Bhi08M000268 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08M000268
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	RNA-directed DNA polymerase
Location	chr8 : 11144050 .. 11144261 (+)
Sequence length	212

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

mRNA sequence

ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

Coding sequence (CDS)

ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

Protein sequence

IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRRIHGTSPLTSSHVRTRREEDKF

Homology

[Close]

BLAST of Bhi08M000268 vs. TrEMBL
Match: tr|A0A2I0WXY3|A0A2I0WXY3_9ASPA (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca027009 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 22/49 (44.90%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           +AR++ GLK+ IQE+++L  V +LP A+++A+KVE++  ++ +SNT RR
Sbjct: 263 VARYIGGLKDSIQEKLELNAVWSLPQAVNLAFKVEMQQSRQSKSNTIRR 311

[Close]

BLAST of Bhi08M000268 vs. NCBI nr
Match: XP_020705563.1 (uncharacterized protein LOC110116361, partial [Dendrobium catenatum])

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-04
Identity = 22/49 (44.90%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           +AR++ GLK+ IQE+++L  V +LP A+++A+KVE++  ++ +SNT RR
Sbjct: 263 VARYIGGLKDSIQEKLELNAVWSLPQAVNLAFKVEMQQSRQSKSNTIRR 311

[Close]

BLAST of Bhi08M000268 vs. NCBI nr
Match: PKU80524.1 (RNA-directed DNA polymerase [Dendrobium catenatum])

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-04
Identity = 22/49 (44.90%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           +AR++ GLK+ IQE+++L  V +LP A+++A+KVE++  ++ +SNT RR
Sbjct: 263 VARYIGGLKDSIQEKLELNAVWSLPQAVNLAFKVEMQQSRQSKSNTIRR 311

[Close]

BLAST of Bhi08M000268 vs. NCBI nr
Match: XP_022138328.1 (uncharacterized protein LOC111009540 isoform X2 [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-04
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRRIHGTSPLTSSH 60
           IARFVDGL+E+IQ+QMD+QP+  L  AI MA K+E   +KK+    +RR     P  S  
Sbjct: 276 IARFVDGLREDIQDQMDIQPIHLLTDAIVMATKIE---DKKRLRTPARRTPWDKPSISKT 335

Query: 61  VRT 64
             T
Sbjct: 336 ATT 335

[Close]

BLAST of Bhi08M000268 vs. NCBI nr
Match: XP_022138327.1 (uncharacterized protein LOC111009540 isoform X1 [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-04
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRRIHGTSPLTSSH 60
           IARFVDGL+E+IQ+QMD+QP+  L  AI MA K+E   +KK+    +RR     P  S  
Sbjct: 276 IARFVDGLREDIQDQMDIQPIHLLTDAIVMATKIE---DKKRLRTPARRTPWDKPSISKT 335

Query: 61  VRT 64
             T
Sbjct: 336 ATT 335

The following BLAST results are available for this feature:

BLAST of Bhi08M000268 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08M000268 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08M000268 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I0WXY3\|A0A2I0WXY3_9ASPA	2.9e-04	44.90	RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca027009 ...	[more]

BLAST of Bhi08M000268 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020705563.1	4.3e-04	44.90	uncharacterized protein LOC110116361, partial [Dendrobium catenatum]	[more]
PKU80524.1	4.3e-04	44.90	RNA-directed DNA polymerase [Dendrobium catenatum]	[more]
XP_022138328.1	9.6e-04	47.62	uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]	[more]
XP_022138327.1	9.6e-04	47.62	uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000268	Bhi08G000268	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000268.exon1	Bhi08M000268.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000268	cds.Bhi08M000268	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000268	Bhi08M000268-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..70