Cla97C03G065430 (gene) Watermelon (97103) v2

Overview
NameCla97C03G065430
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionDNA-directed RNA polymerase III subunit RPC4
LocationCla97Chr03 : 28892868 .. 28893620 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTGGTCTACTGGTTAGTCATTTGATCCTGTTGATGGCATATCCTGGGCCTCTTGTTTCCAATTTTACGTTTAATGGTTGATTGGCAGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTGAGTTTTATTTGTTTTTTGTTTCCTCCCATAAACATGTGCATGCTAAGTGTTTCGTGATCTACTTTTTTATCAACTTGAATGATCTCTTGAGATGAAATATTTTATATTAGAAGCATGGACCCTCTGCCTCAGATTTTTAAATTCTGCACTTGATGAAAATGCTTAACTACTTATGTCACAGGAAGTTCTTATCTATTTTAGGGCTATTCTTAGATGAAATCTTTTGGGATTTTGCGTTCCTTCTCACACCAGTTTTAAAATACGGGCAGGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA

mRNA sequence

ATGGATCTTGGTCTACTGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA

Coding sequence (CDS)

ATGGATCTTGGTCTACTGGAAGAGAATCCAGAGACAGACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAAAGCAATCTTCTACAGTAGAAGGCATGGGGGCAGCCAACAGCTCGGAACAAAGTAAAGGCTCAGAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTTCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGTTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGAATATTGAGGATTTATAA

Protein sequence

MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL
Homology
[Close]
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_022147557.1 (DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia])

HSP 1 Score: 239.2 bits (609), Expect = 8.1e-60
Identity = 120/134 (89.55%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           MDLGLLEENPET++FFLQ+PPMVPVTKQSSTVEGM AA+SSEQSKGS  RQ  CS+NELP
Sbjct: 160 MDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDI+YDVSSGMDCGFAQDVAAINVEGK CCIVGELSKRAIL
Sbjct: 220 SGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSMLK+IEDL
Sbjct: 280 TPDVDSMLKDIEDL 293

[Close]
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_004144123.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >KGN66283.1 hypothetical protein Csa_1G595870 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           M+LGLLEENPE D+ FLQLPPMVP+ KQSS+VE MG+ NSSEQ+K S+PRQKTCSMNELP
Sbjct: 160 MNLGLLEENPEADVLFLQLPPMVPMIKQSSSVEDMGSGNSSEQNKASQPRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG +GKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQ+VAAINVEGKRCCIVGELSKRAIL
Sbjct: 220 SGSIGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSMLKNIEDL
Sbjct: 280 TPDVDSMLKNIEDL 293

[Close]
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_022968121.1 (uncharacterized protein LOC111467450 [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 3.1e-59
Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           MDLGLLE+NPET+IFFLQLPPMVPVT+QSST EGM AANS EQ+K S+P QKTCS+NE P
Sbjct: 157 MDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNKDSQPPQKTCSLNEFP 216

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDI+YDVSSGMDCGFAQ++AAINVEGKRCCIVGELSKRA+L
Sbjct: 217 SGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVL 276

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSMLKNIEDL
Sbjct: 277 TPDVDSMLKNIEDL 290

[Close]
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_022961283.1 (uncharacterized protein LOC111461827 [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 1.5e-58
Identity = 120/134 (89.55%), Postives = 125/134 (93.28%), Query Frame = 0 

Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           +DLGLLEENPETDIFFLQLPPMVPV KQSSTVEG+GAANSSE    S+PRQKTCSMNELP
Sbjct: 160 VDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSE----SQPRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQDVAAINVEGK CC +GELSKRAIL
Sbjct: 220 SGSMGKLLVYRSGAVKLKLGDIIYDVSSGMQCGFAQDVAAINVEGKYCCFIGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDV+SMLKNIEDL
Sbjct: 280 TPDVESMLKNIEDL 289

[Close]
BLAST of Cla97C03G065430 vs. NCBI nr
Match: XP_022988288.1 (uncharacterized protein LOC111485583 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 1.5e-58
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           +DLGLLEENPETDIFFLQLPPMVPV KQSSTVEG+GAANSSE    S+PRQKTCSMNELP
Sbjct: 160 VDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSE----SQPRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQDVAAINVEGK CCI+GELSKRAIL
Sbjct: 220 SGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDV+SMLKN+EDL
Sbjct: 280 TPDVESMLKNMEDL 289

