Cla97C03G065430.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G065430.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DNA-directed RNA polymerase III subunit RPC4
Location	Cla97Chr03 : 28892868 .. 28893620 (+)
Sequence length	405

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTGGTCTACTGGTTAGTCATTTGATCCTGTTGATGGCATATCCTGGGCCTCTTGTTTCCAATTTTACGTTTAATGGTTGATTGGCAGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTGAGTTTTATTTGTTTTTTGTTTCCTCCCATAAACATGTGCATGCTAAGTGTTTCGTGATCTACTTTTTTATCAACTTGAATGATCTCTTGAGATGAAATATTTTATATTAGAAGCATGGACCCTCTGCCTCAGATTTTTAAATTCTGCACTTGATGAAAATGCTTAACTACTTATGTCACAGGAAGTTCTTATCTATTTTAGGGCTATTCTTAGATGAAATCTTTTGGGATTTTGCGTTCCTTCTCACACCAGTTTTAAAATACGGGCAGGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA

mRNA sequence

ATGGATCTTGGTCTACTGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA

Coding sequence (CDS)

ATGGATCTTGGTCTACTGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA

Protein sequence

MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL

Homology

[Close]

BLAST of Cla97C03G065430.1 vs. NCBI nr
Match: XP_022147557.1 (DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia])

HSP 1 Score: 239.2 bits (609), Expect = 8.1e-60
Identity = 120/134 (89.55%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           MDLGLLEENPET++FFLQ+PPMVPVTKQSSTVEGM AA+SSEQSKGS  RQ  CS+NELP
Sbjct: 160 MDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDI+YDVSSGMDCGFAQDVAAINVEGK CCIVGELSKRAIL
Sbjct: 220 SGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSMLK+IEDL
Sbjct: 280 TPDVDSMLKDIEDL 293

[Close]

BLAST of Cla97C03G065430.1 vs. NCBI nr
Match: XP_004144123.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >KGN66283.1 hypothetical protein Csa_1G595870 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           M+LGLLEENPE D+ FLQLPPMVP+ KQSS+VE MG+ NSSEQ+K S+PRQKTCSMNELP
Sbjct: 160 MNLGLLEENPEADVLFLQLPPMVPMIKQSSSVEDMGSGNSSEQNKASQPRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG +GKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQ+VAAINVEGKRCCIVGELSKRAIL
Sbjct: 220 SGSIGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSMLKNIEDL
Sbjct: 280 TPDVDSMLKNIEDL 293

[Close]

BLAST of Cla97C03G065430.1 vs. NCBI nr
Match: XP_022968121.1 (uncharacterized protein LOC111467450 [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 3.1e-59
Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           MDLGLLE+NPET+IFFLQLPPMVPVT+QSST EGM AANS EQ+K S+P QKTCS+NE P
Sbjct: 157 MDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNKDSQPPQKTCSLNEFP 216

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDI+YDVSSGMDCGFAQ++AAINVEGKRCCIVGELSKRA+L
Sbjct: 217 SGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVL 276

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSMLKNIEDL
Sbjct: 277 TPDVDSMLKNIEDL 290

[Close]

BLAST of Cla97C03G065430.1 vs. NCBI nr
Match: XP_022961283.1 (uncharacterized protein LOC111461827 [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 1.5e-58
Identity = 120/134 (89.55%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           +DLGLLEENPETDIFFLQLPPMVPV KQSSTVEG+GAANSSE    S+PRQKTCSMNELP
Sbjct: 160 VDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSE----SQPRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQDVAAINVEGK CC +GELSKRAIL
Sbjct: 220 SGSMGKLLVYRSGAVKLKLGDIIYDVSSGMQCGFAQDVAAINVEGKYCCFIGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDV+SMLKNIEDL
Sbjct: 280 TPDVESMLKNIEDL 289

[Close]

BLAST of Cla97C03G065430.1 vs. NCBI nr
Match: XP_022988288.1 (uncharacterized protein LOC111485583 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 1.5e-58
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           +DLGLLEENPETDIFFLQLPPMVPV KQSSTVEG+GAANSSE    S+PRQKTCSMNELP
Sbjct: 160 VDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSE----SQPRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQDVAAINVEGK CCI+GELSKRAIL
Sbjct: 220 SGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDV+SMLKN+EDL
Sbjct: 280 TPDVESMLKNMEDL 289

