BhiUN403M8 (mRNA) Wax gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCGAAATGCTTTAGGAATCCAAACAAGCTTCCGCCAATTCGACGCAAAATTTTGATTGCTAACCAAAAGAAAACCTTATCCTCTTTCCCTGCTCTCATCCATGGCGTCCGTCCCTGCTTCGCGCAGTGAGGGCAAAATGTAAGAGACGAGCCGACTGTGTTTCAGTTTCAGTGACAAACCCTAATGGCCGCCATTTCCGGATCTCTCAACCTTCCTCTTGCGCCGTCAAACCTTTCATCACCCCGCATTAAGGTACTCACCTCCCGATTGCAATTTTTTTTTTTGAGTTCTGTAAAAACCTTTTCAACTATAACTTCTTCGAATTATACCTAAACGATGAAGGATTTTCTTATCTGAACTGTTCATCAATGGATTTTCCATAAGTTCGTCAATCAACAATCGGTTTCTTAAACATTAGGAGTTAGGATTTAGGAGTTACTTTACCAGGGATACTTGTAAAACCTAGAACGATCCGTTGATCCATTTCAATGATAACTAACTACTTGAATTATGTTGAAATGAAAGAAGACGAAGGATTCTTTAACTAAACTCTTGATCAATCGAATTTTGATTTCGATTAGTAGTTTGGATTTAGGATTGATATTTGTAAAACCGAGAACGATCCATCGATCTAGTCCAATGAGAACTCCTTGAATGTTGAATTATACTGAAGCGGAAGGAAGACGAAGGATTTTTTAATCTGAACTGTTTATCAACCGATTTTCCATTTTGATTAATTTCCAAATATTAGGAGTTAGGCCAAAGTAGCTCAACTGATGTGTTAGAGGTAGGTGTTTTAAATTCTCTATCTTGATTGTAGTAAAAAAACATTAAGAGTTAGGTTAGTTTTGAAAAATAATTGATTGTAAGAATAAGTGGTTTACTTCTAACTTATTACTGGGTTTTGAGAAAATATTAAAAGAATAATTGTCTGACATCCAAGCACTATAAAAGAATCTACTAATTTCAAGTTGTCTGAGTTAGAAACACTTTAAACTTGAGAACTCCAACTCTTATTAAAGTTCTTTTTGTATTCTCTAGTTTGAGAGTGGAAAAACTCATAGATTTCGATAGAAAGTTTTCTATGTAAATTCTTATATTTAACTCAATTATGTTCCGCTTACTCCTGCAGTAATGATGGGAGTTTTTTTTCCATAGCATTGATACTTGTTAAACCTAGGGCGATTCTTTGATCCATTTCGATTACTAGGCAAATATCTATTTGTTATGCAGAGAAATTGTAAAATCTCGATCCATTTGAAAAGCTACGAAAGGAACTGTTTCCCAAAATTGATACCAAGCATTAACCAAAGACGAATTCACACGAACCAATCCACGACTTTAAATGCAACATTGAGACGTCAGAAGGGATTCGGACCAGCTCCAAGGAGGAAGAAGATGAAGAAAACAAAAAGAGAAGGAAGTGAAGACGAGCATGGGGATGAAGATGAAGACGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACGAACAGGATGATAAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGTGCTGAAAATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGCTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTATTGGGTTGGAACGAAGCTCAGAAGAATTGGCCTGTCTTTTGGCAGTCCCTTTGGGGTGGATCTAATAAGAAATAGATGAATTTGCTTTCTTTTTTATAAATATTATGGTTTTCAAGTTATATGAGTTATATGAGAAGCCAAAGCGAGTATAACTAATCTCACATATTCATACGGTAAGAGATTTGTAGTTTGAATCTTCTCATCCTTGTACTAAAAATAGTTTATGAGAAGTAAGGTTGCTTGTAAACAGATGAAGAGATAGGTGTTTTAGATTTTTTTTACGGATATTATTGCCTCGATTAAATTATAAGTTTAATTTTTGATATTTAATTATTTTGGTTAAAA CCCGAAATGCTTTAGGAATCCAAACAAGCTTCCGCCAATTCGACGCAAAATTTTGATTGCTAACCAAAAGAAAACCTTATCCTCTTTCCCTGCTCTCATCCATGGCGTCCGTCCCTGCTTCGCGCAGTGAGGGCAAAATGTAAGAGACGAGCCGACTGTGTTTCAGTTTCAGTGACAAACCCTAATGGCCGCCATTTCCGGATCTCTCAACCTTCCTCTTGCGCCGTCAAACCTTTCATCACCCCGCATTAAGAGAAATTGTAAAATCTCGATCCATTTGAAAAGCTACGAAAGGAACTGTTTCCCAAAATTGATACCAAGCATTAACCAAAGACGAATTCACACGAACCAATCCACGACTTTAAATGCAACATTGAGACGTCAGAAGGGATTCGGACCAGCTCCAAGGAGGAAGAAGATGAAGAAAACAAAAAGAGAAGGAAGTGAAGACGAGCATGGGGATGAAGATGAAGACGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACGAACAGGATGATAAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGTGCTGAAAATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGCTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTATTGGGTTGGAACGAAGCTCAGAAGAATTGGCCTGTCTTTTGGCAGTCCCTTTGGGGTGGATCTAATAAGAAATAGATGAATTTGCTTTCTTTTTTATAAATATTATGGTTTTCAAGTTATATGAGTTATATGAGAAGCCAAAGCGAGTATAACTAATCTCACATATTCATACGGTAAGAGATTTGTAGTTTGAATCTTCTCATCCTTGTACTAAAAATAGTTTATGAGAAGTAAGGTTGCTTGTAAACAGATGAAGAGATAGGTGTTTTAGATTTTTTTTACGGATATTATTGCCTCGATTAAATTATAAGTTTAATTTTTGATATTTAATTATTTTGGTTAAAA ATGGCCGCCATTTCCGGATCTCTCAACCTTCCTCTTGCGCCGTCAAACCTTTCATCACCCCGCATTAAGAGAAATTGTAAAATCTCGATCCATTTGAAAAGCTACGAAAGGAACTGTTTCCCAAAATTGATACCAAGCATTAACCAAAGACGAATTCACACGAACCAATCCACGACTTTAAATGCAACATTGAGACGTCAGAAGGGATTCGGACCAGCTCCAAGGAGGAAGAAGATGAAGAAAACAAAAAGAGAAGGAAGTGAAGACGAGCATGGGGATGAAGATGAAGACGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACGAACAGGATGATAAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGTGCTGAAAATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGCTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTATTGGGTTGGAACGAAGCTCAGAAGAATTGGCCTGTCTTTTGGCAGTCCCTTTGGGGTGGATCTAATAAGAAATAG MAAISGSLNLPLAPSNLSSPRIKRNCKISIHLKSYERNCFPKLIPSINQRRIHTNQSTTLNATLRRQKGFGPAPRRKKMKKTKREGSEDEHGDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK
BLAST of BhiUN403M8 vs. TAIR10
Match: AT4G19100.1 (Protein of unknown function (DUF3464)) HSP 1 Score: 189.5 bits (480), Expect = 2.1e-48 Identity = 130/183 (71.04%), Postives = 148/183 (80.87%), Query Frame = 0
BLAST of BhiUN403M8 vs. TAIR10
Match: AT5G52780.1 (Protein of unknown function (DUF3464)) HSP 1 Score: 71.6 bits (174), Expect = 6.3e-13 Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0
BLAST of BhiUN403M8 vs. Swiss-Prot
Match: sp|O49668|PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 3.7e-47 Identity = 130/183 (71.04%), Postives = 148/183 (80.87%), Query Frame = 0
BLAST of BhiUN403M8 vs. Swiss-Prot
Match: sp|Q9LTD9|Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11 Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0
BLAST of BhiUN403M8 vs. TrEMBL
Match: tr|A0A1S3BKY8|A0A1S3BKY8_CUCME (protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 1.1e-75 Identity = 182/216 (84.26%), Postives = 192/216 (88.89%), Query Frame = 0
BLAST of BhiUN403M8 vs. TrEMBL
Match: tr|A0A1S3BKQ0|A0A1S3BKQ0_CUCME (protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 2.7e-74 Identity = 182/217 (83.87%), Postives = 192/217 (88.48%), Query Frame = 0
BLAST of BhiUN403M8 vs. TrEMBL
Match: tr|A0A0A0L507|A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 5.2e-70 Identity = 174/213 (81.69%), Postives = 187/213 (87.79%), Query Frame = 0
BLAST of BhiUN403M8 vs. TrEMBL
Match: tr|A0A2I4H7Q4|A0A2I4H7Q4_9ROSI (protein PAM68, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109014250 PE=4 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 7.8e-50 Identity = 137/171 (80.12%), Postives = 151/171 (88.30%), Query Frame = 0
BLAST of BhiUN403M8 vs. TrEMBL
Match: tr|A0A2G9I4T1|A0A2G9I4T1_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02504 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49 Identity = 129/172 (75.00%), Postives = 146/172 (84.88%), Query Frame = 0
BLAST of BhiUN403M8 vs. NCBI nr
Match: XP_008448605.1 (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75 Identity = 182/216 (84.26%), Postives = 192/216 (88.89%), Query Frame = 0
BLAST of BhiUN403M8 vs. NCBI nr
Match: XP_008448604.1 (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 287.3 bits (734), Expect = 4.0e-74 Identity = 182/217 (83.87%), Postives = 192/217 (88.48%), Query Frame = 0
BLAST of BhiUN403M8 vs. NCBI nr
Match: XP_004146119.1 (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus] >KGN55697.1 hypothetical protein Csa_3G006590 [Cucumis sativus]) HSP 1 Score: 273.1 bits (697), Expect = 7.9e-70 Identity = 174/213 (81.69%), Postives = 187/213 (87.79%), Query Frame = 0
BLAST of BhiUN403M8 vs. NCBI nr
Match: XP_011650314.1 (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68 Identity = 174/214 (81.31%), Postives = 187/214 (87.38%), Query Frame = 0
BLAST of BhiUN403M8 vs. NCBI nr
Match: XP_023540526.1 (protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 263.5 bits (672), Expect = 6.2e-67 Identity = 174/213 (81.69%), Postives = 183/213 (85.92%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
|