BhiUN179M36 (mRNA) Wax gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAAATTGAAATAAGAAGAAGAAAAAAAAAGCATATTAAAAAAAATGAAAAGTTAATTAATTTAATTCTTAATTTATTTAAAATACAAAAAATGGGGGAAATAAACCGTAAGCGAATTAGGGTTTTGGAAAGGGTAGATCTCATTCTCTCTTTCAGCTTCTATATATTGCGAAGCCCTTTCAATATTTTGCTCTCATCGCCATTTTTTTGCACAGAAATTTCTTCCCAACTTTGAAGATGGCGGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTTAACGATTCGAAAGGTTTCGGCTTCATCAAACCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCTTCCATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGCAAATCGAAAGCCATTGAGGTTGTTGCGCTCGATGGATCTTCGGGAAATCGAAGGGATAACTTTGGTGGTGGTGGTGGAAGGGGTGGTCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGGGGAGGTGATAGGCGGAATGGGAACAGTGGAGCCGGTGGGGGTGCGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCGAGAGACTGTACTCGTGCTAGTAACCGCAGCGGCGGTGGTGGAGGCGGCGGTGGGTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCGCGAGGAAACAGTGGCGGAGGTGGAGGTGGAGGCGGCGGTGGTGCCGGGGCTTGCTATAATTGTGGTGGTTTTGGGCATTTGGCTAGAGATTGCAATAGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATATGGGCATATAGCTAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGCAGCGGCGGTGGCGGTGGGCCAAACACTTGCTTCAATTGTGGGAAATCGGGTCATTTTGCTAGGGAGTGTCCTGATGCACCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTACTTGAGAGGTTTTTATTAATTTTGATATTTCATGGTTGTTTCGCTCTTTAGGGGCAAATTTTTCAGGTTCACACATGGTGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTTTTCCTTTTTTTTTTTAATTACCTTTTATATCTCGAATTCAGGTTGTGCGATGTCTGATTCAATTGTAATTATCCATGTTAACATCTAATAGCCCATGAGATGAAGTAGCTAAGTTCAGTTTGGTGATATACGTTGTAGGCATGTTCTTTGTTTTAGCAATACCGTACTAGGCCTTCATTTTGTTTACTTCTTCATCATCAAGAATGGATTTCTTTTATTATGATCCTCAAGTGTTACAAGGCATGTCCGGGTGCACTCTGCTCTGTCTTGCTTTGTTCTGTGCTTTATAAATTCTGGTGTGGAAGTATTTTAGAAGTTGTGGTATGTGGTTGGTGGTTGGTGGTTTTATGCTTTTAATCCCATTTCAAGTTTCATAGATTTGACTCCTAGACCCTAGTATAAATTTATAAATTGTCCAAAAGATTTACCAATAAAAACATAGGTATATACAGGGCTTTAACAAGACGAAGCAGAAAGCATTGAAAGTGAATGTAAATAATTGAATTAAAAGAAGGCTAATGCGTCCACGCTTTTAGTCTAG ATTAAATTGAAATAAGAAGAAGAAAAAAAAAGCATATTAAAAAAAATGAAAAGTTAATTAATTTAATTCTTAATTTATTTAAAATACAAAAAATGGGGGAAATAAACCGTAAGCGAATTAGGGTTTTGGAAAGGGTAGATCTCATTCTCTCTTTCAGCTTCTATATATTGCGAAGCCCTTTCAATATTTTGCTCTCATCGCCATTTTTTTGCACAGAAATTTCTTCCCAACTTTGAAGATGGCGGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTTAACGATTCGAAAGGTTTCGGCTTCATCAAACCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCTTCCATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGCAAATCGAAAGCCATTGAGGTTGTTGCGCTCGATGGATCTTCGGGAAATCGAAGGGATAACTTTGGTGGTGGTGGTGGAAGGGGTGGTCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGGGGAGGTGATAGGCGGAATGGGAACAGTGGAGCCGGTGGGGGTGCGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCGAGAGACTGTACTCGTGCTAGTAACCGCAGCGGCGGTGGTGGAGGCGGCGGTGGGTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCGCGAGGAAACAGTGGCGGAGGTGGAGGTGGAGGCGGCGGTGGTGCCGGGGCTTGCTATAATTGTGGTGGTTTTGGGCATTTGGCTAGAGATTGCAATAGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATATGGGCATATAGCTAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGCAGCGGCGGTGGCGGTGGGCCAAACACTTGCTTCAATTGTGGGAAATCGGGTCATTTTGCTAGGGAGTGTCCTGATGCACCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTACTTGAGAGGTTTTTATTAATTTTGATATTTCATGGTTGTTTCGCTCTTTAGGGGCAAATTTTTCAGGTTCACACATGGTGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTTTTCCTTTTTTTTTTTAATTACCTTTTATATCTCGAATTCAGGTTGTGCGATGTCTGATTCAATTGTAATTATCCATGTTAACATCTAATAGCCCATGAGATGAAGTAGCTAAGTTCAGTTTGGTGATATACGTTGTAGGCATGTTCTTTGTTTTAGCAATACCGTACTAGGCCTTCATTTTGTTTACTTCTTCATCATCAAGAATGGATTTCTTTTATTATGATCCTCAAGTGTTACAAGGCATGTCCGGGTGCACTCTGCTCTGTCTTGCTTTGTTCTGTGCTTTATAAATTCTGGTGTGGAAGTATTTTAGAAGTTGTGGTATGTGGTTGGTGGTTGGTGGTTTTATGCTTTTAATCCCATTTCAAGTTTCATAGATTTGACTCCTAGACCCTAGTATAAATTTATAAATTGTCCAAAAGATTTACCAATAAAAACATAGGTATATACAGGGCTTTAACAAGACGAAGCAGAAAGCATTGAAAGTGAATGTAAATAATTGAATTAAAAGAAGGCTAATGCGTCCACGCTTTTAGTCTAG ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTTAACGATTCGAAAGGTTTCGGCTTCATCAAACCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCTTCCATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGCAAATCGAAAGCCATTGAGGTTGTTGCGCTCGATGGATCTTCGGGAAATCGAAGGGATAACTTTGGTGGTGGTGGTGGAAGGGGTGGTCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGGGGAGGTGATAGGCGGAATGGGAACAGTGGAGCCGGTGGGGGTGCGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCGAGAGACTGTACTCGTGCTAGTAACCGCAGCGGCGGTGGTGGAGGCGGCGGTGGGTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCGCGAGGAAACAGTGGCGGAGGTGGAGGTGGAGGCGGCGGTGGTGCCGGGGCTTGCTATAATTGTGGTGGTTTTGGGCATTTGGCTAGAGATTGCAATAGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATATGGGCATATAGCTAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGCAGCGGCGGTGGCGGTGGGCCAAACACTTGCTTCAATTGTGGGAAATCGGGTCATTTTGCTAGGGAGTGTCCTGATGCACCTTGA MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGGACYQCGEQGHLARDCTRASNRSGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGSGGGGGPNTCFNCGKSGHFARECPDAP
BLAST of BhiUN179M36 vs. TAIR10
Match: AT2G17870.1 (cold shock domain protein 3) HSP 1 Score: 100.5 bits (249), Expect = 1.6e-21 Identity = 55/135 (40.74%), Postives = 69/135 (51.11%), Query Frame = 0
BLAST of BhiUN179M36 vs. TAIR10
Match: AT4G36020.1 (cold shock domain protein 1) HSP 1 Score: 92.8 bits (229), Expect = 3.4e-19 Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 0
BLAST of BhiUN179M36 vs. TAIR10
Match: AT4G38680.1 (glycine rich protein 2) HSP 1 Score: 86.3 bits (212), Expect = 3.2e-17 Identity = 90/137 (65.69%), Postives = 106/137 (77.37%), Query Frame = 0
BLAST of BhiUN179M36 vs. TAIR10
Match: AT2G21060.1 (glycine-rich protein 2B) HSP 1 Score: 83.2 bits (204), Expect = 2.7e-16 Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0
BLAST of BhiUN179M36 vs. Swiss-Prot
Match: sp|Q94C69|CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 3.0e-20 Identity = 55/135 (40.74%), Postives = 69/135 (51.11%), Query Frame = 0
BLAST of BhiUN179M36 vs. Swiss-Prot
Match: sp|P27484|GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 5.6e-19 Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 0
BLAST of BhiUN179M36 vs. Swiss-Prot