[Close]
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A0A0LWX7|A0A0A0LWX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595870 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           M+LGLLEENPE D+ FLQLPPMVP+ KQSS+VE MG+ NSSEQ+K S+PRQKTCSMNELP
Sbjct: 160 MNLGLLEENPEADVLFLQLPPMVPMIKQSSSVEDMGSGNSSEQNKASQPRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG +GKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQ+VAAINVEGKRCCIVGELSKRAIL
Sbjct: 220 SGSIGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSMLKNIEDL
Sbjct: 280 TPDVDSMLKNIEDL 293

[Close]
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A1S3BPR1|A0A1S3BPR1_CUCME (DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo OX=3656 GN=LOC103492360 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 116/134 (86.57%), Postives = 125/134 (93.28%), Query Frame = 0 

Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           M+LGLLEENPETD+FFLQLPPMVP+ KQSSTVE MG+ N SEQ+  S+ RQKTCSMNELP
Sbjct: 160 MNLGLLEENPETDVFFLQLPPMVPMIKQSSTVENMGSGNVSEQNSASQTRQKTCSMNELP 219

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           SG MGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAIL
Sbjct: 220 SGSMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINMEGKHCCIVGELSKRAIL 279

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDSML+NIEDL
Sbjct: 280 TPDVDSMLRNIEDL 293

[Close]
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A1Q3BY25|A0A1Q3BY25_CEPFO (RNA_pol_Rpc4 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_16270 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.9e-39
Identity = 79/132 (59.85%), Postives = 103/132 (78.03%), Query Frame = 0 

Query: 3   LGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPSG 62
           LGL+EEN E  + FLQLPP +P+TK+S+T +G    NSS   +    + KTC+++ELP+G
Sbjct: 166 LGLMEENQEQSMIFLQLPPAMPITKRSATEDGHEQTNSSRPRRDGRAKGKTCALDELPAG 225

Query: 63  FMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTP 122
           FMGK+LVY+SGAVKLKLG+I+YDV  G+DC FAQDV A+N   K CC+VGEL KRAILTP
Sbjct: 226 FMGKMLVYKSGAVKLKLGNILYDVGPGLDCVFAQDVVAVNTTEKHCCLVGELKKRAILTP 285

Query: 123 DVDSMLKNIEDL 135
           D+DS+L ++ DL
Sbjct: 286 DLDSILSSMADL 297

[Close]
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A2P5E7T5|A0A2P5E7T5_9ROSA (DNA-directed RNA polymerase III subunit RPC OS=Trema orientalis OX=63057 GN=TorRG33x02_225750 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.4e-38
Identity = 79/134 (58.96%), Postives = 104/134 (77.61%), Query Frame = 0 

Query: 1   MDLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 60
           ++LGL+EENPE  + FLQLPP +P+ K+S+T +G  A  SS     +   QK+C++NELP
Sbjct: 166 VELGLMEENPEPSMLFLQLPPTMPLIKRSATNDGQKATESSLAPVAANTLQKSCALNELP 225

Query: 61  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAIL 120
           +GFMGK+LVY+SGA+KL+ GD +YDVSSGMDC FAQDV AIN   K CCIV E++KR I+
Sbjct: 226 AGFMGKMLVYKSGAIKLRTGDTLYDVSSGMDCVFAQDVVAINNAEKHCCIVAEINKRVII 285

Query: 121 TPDVDSMLKNIEDL 135
           TPDVDS+L ++ DL
Sbjct: 286 TPDVDSILDSMADL 299

[Close]
BLAST of Cla97C03G065430 vs. TrEMBL
Match: tr|A0A2R6R430|A0A2R6R430_ACTCH (DNA-directed RNA polymerase III subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09818 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.8e-38
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 0 

Query: 2   DLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPS 61
           +LGL+EENPE  +FFLQLP  +P+ KQS   EG   A S      ++P  K+CS++ELP+
Sbjct: 162 ELGLMEENPEASMFFLQLPAKLPIVKQSPKSEGPQTARS------TDPADKSCSLDELPA 221

