Cla021108.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACCTGATGACTTTCCAAGCTTTGTCAGAGAAGGTATGGATCATGCTGCTATTTCATAGCTTTATCAGGGTATCTTCAAGGCATTTGCTTTCTAAATGTAACTCTGATGTCTTTCCTGAAAAGAACAGAGAGTAAAATGTAAAATAAAGTCAAATGTATATAAAAAATTACAGATTTTCTAATGTGTGGCTCAGGTTTCGAGGTTAAGGTAATAGCACCAGAGACCTATGTTAAACGTGACTCTGGGCTCATATATTGGGATATCGAAGTTGGTAATGGTGATTGCCCCAAGGATGGTCAGCAGGTTTTATTTTACAACTACAATATCTTTTCTTCAATTTTCTTACAGAATCAGGATTTATCTTTTAGTGTTGTTGTTCAAAGTGCCCCTATACTGTGAAATGAAGTATTAGCATTCTTATTAAGCCTTAACTTTGGCATCTGTCACATGTTTCTATCCTCAGACGATATCAAGGGTTAGAAGAGAGTTTAGCATATGCAGTTCAATATTGTTTGGCTTGCCCATTTGTTTGTCACATTTTAAGATTGGCACCTTAAAGATTATTCATGTAAGAAATCCTAGGAGGCTAAATGATACTTGGTGAAAATTCACTTATAATTCTCAACCGATTGTTGTTCCATTGATGACTACTTTGTATACGGATCTCAGAAGCTTAATAAAAATGCTATATGCACGTGCACCTTTTATGATAACAGCATGACTTAGAATTGGTTAACACAAGATGATTTTAATTCGGATACATAGTTTAGTAATCAGGTCTCTCTGAAAGACTAAGCTGAGTTTGAGGGGTGGAATTTCCAGGAACTTCAGAATGATCAATTGATCTCTGGAAATGTATGAATAATGTTTCTTGGATTCACCTGAATAACTGTAAGAATAAATCAAATGTTGTTGGTAAAAATAATTCACCAACCTTTATATAAACTACTGATTTTGTAATAAGTGATCAATATTTAATTTTTTGTTGAATGTTTTTGACATCAGTGGAGTTTTCTGGTGTACATTGTGACTGTGAAGGTCCTTTCAGGTGATCTTTCACTATGTCGGCTATAATGAATCTGGTCGTCGAATTGACAGCACATACTTACAGGGTTCTCCTGCCAGAATCCGTGTGGGCACTAATGCGTTGGTCCCAGGTAGTTAAATTACGCCCCATCACCACACACACCCACACAAAAAAGGGAATAAAACACTCACCAATCTTGTAAAATCAAGAAGAGATTGACTTACAGTTGAAAATAATCAGATAGCATCTGAAAGAGAAATATTGTAGGATTTGAGGAAGGAATTCGAGGCATGAGACCAGGGGGAAAGAGGAGAATAATAATTCCACCAGAACTTGGACCACCTGTGAGTTCTCAAGCATATGATTATTGCTTCAGTTTTATACCAACATCTTAAATTTCTTGTAACTGATTGTTATATATGCAGCAATTTTTAATCAAGCAAGGAAAGACCACCCATAATGATCTCCCATTTGCTGCAGTTGTATTTGCCTGTCATATAATTCATCTCCAGCTAGACAATCCTCTATCTTTTACCATGAGATTGTTTGTTTATATCAGTATAGAAAATTAAACGACGTTTTCTTGCTTAGCAGAAATCTAGGAACTCAATAGGCAAGAGCACACTAATATTGGAGAAGAACATACTAACTTGGGGCAGATTAGATAGTCGCTCACTCAAGATAAGGGAGTAATATAATGGAGGAACTCCAGCAGGCATTGGCAAATAAGTTGAACTAAATAAGAGGACAATAATAGTAAACGTACAACAGGTGAAAGGAAATCAACCCAAGAAGCAATAAGATTACAATAATTTCCTCAAACAAGATTTAATAAAAAAAAGAAAAGAAACAATAGTTGCAAAAAGTTATTATGGAAAAAAAAACCTTCAAAGTATAGGAGTAATTGATTGTGAAAACTGAAAAGCCTCTGAAATACACCCAGAAAACCCTCAAAACTTGGTACTCTCTAAAACTTCCCCCCATTTTTTACAATATAAGGTTCTGTGTTTTCTTTCAGAGCGAATTTCCAGAGAATGGACCTTACTAATCCAGAAAACCTTAGTTCTATATTTAAACCAGTGACCACAGAGAAGATATTCTAAAAATCTCGAAGCTTGTTGGAGAAGCACTGCAATGGGTATAATTCCTTTCGGAGTTTATTTGAAGATCTCTTCATGTAGGGGCATTGGAAAAACAGGCTCTCTGGATCTTCATTCTCAGAAGACATACTAATATGGAGAAAGGCCAAAGAAAGGAATGACCTTCCAATCAGTCCTGTTGACTCCTCCTAATGTTAAGGGCCAGATGAAGAATTCAATATCTTTAGGATTTCTTTCTAAATTGAAAATCATTGGGGATAGCTTTGGGTCAGACCACTGAGGTTGCTATTCTTGATTGACAAAACTACCATTTAATGAATTAAAAAAAAAATCTTGTTATTCAGAGATCCACACATCTTCCCTAGAATAAATATTGTCACCCTTTCCTGCCTTTATAGGAAAGTAAAGTTTCACGAAGATGGTTATTCGATAATGAGTCTCCTATGACTTTTTTACTTTGGACCTCTTCTTTTGGCACAAGCAATATCTCTTAAGAACCTCATACTTGCAACCTCATATTTGCATCGGTAGAGTTCTTTAATGCACTCTCTTGTGAAAAAATTTGTACCATTTTGATGCAACAGCCACTATTTTCTGCATCAAATTATCGTAAACCTAAACCTCCTGAGAGCAGATGAAGAACTGAAGTCCATTGAATTAAGTGAATTCCTCCTTCAGTACATAACCTCCTTTGCAGTCATACTCCTTGGGTACATCCTTTTTGGAACAAATGAAACTTCTTTTTAAATACATATAATCTGACGTATCTTTCTCGCAAGTAGTACGAATGGGAAGTTTGTGATTAAATTCAAAGAAACCTGCAGATTGGGCATGATACGAGAGCATATTGCCCTGTCTTAGAGCCACAAACTCGCTCTTTGTCCATTCTTATCTGCCAGCCTCTGAAGCTGGATTCTGGTAGTTTTCTGCTCCACTTATTTTGTGCATTTCTTCCATGCAAGTAAGACAAAGGAGGAATTCTGGATCTCAGTTATCTAATCAGATATGCAGATAAACTTTATTGTTTTGTCTTGGAGTACAATTGTCTTCACCGTTCCCATATCTTGAAAAACTTATGGATACCCATGTCTTACTGCTTTAAGCTGAAAAGGCAGAATGCTCGCAGCAATGTTCACTTGTCTGCTTACCTTGGTGGTCACCATTTTTTATATTTCTGTGACTAATGTGATATCTGATGATTTATCTCAATTGATTTTGACTTTTGATTATCTACAGGTGGGGCCTTCCACATTTTTCAGCTCAAAGCAGTTTGAAGTCTTTGATGTGGAACTGTTAAGCGTCCAGGATTGTCAGAGGAGGACAATAGCCTTTTACTCTGATATTGTTTGCAACTAG ATGCACCTGATGACTTTCCAAGCTTTGTCAGAGAAGGTATGGATCATGCTGCTATTTCATAGCTTTATCAGGGTATCTTCAAGGCATTTGCTTTCTAAATGTTTCGAGGTTAAGGTAATAGCACCAGAGACCTATGTTAAACGTGACTCTGGGCTCATATATTGGGATATCGAAGTTGGTAATGGTGATTGCCCCAAGGATGGTCAGCAGGTGATCTTTCACTATGTCGGCTATAATGAATCTGGTCGTCGAATTGACAGCACATACTTACAGGGTTCTCCTGCCAGAATCCGTGTGGGCACTAATGCGTTGGTCCCAGGATTTGAGGAAGGAATTCGAGGCATGAGACCAGGGGGAAAGAGGAGAATAATAATTCCACCAGAACTTGGACCACCTGTGGGGCCTTCCACATTTTTCAGCTCAAAGCAGTTTGAAGTCTTTGATGTGGAACTGTTAAGCGTCCAGGATTGTCAGAGGAGGACAATAGCCTTTTACTCTGATATTGTTTGCAACTAG ATGCACCTGATGACTTTCCAAGCTTTGTCAGAGAAGGTATGGATCATGCTGCTATTTCATAGCTTTATCAGGGTATCTTCAAGGCATTTGCTTTCTAAATGTTTCGAGGTTAAGGTAATAGCACCAGAGACCTATGTTAAACGTGACTCTGGGCTCATATATTGGGATATCGAAGTTGGTAATGGTGATTGCCCCAAGGATGGTCAGCAGGTGATCTTTCACTATGTCGGCTATAATGAATCTGGTCGTCGAATTGACAGCACATACTTACAGGGTTCTCCTGCCAGAATCCGTGTGGGCACTAATGCGTTGGTCCCAGGATTTGAGGAAGGAATTCGAGGCATGAGACCAGGGGGAAAGAGGAGAATAATAATTCCACCAGAACTTGGACCACCTGTGGGGCCTTCCACATTTTTCAGCTCAAAGCAGTTTGAAGTCTTTGATGTGGAACTGTTAAGCGTCCAGGATTGTCAGAGGAGGACAATAGCCTTTTACTCTGATATTGTTTGCAACTAG MHLMTFQALSEKVWIMLLFHSFIRVSSRHLLSKCFEVKVIAPETYVKRDSGLIYWDIEVGNGDCPKDGQQVIFHYVGYNESGRRIDSTYLQGSPARIRVGTNALVPGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIAFYSDIVCN
BLAST of Cla021108 vs. Swiss-Prot
Match: FK202_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 6.3e-61 Identity = 111/138 (80.43%), Postives = 122/138 (88.41%), Query Frame = 1
BLAST of Cla021108 vs. Swiss-Prot
Match: FKBA_ECOLI (FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia coli (strain K12) GN=fkpA PE=1 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14 Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
BLAST of Cla021108 vs. Swiss-Prot
Match: FKBA_ECO57 (FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia coli O157:H7 GN=fkpA PE=3 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14 Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
BLAST of Cla021108 vs. Swiss-Prot
Match: FKBA_ECOL6 (FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fkpA PE=3 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14 Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
BLAST of Cla021108 vs. Swiss-Prot