[Close]

BLAST of Cla97C03G065430.1 vs. TrEMBL
Match: tr|A0A0A0LWX7|A0A0A0LWX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595870 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           M+LGLLEENPE D+ FLQLPPMVP+ KQSS+VE MG+ NSSEQ+K S+PRQKTCSMNELP
Sbjct: 160 MNLGLLEENPEADVLFLQLPPMVPMIKQSSSVEDMGSGNSSEQNKASQPRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG +GKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQ+VAAINVEGKRCCIVGELSKRAIL
Sbjct: 220 SGSIGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSMLKNIEDL
Sbjct: 280 TPDVDSMLKNIEDL 293

[Close]

BLAST of Cla97C03G065430.1 vs. TrEMBL
Match: tr|A0A1S3BPR1|A0A1S3BPR1_CUCME (DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo OX=3656 GN=LOC103492360 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 116/134 (86.57%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           M+LGLLEENPETD+FFLQLPPMVP+ KQSSTVE MG+ N SEQ+  S+ RQKTCSMNELP
Sbjct: 160 MNLGLLEENPETDVFFLQLPPMVPMIKQSSTVENMGSGNVSEQNSASQTRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAIL
Sbjct: 220 SGSMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINMEGKHCCIVGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSML+NIEDL
Sbjct: 280 TPDVDSMLRNIEDL 293

[Close]

BLAST of Cla97C03G065430.1 vs. TrEMBL
Match: tr|A0A1Q3BY25|A0A1Q3BY25_CEPFO (RNA_pol_Rpc4 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_16270 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.9e-39
Identity = 79/132 (59.85%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 3   LGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPSG 62
           LGL+EEN E  + FLQLPP +P+TK+S+T +G    NSS   +    + KTC+++ELP+G
Sbjct: 166 LGLMEENQEQSMIFLQLPPAMPITKRSATEDGHEQTNSSRPRRDGRAKGKTCALDELPAG 225

Query: 63  FMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTP 122
           FMGK+LVY+SGAVKLKLG+I+YDV  G+DC FAQDV A+N   K CC+VGEL KRAILTP
Sbjct: 226 FMGKMLVYKSGAVKLKLGNILYDVGPGLDCVFAQDVVAVNTTEKHCCLVGELKKRAILTP 285

Query: 123 DVDSMLKNIEDL 135
           D+DS+L ++ DL
Sbjct: 286 DLDSILSSMADL 297

[Close]

BLAST of Cla97C03G065430.1 vs. TrEMBL
Match: tr|A0A2P5E7T5|A0A2P5E7T5_9ROSA (DNA-directed RNA polymerase III subunit RPC OS=Trema orientalis OX=63057 GN=TorRG33x02_225750 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.4e-38
Identity = 79/134 (58.96%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           ++LGL+EENPE  + FLQLPP +P+ K+S+T +G  A  SS     +   QK+C++NELP
Sbjct: 166 VELGLMEENPEPSMLFLQLPPTMPLIKRSATNDGQKATESSLAPVAANTLQKSCALNELP 225

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           +GFMGK+LVY+SGA+KL+ GD +YDVSSGMDC FAQDV AIN   K CCIV E++KR I+
Sbjct: 226 AGFMGKMLVYKSGAIKLRTGDTLYDVSSGMDCVFAQDVVAINNAEKHCCIVAEINKRVII 285

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDS+L ++ DL
Sbjct: 286 TPDVDSILDSMADL 299

[Close]

BLAST of Cla97C03G065430.1 vs. TrEMBL
Match: tr|A0A2R6R430|A0A2R6R430_ACTCH (DNA-directed RNA polymerase III subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09818 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.8e-38
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 0


Query: 2   DLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPS 61
           +LGL+EENPE  +FFLQLP  +P+ KQS   EG   A S      ++P  K+CS++ELP+
Sbjct: 162 ELGLMEENPEASMFFLQLPAKLPIVKQSPKSEGPQTARS------TDPADKSCSLDELPA 221

Query: 62  GFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILT 121
           GFMGK+LVY+SGAVKLKLGD IYDVS+G +C FAQDV AIN E K CC VGEL KR I+T
Sbjct: 222 GFMGKMLVYKSGAVKLKLGDTIYDVSAGSNCIFAQDVVAINAEEKHCCSVGELGKRVIIT 281