Query: 62  GFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILT 121
           GFMGK+LVY+SGAVKLKLGD IYDVS+G +C FAQDV AIN E K CC VGEL KR I+T
Sbjct: 222 GFMGKMLVYKSGAVKLKLGDTIYDVSAGSNCIFAQDVVAINAEEKHCCSVGELGKRVIIT 281

Query: 122 PDVDSMLKNIEDL 135
           PDVDS+L  + DL
Sbjct: 282 PDVDSLLDRMSDL 288

[Close]
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|Q5E9Z7|RPC4_BOVIN (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 38/131 (29.01%), Postives = 69/131 (52.67%), Query Frame = 0 

Query: 11  ETDIFFLQLPPMVPVTKQSSTVEGMGAANSSE--------QSKGSEPR--QKTCSMNELP 70
           E ++ FLQLP  +P    +  ++ +     SE        Q K  E R  + TC++ +L 
Sbjct: 263 EEELLFLQLPDSLPGQPPTQDIKPIKTEVQSEDGQMVVIKQEKDREARLAENTCTLADLT 322

Query: 71  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKR 129
            G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ ++ +   R     ++G +  +
Sbjct: 323 EGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGDMTVLGHIKHK 382

[Close]
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|P05423|RPC4_HUMAN (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 34/131 (25.95%), Postives = 67/131 (51.15%), Query Frame = 0 

Query: 11  ETDIFFLQLPPMV----------PVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 70
           E ++ FLQLP  +          P+  +    +G       E+ + ++  +  C++ +L 
Sbjct: 263 EEELLFLQLPDTLPGQPPTQDIKPIKTEVQGEDGQVVLIKQEKDREAKLAENACTLADLT 322

Query: 71  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKR 129
            G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ ++ +   R     ++G +  +
Sbjct: 323 EGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

[Close]
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|Q91WD1|RPC4_MOUSE (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-09
Identity = 34/131 (25.95%), Postives = 66/131 (50.38%), Query Frame = 0 

Query: 11  ETDIFFLQLPPMV----------PVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELP 70
           + ++ FLQLP  +          PV  +    +G       E+ + +   +  C++ +L 
Sbjct: 263 DEELLFLQLPDTLPGQPPTQDIKPVKTEVQGEDGQMVVIKQEKDREARLAENACTLADLT 322

Query: 71  SGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKR 129
            G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ ++ +   R     ++G +  +
Sbjct: 323 EGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

[Close]
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|O74857|RPC4_SCHPO (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc53 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-07
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 60  PSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAI 119
           P+G +G L V++SG   L++G + + V SG DC F Q++A ++ + KR   +G   +R I
Sbjct: 266 PAGQIGVLRVHQSGKTTLEMGGVNFVVQSGSDCLFLQEIAVVDYDSKRIWNLGSFERRMI 325

Query: 120 LTPD 124
           ++PD
Sbjct: 326 VSPD 329

[Close]
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match: sp|Q8T1V7|RPC4_DICDI (DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=44689 GN=polr3d PE=3 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05
Identity = 25/78 (32.05%), Postives = 41/78 (52.56%), Query Frame = 0 

Query: 55  SMNELPSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEG-----KRCC 114
           S+ E+PSG +G L +Y+SG   LK+G + YD+SSG    F ++V     +G       C 
Sbjct: 350 SIKEMPSGKLGTLKIYKSGKSILKIGTVEYDISSGDKLKFLEEVQCFQTKGGPDNSPTCY 409

Query: 115 IVGELSKRAILTPDVDSM 128
            +G  S+  +  P +  +
Sbjct: 410 TLGIPSQHLVAAPIISQI 427

[Close]
BLAST of Cla97C03G065430 vs. TAIR10
Match: AT5G09380.1 (RNA polymerase III RPC4)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 61/133 (45.86%), Postives = 92/133 (69.17%), Query Frame = 0 

Query: 2   DLGLLEENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKGSEPRQKTCSMNELPS 61
           +LGL+E++ E  +FF++LP +   +  +  +E      +    KG    +KT  +  LP 
Sbjct: 147 NLGLMEDSGEQKMFFMRLPSVPLASTPTENLE------TRPNIKG-PVEKKTVDLKALPE 206

