Bhi01M001480 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M001480
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 42887325 .. 42888082 (+)
Sequence length	758

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGACCCACCAAAATTCAATACCTTCCCATTAAACCTCATCTTTCTCTCTTCACCCTCACTCATCTCTCCGTTGGACTTTCTTCTTCAAACACCATGGCTGCACTGGCCACACCATCAATGGCAGCCATCATTCCTCTTCTTCTCCTCCTCATTCCTACCGGCTCCACCCTCAACGACACTGCTTGCGACGGCAGGCACCCGGAGAAATGCCACCTCGTCCGAGACAAGATCGCCGATTCCGAATTCATGATGGAATCCGAGATCGGACGGATGCTGTTGGACTTCAATAAATTCCAAACCCATCAAACCCAAACCCCCAACCAACCATCGGTGTCGTCCTGCGGTCGACCACCACGGTACGACAGTTGTGTTGGGGAGAAAAGGCAAACGCCGCCACAGGAAAAATGCGACATCTTCAAACGAGTGCCTTGTGGACAATGAAAGGGGAAAAAAACCAAGAAAAGGAAGATTGATATGTGGTTATAATTTTTCGGACGTGTCGTTAAATGGTGAATTTGGTTGTTGTGTTGTTCACTGAAAGAAAATAAAAATGTCTTGTGTAGTTGTGTGCTTAATTATAAATCATTTTTTTACTTTATGTTTTTTTTAAGGAATTTTACTCTCTATGTTTTGTTGCTGTTAATGAGGTTGGTTTTGTACATGTTTGTGGTTTGATTTTGTCCTAAGTTTCAGTAATATTACTCTGGAGTTACCATCAATGTTTATTAGAATGTTGAACGAAATTAAAAACCAGC

mRNA sequence

CAAAGACCCACCAAAATTCAATACCTTCCCATTAAACCTCATCTTTCTCTCTTCACCCTCACTCATCTCTCCGTTGGACTTTCTTCTTCAAACACCATGGCTGCACTGGCCACACCATCAATGGCAGCCATCATTCCTCTTCTTCTCCTCCTCATTCCTACCGGCTCCACCCTCAACGACACTGCTTGCGACGGCAGGCACCCGGAGAAATGCCACCTCGTCCGAGACAAGATCGCCGATTCCGAATTCATGATGGAATCCGAGATCGGACGGATGCTGTTGGACTTCAATAAATTCCAAACCCATCAAACCCAAACCCCCAACCAACCATCGGTGTCGTCCTGCGGTCGACCACCACGGTACGACAGTTGTGTTGGGGAGAAAAGGCAAACGCCGCCACAGGAAAAATGCGACATCTTCAAACGAGTGCCTTGTGGACAATGAAAGGGGAAAAAAACCAAGAAAAGGAAGATTGATATGTGGTTATAATTTTTCGGACGTGTCGTTAAATGGTGAATTTGGTTGTTGTGTTGTTCACTGAAAGAAAATAAAAATGTCTTGTGTAGTTGTGTGCTTAATTATAAATCATTTTTTTACTTTATGTTTTTTTTAAGGAATTTTACTCTCTATGTTTTGTTGCTGTTAATGAGGTTGGTTTTGTACATGTTTGTGGTTTGATTTTGTCCTAAGTTTCAGTAATATTACTCTGGAGTTACCATCAATGTTTATTAGAATGTTGAACGAAATTAAAAACCAGC

Coding sequence (CDS)

CAAAGACCCACCAAAATTCAATACCTTCCCATTAAACCTCATCTTTCTCTCTTCACCCTCACTCATCTCTCCGTTGGACTTTCTTCTTCAAACACCATGGCTGCACTGGCCACACCATCAATGGCAGCCATCATTCCTCTTCTTCTCCTCCTCATTCCTACCGGCTCCACCCTCAACGACACTGCTTGCGACGGCAGGCACCCGGAGAAATGCCACCTCGTCCGAGACAAGATCGCCGATTCCGAATTCATGATGGAATCCGAGATCGGACGGATGCTGTTGGACTTCAATAAATTCCAAACCCATCAAACCCAAACCCCCAACCAACCATCGGTGTCGTCCTGCGGTCGACCACCACGGTACGACAGTTGTGTTGGGGAGAAAAGGCAAACGCCGCCACAGGAAAAATGCGACATCTTCAAACGAGTGCCTTGTGGACAATGA

