Bhi08G000268 (gene) Wax gourd

Overview
NameBhi08G000268
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRNA-directed DNA polymerase
Locationchr8 : 11144050 .. 11144261 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

mRNA sequence

ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

Coding sequence (CDS)

ATTGCTAGATTTGTAGATGGTCTTAAGGAAGAAATACAAGAACAAATGGATCTACAACCGGTAGGCACTCTACCAGCAGCAATTTCTATGGCTTATAAAGTCGAAATCAAATTGGAAAAGAAACAAAGAAGCAATACTTCAAGAAGAATACATGGGACAAGCCCTTTAACTAGTAGCCATGTAAGAACACGGAGGGAGGAAGACAAGTTCAA

Protein sequence

IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRRIHGTSPLTSSHVRTRREEDKF
Homology
[Close]
BLAST of Bhi08G000268 vs. TrEMBL
Match: tr|A0A2I0WXY3|A0A2I0WXY3_9ASPA (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca027009 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 22/49 (44.90%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           +AR++ GLK+ IQE+++L  V +LP A+++A+KVE++  ++ +SNT RR
Sbjct: 263 VARYIGGLKDSIQEKLELNAVWSLPQAVNLAFKVEMQQSRQSKSNTIRR 311

[Close]
BLAST of Bhi08G000268 vs. NCBI nr
Match: XP_020705563.1 (uncharacterized protein LOC110116361, partial [Dendrobium catenatum])

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-04
Identity = 22/49 (44.90%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           +AR++ GLK+ IQE+++L  V +LP A+++A+KVE++  ++ +SNT RR
Sbjct: 263 VARYIGGLKDSIQEKLELNAVWSLPQAVNLAFKVEMQQSRQSKSNTIRR 311

[Close]
BLAST of Bhi08G000268 vs. NCBI nr
Match: PKU80524.1 (RNA-directed DNA polymerase [Dendrobium catenatum])

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-04
Identity = 22/49 (44.90%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRR 50
           +AR++ GLK+ IQE+++L  V +LP A+++A+KVE++  ++ +SNT RR
Sbjct: 263 VARYIGGLKDSIQEKLELNAVWSLPQAVNLAFKVEMQQSRQSKSNTIRR 311

[Close]
BLAST of Bhi08G000268 vs. NCBI nr
Match: XP_022138328.1 (uncharacterized protein LOC111009540 isoform X2 [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-04
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRRIHGTSPLTSSH 60
           IARFVDGL+E+IQ+QMD+QP+  L  AI MA K+E   +KK+    +RR     P  S  
Sbjct: 276 IARFVDGLREDIQDQMDIQPIHLLTDAIVMATKIE---DKKRLRTPARRTPWDKPSISKT 335

Query: 61  VRT 64
             T
Sbjct: 336 ATT 335

[Close]
BLAST of Bhi08G000268 vs. NCBI nr
Match: XP_022138327.1 (uncharacterized protein LOC111009540 isoform X1 [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-04
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 1   IARFVDGLKEEIQEQMDLQPVGTLPAAISMAYKVEIKLEKKQRSNTSRRIHGTSPLTSSH 60
           IARFVDGL+E+IQ+QMD+QP+  L  AI MA K+E   +KK+    +RR     P  S  
Sbjct: 276 IARFVDGLREDIQDQMDIQPIHLLTDAIVMATKIE---DKKRLRTPARRTPWDKPSISKT 335

Query: 61  VRT 64
             T
Sbjct: 336 ATT 335

The following BLAST results are available for this feature:
BLAST of Bhi08G000268 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi08G000268 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi08G000268 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I0WXY3|A0A2I0WXY3_9ASPA2.9e-0444.90RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca027009 ... [more]
BLAST of Bhi08G000268 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_020705563.14.3e-0444.90uncharacterized protein LOC110116361, partial [Dendrobium catenatum][more]
PKU80524.14.3e-0444.90RNA-directed DNA polymerase [Dendrobium catenatum][more]
XP_022138328.19.6e-0447.62uncharacterized protein LOC111009540 isoform X2 [Momordica charantia][more]
XP_022138327.19.6e-0447.62uncharacterized protein LOC111009540 isoform X1 [Momordica charantia][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000268Bhi08M000268mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..70