Query: 62  GFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILT 121
           G+MGKLLVY+SGAVK+KLG+++YDVS G+   FAQDV  +N E K CC+VG++ K A+LT
Sbjct: 207 GYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLT 266

Query: 122 PDVDSMLKNIEDL 135
           PD+DS+LK+IE++
Sbjct: 267 PDIDSILKDIENI 272

[Close]
BLAST of Cla97C03G065430 vs. TAIR10
Match: AT4G25180.1 (RNA polymerase III RPC4)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-18
Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = 0 

Query: 2   DLGLLE-ENPETDIFFLQLPPMVPVTKQSSTVEGMGAANSSEQSKG-SEPRQKTCSMNEL 61
           +LGL   ++ +  +F  ++P  +PV KQ  T       +  E S G S P         L
Sbjct: 181 ELGLTSVQHSKKQMFIFKIPDCLPVVKQ--TTGATTKRSVREYSSGISNP------FEGL 240

Query: 62  PSGFMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAI 121
           P GFMGK+LVY+SGAVKLK+GD ++DVS G       DV AI+++G+ C  +G  +K   
Sbjct: 241 PEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGSSAKFVT 300

Query: 122 LTPDVDSMLKNIEDL 135
           +TPDV+S+L    D+
Sbjct: 301 VTPDVESLLNPASDM 307

The following BLAST results are available for this feature:
BLAST of Cla97C03G065430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147557.18.1e-6089.55DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia][more]
XP_004144123.11.8e-5988.06PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >KGN66... [more]
XP_022968121.13.1e-5987.31uncharacterized protein LOC111467450 [Cucurbita maxima][more]
XP_022961283.11.5e-5889.55uncharacterized protein LOC111461827 [Cucurbita moschata][more]
XP_022988288.11.5e-5889.55uncharacterized protein LOC111485583 [Cucurbita maxima][more]
BLAST of Cla97C03G065430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWX7|A0A0A0LWX7_CUCSA1.2e-5988.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595870 PE=4 SV=1[more]
tr|A0A1S3BPR1|A0A1S3BPR1_CUCME1.7e-5886.57DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A1Q3BY25|A0A1Q3BY25_CEPFO8.9e-3959.85RNA_pol_Rpc4 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFO... [more]
tr|A0A2P5E7T5|A0A2P5E7T5_9ROSA4.4e-3858.96DNA-directed RNA polymerase III subunit RPC OS=Trema orientalis OX=63057 GN=TorR... [more]
tr|A0A2R6R430|A0A2R6R430_ACTCH5.8e-3861.65DNA-directed RNA polymerase III subunit like OS=Actinidia chinensis var. chinens... [more]
BLAST of Cla97C03G065430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5E9Z7|RPC4_BOVIN1.2e-0929.01DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=... [more]
sp|P05423|RPC4_HUMAN5.8e-0925.95DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P... [more]
sp|Q91WD1|RPC4_MOUSE7.6e-0925.95DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ... [more]
sp|O74857|RPC4_SCHPO7.1e-0737.50DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strai... [more]
sp|Q8T1V7|RPC4_DICDI6.6e-0532.05DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=4468... [more]
BLAST of Cla97C03G065430 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09380.11.5e-2845.86RNA polymerase III RPC4[more]
AT4G25180.12.5e-1839.26RNA polymerase III RPC4[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription from RNA polymerase III promoter
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005666DNA-directed RNA polymerase III complex
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006383 transcription from RNA polymerase III promoter
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G065430.1Cla97C03G065430.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007811DNA-directed RNA polymerase III subunit RPC4PFAMPF05132RNA_pol_Rpc4coord: 13..124
e-value: 4.0E-25
score: 88.9
IPR007811DNA-directed RNA polymerase III subunit RPC4PANTHERPTHR13408DNA-DIRECTED RNA POLYMERASE IIIcoord: 2..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..54
NoneNo IPR availablePANTHERPTHR13408:SF3SUBFAMILY NOT NAMEDcoord: 2..130