Match: FK171_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-1 PE=2 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 8.3e-13 Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = 1
BLAST of Cla021108 vs. TrEMBL
Match: A0A0A0L5Q7_CUCSA (Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_3G118090 PE=4 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 6.5e-73 Identity = 138/153 (90.20%), Postives = 141/153 (92.16%), Query Frame = 1
BLAST of Cla021108 vs. TrEMBL
Match: U5FNZ4_POPTR (Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa GN=POPTR_0014s04510g PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 5.3e-67 Identity = 126/153 (82.35%), Postives = 135/153 (88.24%), Query Frame = 1
BLAST of Cla021108 vs. TrEMBL
Match: U5FSF9_POPTR (Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa GN=POPTR_0014s04510g PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 5.3e-67 Identity = 126/153 (82.35%), Postives = 135/153 (88.24%), Query Frame = 1
BLAST of Cla021108 vs. TrEMBL
Match: B9MVA6_POPTR (Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa GN=POPTR_0014s04510g PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 5.3e-67 Identity = 126/153 (82.35%), Postives = 135/153 (88.24%), Query Frame = 1
BLAST of Cla021108 vs. TrEMBL
Match: U5FPF9_POPTR (Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa GN=POPTR_0014s04510g PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 5.3e-67 Identity = 126/153 (82.35%), Postives = 135/153 (88.24%), Query Frame = 1
BLAST of Cla021108 vs. NCBI nr
Match: gi|449431986|ref|XP_004133781.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis sativus]) HSP 1 Score: 281.6 bits (719), Expect = 9.4e-73 Identity = 138/153 (90.20%), Postives = 141/153 (92.16%), Query Frame = 1
BLAST of Cla021108 vs. NCBI nr
Match: gi|659074833|ref|XP_008437821.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]) HSP 1 Score: 279.3 bits (713), Expect = 4.6e-72 Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 1
BLAST of Cla021108 vs. NCBI nr
Match: gi|743787805|ref|XP_011031882.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic isoform X1 [Populus euphratica]) HSP 1 Score: 262.3 bits (669), Expect = 5.9e-67 Identity = 127/153 (83.01%), Postives = 135/153 (88.24%), Query Frame = 1
BLAST of Cla021108 vs. NCBI nr
Match: gi|743787809|ref|XP_011031892.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic isoform X2 [Populus euphratica]) HSP 1 Score: 262.3 bits (669), Expect = 5.9e-67 Identity = 127/153 (83.01%), Postives = 135/153 (88.24%), Query Frame = 1
BLAST of Cla021108 vs. NCBI nr
Match: gi|743787812|ref|XP_011031901.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic isoform X3 [Populus euphratica]) HSP 1 Score: 262.3 bits (669), Expect = 5.9e-67 Identity = 127/153 (83.01%), Postives = 135/153 (88.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
|