Bhi05M001693 (mRNA) Wax gourd

NameBhi05M001693
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionEukaryotic translation initiation factor 3 subunit B
Locationchr5 : 60668901 .. 60669272 (-)
Sequence length165
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGGAAGAAAAGGAGGTTTGAAGGGATCGAAGGAGGGAAATGGTTTTTAATACATAATAATGACAAGAGAACACCTTGTCTTTTGTCTCCTTTGCCTATTTGATTATGAATCATAAATTATTATGTGGACCTCTCTTCTTTTGCTCTAAAAGTTTCAATAATCACAAATTATGTTGTCGTGGAAGTATGATGCTAATTGCTATTTACTTCTGAACATTTCAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

mRNA sequence

ATGAGGAAGGAAGAAAAGGAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

Coding sequence (CDS)

ATGAGGAAGGAAGAAAAGGAGGAGAATCTTCAACAATGGCTAACTCATGAAAAAGCATGGGATCAGTTTGTTAACCGATCTAGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAAGTGAGTATCCTTTAG

Protein sequence

MRKEEKEENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKRQVSIL
BLAST of Bhi05M001693 vs. Swiss-Prot
Match: sp|P56821|EIF3B_TOBAC (Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=4097 GN=TIF3B1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ +DTEV WNDAR LKPE VYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGNDTEVLWNDARQLKPELVYKR 211

BLAST of Bhi05M001693 vs. Swiss-Prot
Match: sp|Q9C5Z1|EIF3B_ARATH (Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=3702 GN=TIF3B1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-10
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT EKA DQ V RS  DTEVFWND R   PEPV+KR
Sbjct: 166 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 207

BLAST of Bhi05M001693 vs. TAIR10
Match: AT5G27640.2 (translation initiation factor 3B1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-11
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT EKA DQ V RS  DTEVFWND R   PEPV+KR
Sbjct: 192 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 233

BLAST of Bhi05M001693 vs. TAIR10
Match: AT5G25780.1 (eukaryotic translation initiation factor 3B-2)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-11
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQ+WLT +KA DQ V R   DTEV+WNDAR  KPEPV+KR
Sbjct: 167 ENLQKWLTDDKARDQLVIRFGHDTEVYWNDARQKKPEPVHKR 208

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A1S3BIW9|A0A1S3BIW9_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103490196 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A1S3BJ74|A0A1S3BJ74_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103490196 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8  ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
          ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 27 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 68

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A0A0K581|A0A0A0K581_CUCSA (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 GN=Csa_7G181640 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A1S3CES0|A0A1S3CES0_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103500082 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKR 211

BLAST of Bhi05M001693 vs. TrEMBL
Match: tr|A0A0A0K4J9|A0A0A0K4J9_CUCSA (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 GN=Csa_7G281370 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV R+ SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKR 211

BLAST of Bhi05M001693 vs. NCBI nr
Match: XP_008447809.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 [Cucumis melo] >XP_008447810.1 PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

BLAST of Bhi05M001693 vs. NCBI nr
Match: XP_008447811.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8  ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
          ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 27 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 68

BLAST of Bhi05M001693 vs. NCBI nr
Match: KGN44089.1 (hypothetical protein Csa_7G181640 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

BLAST of Bhi05M001693 vs. NCBI nr
Match: XP_004139759.2 (PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B-like [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

BLAST of Bhi05M001693 vs. NCBI nr
Match: XP_022932539.1 (eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata] >XP_022932540.1 eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 8   ENLQQWLTHEKAWDQFVNRSSSDTEVFWNDARHLKPEPVYKR 50
           ENLQQWLT EKA DQFV RS SDTEVFWNDARHLKPEPVYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKR 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|P56821|EIF3B_TOBAC8.6e-1278.57Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=409... [more]
sp|Q9C5Z1|EIF3B_ARATH3.6e-1071.43Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=... [more]
Match NameE-valueIdentityDescription
AT5G27640.22.0e-1171.43translation initiation factor 3B1[more]
AT5G25780.13.4e-1169.05eukaryotic translation initiation factor 3B-2[more]
Match NameE-valueIdentityDescription
tr|A0A1S3BIW9|A0A1S3BIW9_CUCME5.8e-1390.48Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A1S3BJ74|A0A1S3BJ74_CUCME5.8e-1390.48Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A0A0K581|A0A0A0K581_CUCSA5.8e-1390.48Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 ... [more]
tr|A0A1S3CES0|A0A1S3CES0_CUCME1.3e-1288.10Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A0A0K4J9|A0A0A0K4J9_CUCSA1.3e-1288.10Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 ... [more]
Match NameE-valueIdentityDescription
XP_008447809.18.7e-1390.48PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 ... [more]
XP_008447811.18.7e-1390.48PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X2 ... [more]
KGN44089.18.7e-1390.48hypothetical protein Csa_7G181640 [Cucumis sativus][more]
XP_004139759.28.7e-1390.48PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subun... [more]
XP_022932539.18.7e-1390.48eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata] >... [more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001732 formation of cytoplasmic translation initiation complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0031369 translation initiation factor binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi05G001693Bhi05G001693gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi05M001693.exon2Bhi05M001693.exon2exon
Bhi05M001693.exon1Bhi05M001693.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi05M001693cds.Bhi05M001693CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi05M001693Bhi05M001693-proteinpolypeptide