Protein sequence

QRPTKIQYLPIKPHLSLFTLTHLSVGLSSSNTMAALATPSMAAIIPLLLLLIPTGSTLNDTACDGRHPEKCHLVRDKIADSEFMMESEIGRMLLDFNKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCDIFKRVPCGQ

Homology

[Close]

BLAST of Bhi01M001480 vs. TrEMBL
Match: tr|A0A0A0LCI8|A0A0A0LCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-24
Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 33  MAALATPSMAAIIPLLLLLIPTGSTLNDTA----CDGRHPEKCHLVRDKIADSEFMMESE 92
           MAAL+TPS+  II LLLLLIP+G T+NDTA    C+  H +KCHLVRD + D EFMMESE
Sbjct: 1   MAALSTPSIGTII-LLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 60

Query: 93  IGRML-LDFNKFQTHQTQTPNQPSV-SSCGRPPRYDSCVGEKRQTPPQEKCDIFKR 143
           +G ML ++++K+++  T+  N+  V   CGRPPRY+SC+G KR T  QEKC ++KR
Sbjct: 61  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of Bhi01M001480 vs. TrEMBL
Match: tr|A0A0A0KVZ2|A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 39  PSMAAIIPLLLLLIPT--GSTLNDTACDGRHPEKCHLVRDKIADSEFMMESEIGRMLLDF 98
           P+MA +I L LL  PT   +T+N+T  +  +  +  LV D+  DSEF+ME+E  RMLLDF
Sbjct: 8   PTMAILI-LTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETSRMLLDF 67

Query: 99  NKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCDIFKRV-PC 146
              QT  T  PN+ SV+ CGRPPRYDSC GE+RQ P  E CD+  R  PC
Sbjct: 68  QNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Bhi01M001480 vs. TrEMBL
Match: tr|A0A0A0KW62|A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.9e-14
Identity = 60/128 (46.88%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 25  VGLSSSNTMAA-LATPSMAAIIPLLLL-LIPTGSTLNDTA---CDGRHPEKCHLVRDKIA 84
           +G   SN+MAA L  PSMA +I +LLL  I + + +NDT    CD    E C LV D  +
Sbjct: 1   MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENC-LVGDLNS 60

Query: 85  DSEFMMESEIGRMLLD-FNKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCD 144
            SEF+M +E   ML+D F  FQT +    N+ SV  C RPPRYDSC+G KR  P  E C 
Sbjct: 61  HSEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCS 120

Query: 145 IFKRV-PC 146
              RV PC
Sbjct: 121 TLNRVNPC 127

[Close]

BLAST of Bhi01M001480 vs. TrEMBL
Match: tr|A0A0A0L711|A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 50/120 (41.67%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 32  TMAALATPSMAAIIPLLLLLIPT--GSTLNDTACDGRHPE---KCHLVRDKIADSEFMME 91
           T  AL  P  AA+  +L++LIPT  G  L        H       ++V ++   S F+ME
Sbjct: 3   TAPALMIP--AAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVME 62

Query: 92  SEIGRMLLDFNKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCDIFKRV-PC 146
           S I RML D   F+T  T    Q S   C RPPRYDSC+G KR TPP + C  F R  PC
Sbjct: 63  SHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Bhi01M001480 vs. TrEMBL
Match: tr|A0A0A0L9X5|A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-10
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 80  DSEFMMESEIGRMLLDFNKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCDI 139
           D++F+MES + R+L +  +F+T +T   N  SV +C RPPRYDSC+GE R  PP E CD 
Sbjct: 49  DTDFLMESHVSRILAEL-RFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDP 108

Query: 140 FKRV-PC 146
           + R  PC
Sbjct: 109 YNRANPC 114

[Close]

BLAST of Bhi01M001480 vs. NCBI nr
Match: KGN57776.1 (hypothetical protein Csa_3G298050 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 33  MAALATPSMAAIIPLLLLLIPTGSTLNDTA----CDGRHPEKCHLVRDKIADSEFMMESE 92
           MAAL+TPS+  II LLLLLIP+G T+NDTA    C+  H +KCHLVRD + D EFMMESE
Sbjct: 1   MAALSTPSIGTII-LLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 60