Query: 122 PDVDSMLKNIEDL 135
           PDVDS+L  + DL
Sbjct: 282 PDVDSLLDRMSDL 288

[Close]

BLAST of Cla97C03G065430.1 vs. Swiss-Prot
Match: sp|Q5E9Z7|RPC4_BOVIN (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 38/131 (29.01%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 11  ETDIFFLQLPPMVPVTKQSSTVEGMGAANSSE--------QSKGSEPR--QKTCSMNELP 70
           E ++ FLQLP  +P    +  ++ +     SE        Q K  E R  + TC++ +L 
Sbjct: 263 EEELLFLQLPDSLPGQPPTQDIKPIKTEVQSEDGQMVVIKQEKDREARLAENTCTLADLT 322

Query: 71  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKR 129
            G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ ++ +   R     ++G +  +
Sbjct: 323 EGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGDMTVLGHIKHK 382

[Close]

BLAST of Cla97C03G065430.1 vs. Swiss-Prot
Match: sp|P05423|RPC4_HUMAN (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 34/131 (25.95%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 11  ETDIFFLQLPPMV----------PVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 70
           E ++ FLQLP  +          P+  +    +G       E+ + ++  +  C++ +L 
Sbjct: 263 EEELLFLQLPDTLPGQPPTQDIKPIKTEVQGEDGQVVLIKQEKDREAKLAENACTLADLT 322

Query: 71  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKR 129
            G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ ++ +   R     ++G +  +
Sbjct: 323 EGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

[Close]

BLAST of Cla97C03G065430.1 vs. Swiss-Prot
Match: sp|Q91WD1|RPC4_MOUSE (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-09
Identity = 34/131 (25.95%), Postives = 66/131 (50.38%), Query Frame = 0


Query: 11  ETDIFFLQLPPMV----------PVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 70
           + ++ FLQLP  +          PV  +    +G       E+ + +   +  C++ +L 
Sbjct: 263 DEELLFLQLPDTLPGQPPTQDIKPVKTEVQGEDGQMVVIKQEKDREARLAENACTLADLT 322

Query: 71  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKR 129
            G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ ++ +   R     ++G +  +
Sbjct: 323 EGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

[Close]

BLAST of Cla97C03G065430.1 vs. Swiss-Prot
Match: sp|O74857|RPC4_SCHPO (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc53 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-07
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 60  PSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAI 119
           P+G +G L V++SG   L++G + + V SG DC F Q++A ++ + KR   +G   +R I
Sbjct: 266 PAGQIGVLRVHQSGKTTLEMGGVNFVVQSGSDCLFLQEIAVVDYDSKRIWNLGSFERRMI 325

Query: 120 LTPD 124
           ++PD
Sbjct: 326 VSPD 329

[Close]

BLAST of Cla97C03G065430.1 vs. Swiss-Prot
Match: sp|Q8T1V7|RPC4_DICDI (DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=44689 GN=polr3d PE=3 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05
Identity = 25/78 (32.05%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 55  SMNELPSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEG-----KRCC 114
           S+ E+PSG +G L +Y+SG   LK+G + YD+SSG    F ++V     +G       C 
Sbjct: 350 SIKEMPSGKLGTLKIYKSGKSILKIGTVEYDISSGDKLKFLEEVQCFQTKGGPDNSPTCY 409

Query: 115 IVGELSKRAILTPDVDSM 128
            +G  S+  +  P +  +
Sbjct: 410 TLGIPSQHLVAAPIISQI 427

[Close]

BLAST of Cla97C03G065430.1 vs. TAIR10
Match: AT5G09380.1 (RNA polymerase III RPC4)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 61/133 (45.86%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 2   DLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPS 61
           +LGL+E++ E  +FF++LP +   +  +  +E      +    KG    +KT  +  LP 
Sbjct: 147 NLGLMEDSGEQKMFFMRLPSVPLASTPTENLE------TRPNIKG-PVEKKTVDLKALPE 206

Query: 62  GFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILT 121
           G+MGKLLVY+SGAVK+KLG+++YDVS G+   FAQDV  +N E K CC+VG++ K A+LT
Sbjct: 207 GYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLT 266