Match: sp|O65639|CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 6.2e-18 Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 0
BLAST of BhiUN179M36 vs. Swiss-Prot
Match: sp|Q41188|CSP2_ARATH (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 5.8e-16 Identity = 90/137 (65.69%), Postives = 106/137 (77.37%), Query Frame = 0
BLAST of BhiUN179M36 vs. Swiss-Prot
Match: sp|Q38896|CSP4_ARATH (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 4.9e-15 Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0
BLAST of BhiUN179M36 vs. TrEMBL
Match: tr|A0A0A0L4X7|A0A0A0L4X7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 9.5e-40 Identity = 135/141 (95.74%), Postives = 135/141 (95.74%), Query Frame = 0
BLAST of BhiUN179M36 vs. TrEMBL
Match: tr|A0A1S3BKK1|A0A1S3BKK1_CUCME (cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 4.4e-37 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
BLAST of BhiUN179M36 vs. TrEMBL
Match: tr|E5RDD6|E5RDD6_CUCME (Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 4.4e-37 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
BLAST of BhiUN179M36 vs. TrEMBL
Match: tr|K7K6H1|K7K6H1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100806783 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 9.2e-27 Identity = 94/140 (67.14%), Postives = 105/140 (75.00%), Query Frame = 0
BLAST of BhiUN179M36 vs. TrEMBL
Match: tr|A0A1S3UN22|A0A1S3UN22_VIGRR (cold shock protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767041 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 9.2e-27 Identity = 75/145 (51.72%), Postives = 87/145 (60.00%), Query Frame = 0
BLAST of BhiUN179M36 vs. NCBI nr
Match: XP_004146143.1 (PREDICTED: cold shock domain-containing protein 3-like [Cucumis sativus] >KGN55657.1 hypothetical protein Csa_3G002765 [Cucumis sativus]) HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39 Identity = 135/141 (95.74%), Postives = 135/141 (95.74%), Query Frame = 0
BLAST of BhiUN179M36 vs. NCBI nr
Match: XP_022965328.1 (cold shock domain-containing protein 3-like [Cucurbita maxima]) HSP 1 Score: 170.6 bits (431), Expect = 7.1e-39 Identity = 134/140 (95.71%), Postives = 134/140 (95.71%), Query Frame = 0
BLAST of BhiUN179M36 vs. NCBI nr
Match: XP_023551806.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 170.6 bits (431), Expect = 7.1e-39 Identity = 134/140 (95.71%), Postives = 134/140 (95.71%), Query Frame = 0
BLAST of BhiUN179M36 vs. NCBI nr
Match: XP_022923189.1 (cold shock domain-containing protein 3-like [Cucurbita moschata]) HSP 1 Score: 168.3 bits (425), Expect = 3.5e-38 Identity = 133/139 (95.68%), Postives = 133/139 (95.68%), Query Frame = 0
BLAST of BhiUN179M36 vs. NCBI nr
Match: XP_022948847.1 (cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protein 1-like [Cucurbita moschata]) HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37 Identity = 129/140 (92.14%), Postives = 129/140 (92.14%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
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