Query: 93  IGRML-LDFNKFQTHQTQTPNQPSV-SSCGRPPRYDSCVGEKRQTPPQEKCDIFKR 143
           +G ML ++++K+++  T+  N+  V   CGRPPRY+SC+G KR T  QEKC ++KR
Sbjct: 61  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of Bhi01M001480 vs. NCBI nr
Match: KGN53800.1 (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 39  PSMAAIIPLLLLLIPT--GSTLNDTACDGRHPEKCHLVRDKIADSEFMMESEIGRMLLDF 98
           P+MA +I L LL  PT   +T+N+T  +  +  +  LV D+  DSEF+ME+E  RMLLDF
Sbjct: 8   PTMAILI-LTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETSRMLLDF 67

Query: 99  NKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCDIFKRV-PC 146
              QT  T  PN+ SV+ CGRPPRYDSC GE+RQ P  E CD+  R  PC
Sbjct: 68  QNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Bhi01M001480 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 54/122 (44.26%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 33  MAALATPSMAAIIPLLLLLIPTGSTL--------NDTACDGRHPEKCHLVRDKIADSEFM 92
           MAA A    AA+  ++LLL PT S          NDT+  G+     +L+ D+  DSEF+
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGK-----YLIGDQDLDSEFL 60

Query: 93  MESEIGRMLLDFNKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCDIFKR-V 146
           MES I R+L     FQT +T   N+ S   CGRPPRYDSC+G+K   PP E C  F R  
Sbjct: 61  MESHISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNN 117

[Close]

BLAST of Bhi01M001480 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 5.7e-14
Identity = 53/122 (43.44%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 33  MAALATPSMAAIIPLLLLLIPTGSTL--------NDTACDGRHPEKCHLVRDKIADSEFM 92
           MAA A    AA+  ++LLL PT S          NDT+  G+     +L+ D+  DSEF+
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGK-----YLIGDQDIDSEFL 60

Query: 93  MESEIGRMLLDFNKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCDIFKR-V 146
           MES I R+L     FQT +T   N+ S   C RPPRYDSC+G+K   PP E C  F R  
Sbjct: 61  MESHISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNN 117

[Close]

BLAST of Bhi01M001480 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 7.4e-14
Identity = 60/128 (46.88%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 25  VGLSSSNTMAA-LATPSMAAIIPLLLL-LIPTGSTLNDTA---CDGRHPEKCHLVRDKIA 84
           +G   SN+MAA L  PSMA +I +LLL  I + + +NDT    CD    E C LV D  +
Sbjct: 1   MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENC-LVGDLNS 60

Query: 85  DSEFMMESEIGRMLLD-FNKFQTHQTQTPNQPSVSSCGRPPRYDSCVGEKRQTPPQEKCD 144
            SEF+M +E   ML+D F  FQT +    N+ SV  C RPPRYDSC+G KR  P  E C 
Sbjct: 61  HSEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCS 120

Query: 145 IFKRV-PC 146
              RV PC
Sbjct: 121 TLNRVNPC 127

The following BLAST results are available for this feature:

BLAST of Bhi01M001480 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01M001480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01M001480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCI8\|A0A0A0LCI8_CUCSA	2.3e-24	56.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298050 PE=4 SV=1	[more]
tr\|A0A0A0KVZ2\|A0A0A0KVZ2_CUCSA	1.5e-18	50.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
tr\|A0A0A0KW62\|A0A0A0KW62_CUCSA	4.9e-14	46.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]
tr\|A0A0A0L711\|A0A0A0L711_CUCSA	3.5e-12	41.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]
tr\|A0A0A0L9X5\|A0A0A0L9X5_CUCSA	7.3e-10	49.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1	[more]

BLAST of Bhi01M001480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57776.1	3.5e-24	56.03	hypothetical protein Csa_3G298050 [Cucumis sativus]	[more]
KGN53800.1	2.2e-18	50.91	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
XP_022948338.1	1.1e-14	44.26	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
XP_022998105.1	5.7e-14	43.44	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
KGN53798.1	7.4e-14	46.88	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G001480	Bhi01G001480	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001480.exon1	Bhi01M001480.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M001480	cds.Bhi01M001480	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001480.utr3p1	Bhi01M001480.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M001480	Bhi01M001480-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..131