Query: 122 PDVDSMLKNIEDL 135
           PD+DS+LK+IE++
Sbjct: 267 PDIDSILKDIENI 272

[Close]

BLAST of Cla97C03G065430.1 vs. TAIR10
Match: AT4G25180.1 (RNA polymerase III RPC4)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-18
Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 2   DLGLLE-ENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKG-SEPRQKTCSMNEL 61
           +LGL   ++ +  +F  ++P  +PV KQ  T       +  E S G S P         L
Sbjct: 181 ELGLTSVQHSKKQMFIFKIPDCLPVVKQ--TTGATTKRSVREYSSGISNP------FEGL 240

Query: 62  PSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAI 121
           P GFMGK+LVY+SGAVKLK+GD ++DVS G       DV AI+++G+ C  +G  +K   
Sbjct: 241 PEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGSSAKFVT 300

Query: 122 LTPDVDSMLKNIEDL 135
           +TPDV+S+L    D+
Sbjct: 301 VTPDVESLLNPASDM 307

The following BLAST results are available for this feature:

BLAST of Cla97C03G065430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147557.1	8.1e-60	89.55	DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia]	[more]
XP_004144123.1	1.8e-59	88.06	PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >KGN66...	[more]
XP_022968121.1	3.1e-59	87.31	uncharacterized protein LOC111467450 [Cucurbita maxima]	[more]
XP_022961283.1	1.5e-58	89.55	uncharacterized protein LOC111461827 [Cucurbita moschata]	[more]
XP_022988288.1	1.5e-58	89.55	uncharacterized protein LOC111485583 [Cucurbita maxima]	[more]

BLAST of Cla97C03G065430.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWX7\|A0A0A0LWX7_CUCSA	1.2e-59	88.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595870 PE=4 SV=1	[more]
tr\|A0A1S3BPR1\|A0A1S3BPR1_CUCME	1.7e-58	86.57	DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A1Q3BY25\|A0A1Q3BY25_CEPFO	8.9e-39	59.85	RNA_pol_Rpc4 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFO...	[more]
tr\|A0A2P5E7T5\|A0A2P5E7T5_9ROSA	4.4e-38	58.96	DNA-directed RNA polymerase III subunit RPC OS=Trema orientalis OX=63057 GN=TorR...	[more]
tr\|A0A2R6R430\|A0A2R6R430_ACTCH	5.8e-38	61.65	DNA-directed RNA polymerase III subunit like OS=Actinidia chinensis var. chinens...	[more]

BLAST of Cla97C03G065430.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5E9Z7\|RPC4_BOVIN	1.2e-09	29.01	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=...	[more]
sp\|P05423\|RPC4_HUMAN	5.8e-09	25.95	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P...	[more]
sp\|Q91WD1\|RPC4_MOUSE	7.6e-09	25.95	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ...	[more]
sp\|O74857\|RPC4_SCHPO	7.1e-07	37.50	DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strai...	[more]
sp\|Q8T1V7\|RPC4_DICDI	6.6e-05	32.05	DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of Cla97C03G065430.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09380.1	1.5e-28	45.86	RNA polymerase III RPC4	[more]
AT4G25180.1	2.5e-18	39.26	RNA polymerase III RPC4	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription from RNA polymerase III promoter

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	DNA-directed RNA polymerase III complex

Vocabulary: **INTERPRO**
Term	Definition
IPR007811	RPC4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription from RNA polymerase III promoter
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C03G065430	Cla97C03G065430	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C03G065430.1	Cla97C03G065430.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G065430.1.exon.1	Cla97C03G065430.1.exon.1	exon
Cla97C03G065430.1.exon.2	Cla97C03G065430.1.exon.2	exon
Cla97C03G065430.1.exon.3	Cla97C03G065430.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G065430.1.CDS.1	Cla97C03G065430.1.CDS.1	CDS
Cla97C03G065430.1.CDS.2	Cla97C03G065430.1.CDS.2	CDS
Cla97C03G065430.1.CDS.3	Cla97C03G065430.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 13..124 e-value: 4.0E-25 score: 88.9
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 2..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..54
None	No IPR available	PANTHER	PTHR13408:SF3	SUBFAMILY NOT NAMED	coord: 2..130