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G065430CmaCh11G007230Cucurbita maxima (Rimu)cmawmbB115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G065430Watermelon (97103) v2wmbwmbB066
Cla97C03G065430Watermelon (97103) v2wmbwmbB122
Cla97C03G065430Silver-seed gourdcarwmbB0094
Cla97C03G065430Silver-seed gourdcarwmbB0593
Cla97C03G065430Silver-seed gourdcarwmbB0626
Cla97C03G065430Silver-seed gourdcarwmbB0806
Cla97C03G065430Silver-seed gourdcarwmbB0925
Cla97C03G065430Silver-seed gourdcarwmbB1086
Cla97C03G065430Cucumber (Gy14) v2cgybwmbB041
Cla97C03G065430Cucumber (Gy14) v2cgybwmbB123
Cla97C03G065430Cucumber (Gy14) v2cgybwmbB275
Cla97C03G065430Cucumber (Gy14) v2cgybwmbB507
Cla97C03G065430Cucumber (Gy14) v1cgywmbB168
Cla97C03G065430Cucumber (Gy14) v1cgywmbB241
Cla97C03G065430Cucumber (Gy14) v1cgywmbB614
Cla97C03G065430Cucurbita maxima (Rimu)cmawmbB064
Cla97C03G065430Cucurbita maxima (Rimu)cmawmbB365
Cla97C03G065430Cucurbita maxima (Rimu)cmawmbB466
Cla97C03G065430Cucurbita maxima (Rimu)cmawmbB814
Cla97C03G065430Cucurbita maxima (Rimu)cmawmbB913
Cla97C03G065430Cucurbita moschata (Rifu)cmowmbB051
Cla97C03G065430Cucurbita moschata (Rifu)cmowmbB100
Cla97C03G065430Cucurbita moschata (Rifu)cmowmbB349
Cla97C03G065430Cucurbita moschata (Rifu)cmowmbB885
Cla97C03G065430Wild cucumber (PI 183967)cpiwmbB043
Cla97C03G065430Wild cucumber (PI 183967)cpiwmbB132
Cla97C03G065430Wild cucumber (PI 183967)cpiwmbB297
Cla97C03G065430Wild cucumber (PI 183967)cpiwmbB560
Cla97C03G065430Cucumber (Chinese Long) v3cucwmbB041
Cla97C03G065430Cucumber (Chinese Long) v3cucwmbB133
Cla97C03G065430Cucumber (Chinese Long) v3cucwmbB296
Cla97C03G065430Cucumber (Chinese Long) v3cucwmbB557
Cla97C03G065430Cucumber (Chinese Long) v2cuwmbB042
Cla97C03G065430Cucumber (Chinese Long) v2cuwmbB130
Cla97C03G065430Cucumber (Chinese Long) v2cuwmbB290
Cla97C03G065430Cucumber (Chinese Long) v2cuwmbB535
Cla97C03G065430Bottle gourd (USVL1VR-Ls)lsiwmbB091
Cla97C03G065430Bottle gourd (USVL1VR-Ls)lsiwmbB179
Cla97C03G065430Bottle gourd (USVL1VR-Ls)lsiwmbB279
Cla97C03G065430Bottle gourd (USVL1VR-Ls)lsiwmbB365
Cla97C03G065430Melon (DHL92) v3.6.1medwmbB174
Cla97C03G065430Melon (DHL92) v3.6.1medwmbB235
Cla97C03G065430Melon (DHL92) v3.6.1medwmbB370
Cla97C03G065430Melon (DHL92) v3.6.1medwmbB471
Cla97C03G065430Melon (DHL92) v3.5.1mewmbB188
Cla97C03G065430Melon (DHL92) v3.5.1mewmbB249
Cla97C03G065430Melon (DHL92) v3.5.1mewmbB379
Cla97C03G065430Melon (DHL92) v3.5.1mewmbB478
Cla97C03G065430Watermelon (Charleston Gray)wcgwmbB016
Cla97C03G065430Watermelon (Charleston Gray)wcgwmbB069
Cla97C03G065430Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G065430Watermelon (97103) v1wmwmbB022
Cla97C03G065430Watermelon (97103) v1wmwmbB125
Cla97C03G065430Watermelon (97103) v1wmwmbB369
Cla97C03G065430Wax gourdwgowmbB133
Cla97C03G065430Wax gourdwgowmbB568
Cla97C03G065430Wax gourdwgowmbB569
Cla97C03G065430Wax gourdwgowmbB630