Cla97C03G065430 (gene) Watermelon (97103) v2
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCTTGGTCTACTGGTTAGTCATTTGATCCTGTTGATGGCATATCCTGGGCCTCTTGTTTCCAATTTTACGTTTAATGGTTGATTGGCAGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTGAGTTTTATTTGTTTTTTGTTTCCTCCCATAAACATGTGCATGCTAAGTGTTTCGTGATCTACTTTTTTATCAACTTGAATGATCTCTTGAGATGAAATATTTTATATTAGAAGCATGGACCCTCTGCCTCAGATTTTTAAATTCTGCACTTGATGAAAATGCTTAACTACTTATGTCACAGGAAGTTCTTATCTATTTTAGGGCTATTCTTAGATGAAATCTTTTGGGATTTTGCGTTCCTTCTCACACCAGTTTTAAAATACGGGCAGGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA ATGGATCTTGGTCTACTGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA ATGGATCTTGGTCTACTGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_022147557.1 (DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia]) HSP 1 Score: 239.2 bits (609), Expect = 8.1e-60 Identity = 120/134 (89.55%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_004144123.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >KGN66283.1 hypothetical protein Csa_1G595870 [Cucumis sativus]) HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59 Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_022968121.1 (uncharacterized protein LOC111467450 [Cucurbita maxima]) HSP 1 Score: 237.3 bits (604), Expect = 3.1e-59 Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_022961283.1 (uncharacterized protein LOC111461827 [Cucurbita moschata]) HSP 1 Score: 235.0 bits (598), Expect = 1.5e-58 Identity = 120/134 (89.55%), Postives = 125/134 (93.28%), Query Frame = 0
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_022988288.1 (uncharacterized protein LOC111485583 [Cucurbita maxima]) HSP 1 Score: 235.0 bits (598), Expect = 1.5e-58 Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 0
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A0A0LWX7|A0A0A0LWX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595870 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59 Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A1S3BPR1|A0A1S3BPR1_CUCME (DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo OX=3656 GN=LOC103492360 PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58 Identity = 116/134 (86.57%), Postives = 125/134 (93.28%), Query Frame = 0
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A1Q3BY25|A0A1Q3BY25_CEPFO (RNA_pol_Rpc4 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_16270 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 8.9e-39 Identity = 79/132 (59.85%), Postives = 103/132 (78.03%), Query Frame = 0
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A2P5E7T5|A0A2P5E7T5_9ROSA (DNA-directed RNA polymerase III subunit RPC OS=Trema orientalis OX=63057 GN=TorRG33x02_225750 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 4.4e-38 Identity = 79/134 (58.96%), Postives = 104/134 (77.61%), Query Frame = 0
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A2R6R430|A0A2R6R430_ACTCH (DNA-directed RNA polymerase III subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09818 PE=4 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 5.8e-38 Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 0
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|Q5E9Z7|RPC4_BOVIN (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09 Identity = 38/131 (29.01%), Postives = 69/131 (52.67%), Query Frame = 0
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|P05423|RPC4_HUMAN (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09 Identity = 34/131 (25.95%), Postives = 67/131 (51.15%), Query Frame = 0
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|Q91WD1|RPC4_MOUSE (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2) HSP 1 Score: 61.6 bits (148), Expect = 7.6e-09 Identity = 34/131 (25.95%), Postives = 66/131 (50.38%), Query Frame = 0
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|O74857|RPC4_SCHPO (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc53 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 7.1e-07 Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|Q8T1V7|RPC4_DICDI (DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=44689 GN=polr3d PE=3 SV=2) HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05 Identity = 25/78 (32.05%), Postives = 41/78 (52.56%), Query Frame = 0
BLAST of Cla97C03G065430 vs. TAIR10
Match: AT5G09380.1 (RNA polymerase III RPC4) HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28 Identity = 61/133 (45.86%), Postives = 92/133 (69.17%), Query Frame = 0
BLAST of Cla97C03G065430 vs. TAIR10
Match: AT4G25180.1 (RNA polymerase III RPC4) HSP 1 Score: 89.0 bits (219), Expect = 2.5e-18 Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |