits (1248), Expect = 8.0e-134 Identity = 239/324 (73.77%), Postives = 277/324 (85.49%), Query Frame = 1
BLAST of Cla021829 vs. NCBI nr
Match: gi|596145900|ref|XP_007222647.1| (hypothetical protein PRUPE_ppa008555mg [Prunus persica]) HSP 1 Score: 484.6 bits (1246), Expect = 1.4e-133 Identity = 241/327 (73.70%), Postives = 280/327 (85.63%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
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