Bhi05G001693 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001693
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Eukaryotic translation initiation factor 3 subunit B
Location	chr5 : 60668901 .. 60669272 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGGAAGAAAAGGAGGTTTGAAGGGATCGAAGGAGGGAAATGGTTTTTAATACATAATAATGACAAGAGAACACCTTGTCTTTTGTCTCCTTTGCCTATTTGATTATGAATCATAAATTATTATGTGGACCTCTCTTCTTTTGCTCTAAAAGTTTCAATAATCACAAATTATGTTGTCGTGGAAGTATGATGCTAATTGCTATTTACTTCTGAACATTTCAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

mRNA sequence

ATGAGGAAGGAAGAAAAGGAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

Coding sequence (CDS)

ATGAGGAAGGAAGAAAAGGAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

Protein sequence

MRKEEKEENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKRQVSIL

Homology

[Close]

BLAST of Bhi05G001693 vs. Swiss-Prot
Match: sp|P56821|EIF3B_TOBAC (Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=4097 GN=TIF3B1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ +DTEV WNDAR LKPE VYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGNDTEVLWNDARQLKPELVYKR 211

[Close]

BLAST of Bhi05G001693 vs. Swiss-Prot
Match: sp|Q9C5Z1|EIF3B_ARATH (Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=3702 GN=TIF3B1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-10
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT EKA DQ V RS  DTEVFWND R   PEPV+KR
Sbjct: 166 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 207

[Close]

BLAST of Bhi05G001693 vs. TAIR10
Match: AT5G27640.2 (translation initiation factor 3B1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-11
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT EKA DQ V RS  DTEVFWND R   PEPV+KR
Sbjct: 192 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 233

[Close]

BLAST of Bhi05G001693 vs. TAIR10
Match: AT5G25780.1 (eukaryotic translation initiation factor 3B-2)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-11
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT +KA DQ V R   DTEV+WNDAR  KPEPV+KR
Sbjct: 167 ENLQKWLTDDKARDQLVIRFGHDTEVYWNDARQKKPEPVHKR 208

[Close]

BLAST of Bhi05G001693 vs. TrEMBL
Match: tr|A0A1S3BIW9|A0A1S3BIW9_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103490196 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05G001693 vs. TrEMBL
Match: tr|A0A1S3BJ74|A0A1S3BJ74_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103490196 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8  ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
          ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 27 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 68

[Close]

BLAST of Bhi05G001693 vs. TrEMBL
Match: tr|A0A0A0K581|A0A0A0K581_CUCSA (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 GN=Csa_7G181640 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05G001693 vs. TrEMBL
Match: tr|A0A1S3CES0|A0A1S3CES0_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103500082 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05G001693 vs. TrEMBL
Match: tr|A0A0A0K4J9|A0A0A0K4J9_CUCSA (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 GN=Csa_7G281370 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05G001693 vs. NCBI nr
Match: XP_008447809.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 [Cucumis melo] >XP_008447810.1 PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05G001693 vs. NCBI nr
Match: XP_008447811.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8  ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
          ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 27 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 68

[Close]

BLAST of Bhi05G001693 vs. NCBI nr
Match: KGN44089.1 (hypothetical protein Csa_7G181640 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05G001693 vs. NCBI nr
Match: XP_004139759.2 (PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B-like [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

[Close]

BLAST of Bhi05G001693 vs. NCBI nr
Match: XP_022932539.1 (eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata] >XP_022932540.1 eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

The following BLAST results are available for this feature:

BLAST of Bhi05G001693 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P56821\|EIF3B_TOBAC	8.6e-12	78.57	Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=409...	[more]
sp\|Q9C5Z1\|EIF3B_ARATH	3.6e-10	71.43	Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=...	[more]

BLAST of Bhi05G001693 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27640.2	2.0e-11	71.43	translation initiation factor 3B1	[more]
AT5G25780.1	3.4e-11	69.05	eukaryotic translation initiation factor 3B-2	[more]

BLAST of Bhi05G001693 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIW9\|A0A1S3BIW9_CUCME	5.8e-13	90.48	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A1S3BJ74\|A0A1S3BJ74_CUCME	5.8e-13	90.48	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0K581\|A0A0A0K581_CUCSA	5.8e-13	90.48	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 ...	[more]
tr\|A0A1S3CES0\|A0A1S3CES0_CUCME	1.3e-12	88.10	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0K4J9\|A0A0A0K4J9_CUCSA	1.3e-12	88.10	Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 ...	[more]

BLAST of Bhi05G001693 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447809.1	8.7e-13	90.48	PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 ...	[more]
XP_008447811.1	8.7e-13	90.48	PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X2 ...	[more]
KGN44089.1	8.7e-13	90.48	hypothetical protein Csa_7G181640 [Cucumis sativus]	[more]
XP_004139759.2	8.7e-13	90.48	PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subun...	[more]
XP_022932539.1	8.7e-13	90.48	eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata] >...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0031369	translation initiation factor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001693	Bhi05M001693	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001693	Cucumber (Gy14) v2	cgybwgoB636
Bhi05G001693	Cucurbita maxima (Rimu)	cmawgoB0117
Bhi05G001693	Cucurbita maxima (Rimu)	cmawgoB0657
Bhi05G001693	Cucurbita moschata (Rifu)	cmowgoB0109
Bhi05G001693	Cucurbita moschata (Rifu)	cmowgoB0658
Bhi05G001693	Cucurbita pepo (Zucchini)	cpewgoB0332
Bhi05G001693	Cucurbita pepo (Zucchini)	cpewgoB0844
Bhi05G001693	Wild cucumber (PI 183967)	cpiwgoB676
Bhi05G001693	Cucumber (Chinese Long) v3	cucwgoB690
Bhi05G001693	Cucumber (Chinese Long) v2	cuwgoB665
Bhi05G001693	Bottle gourd (USVL1VR-Ls)	lsiwgoB114
Bhi05G001693	Bottle gourd (USVL1VR-Ls)	lsiwgoB119
Bhi05G001693	Melon (DHL92) v3.6.1	medwgoB224
Bhi05G001693	Melon (DHL92) v3.5.1	mewgoB224
Bhi05G001693	Watermelon (Charleston Gray)	wcgwgoB586
Bhi05G001693	Watermelon (97103) v2	wgowmbB262
Bhi05G001693	Watermelon (97103) v1	wgowmB268