Bhi05M001693 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05M001693
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Eukaryotic translation initiation factor 3 subunit B
Location	chr5 : 60668901 .. 60669272 (-)
Sequence length	165

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGGAAGAAAAGGAGGTTTGAAGGGATCGAAGGAGGGAAATGGTTTTTAATACATAATAATGACAAGAGAACACCTTGTCTTTTGTCTCCTTTGCCTATTTGATTATGAATCATAAATTATTATGTGGACCTCTCTTCTTTTGCTCTAAAAGTTTCAATAATCACAAATTATGTTGTCGTGGAAGTATGATGCTAATTGCTATTTACTTCTGAACATTTCAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

mRNA sequence

ATGAGGAAGGAAGAAAAGGAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

Coding sequence (CDS)

ATGAGGAAGGAAGAAAAGGAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

Protein sequence

MRKEEKEENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKRQVSIL

Homology

[Close]

BLAST of Bhi05M001693 vs. Swiss-Prot
Match: sp|P56821|EIF3B_TOBAC (Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=4097 GN=TIF3B1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ +DTEV WNDAR LKPE VYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGNDTEVLWNDARQLKPELVYKR 211

[Close]

BLAST of Bhi05M001693 vs. Swiss-Prot
Match: sp|Q9C5Z1|EIF3B_ARATH (Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=3702 GN=TIF3B1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-10
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT EKA DQ V RS  DTEVFWND R   PEPV+KR
Sbjct: 166 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 207

[Close]

BLAST of Bhi05M001693 vs. TAIR10
Match: AT5G27640.2 (translation initiation factor 3B1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-11
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT EKA DQ V RS  DTEVFWND R   PEPV+KR
Sbjct: 192 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 233

[Close]

BLAST of Bhi05M001693 vs. TAIR10
Match: AT5G25780.1 (eukaryotic translation initiation factor 3B-2)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-11
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT +KA DQ V R   DTEV+WNDAR  KPEPV+KR
Sbjct: 167 ENLQKWLTDDKARDQLVIRFGHDTEVYWNDARQKKPEPVHKR 208

[Close]

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A1S3BIW9|A0A1S3BIW9_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103490196 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A1S3BJ74|A0A1S3BJ74_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103490196 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8  ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
          ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 27 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 68

[Close]

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A0A0K581|A0A0A0K581_CUCSA (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 GN=Csa_7G181640 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A1S3CES0|A0A1S3CES0_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103500082 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A0A0K4J9|A0A0A0K4J9_CUCSA (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 GN=Csa_7G281370 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05M001693 vs. NCBI nr
Match: XP_008447809.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 [Cucumis melo] >XP_008447810.1 PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05M001693 vs. NCBI nr
Match: XP_008447811.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8  ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
          ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 27 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 68

[Close]

BLAST of Bhi05M001693 vs. NCBI nr
Match: KGN44089.1 (hypothetical protein Csa_7G181640 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05M001693 vs. NCBI nr
Match: XP_004139759.2 (PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B-like [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05M001693 vs. NCBI nr
Match: XP_022932539.1 (eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata] >XP_022932540.1 eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

The following BLAST results are available for this feature:

BLAST of Bhi05M001693 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P56821\|EIF3B_TOBAC	8.6e-12	78.57	Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=409...	[more]
sp\|Q9C5Z1\|EIF3B_ARATH	3.6e-10	71.43	Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=...	[more]

BLAST of Bhi05M001693 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27640.2	2.0e-11	71.43	translation initiation factor 3B1	[more]
AT5G25780.1	3.4e-11	69.05	eukaryotic translation initiation factor 3B-2	[more]

BLAST of Bhi05M001693 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIW9\|A0A1S3BIW9_CUCME	5.8e-13	90.48	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A1S3BJ74\|A0A1S3BJ74_CUCME	5.8e-13	90.48	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0K581\|A0A0A0K581_CUCSA	5.8e-13	90.48	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 ...	[more]
tr\|A0A1S3CES0\|A0A1S3CES0_CUCME	1.3e-12	88.10	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0K4J9\|A0A0A0K4J9_CUCSA	1.3e-12	88.10	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 ...	[more]

BLAST of Bhi05M001693 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447809.1	8.7e-13	90.48	PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 ...	[more]
XP_008447811.1	8.7e-13	90.48	PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X2 ...	[more]
KGN44089.1	8.7e-13	90.48	hypothetical protein Csa_7G181640 [Cucumis sativus]	[more]
XP_004139759.2	8.7e-13	90.48	PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subun...	[more]
XP_022932539.1	8.7e-13	90.48	eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata] >...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0031369	translation initiation factor binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi05G001693	Bhi05G001693	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi05M001693.exon2	Bhi05M001693.exon2	exon
Bhi05M001693.exon1	Bhi05M001693.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi05M001693	cds.Bhi05M001693	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi05M001693	Bhi05M001693-protein	polypeptide