Cla97C03G062460.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G062460.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	NADH dehydrogenase subunit 2
Location	Cla97Chr03 : 23241776 .. 23244345 (-)
Sequence length	1257

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAATCTGAACTCAACCCTGTCGCTCTTCTTTCTTTCCTCGCGGGCAGGAAGCACACCAGCTGCGTGCCTTGCGTGATTCTACTGTGTTTTTTGCACTTGACTGGGTGGACAGTTGACCGGAAGAGAACTTCGATTCGCCCGGCCAGCAGGCGGGCGGCGTGCTTATCTTATGTGACAACACTACAGAGCGAGTGGCTCTTCTAGGCGGGCTGCTGTGTGACAACACTACAGAGAAAGCGGCGCTTTCGTGTAACATGGTATTGCTTCCTTGCATGCCCGCTTTCAAGGGTCAAATAGGACTAGTCGTACGCAGCAACCTAGGTCTAAGAAAATGGTAAGCGACGTTTATTAGAAGGGTAAGCCAAGTCCGGTAGGTCAAAATTGAGGGGTCTAGTGGTCTAATAATATTACTGAATAATATCTCTCATTAGGGAAGAAATAGCCCAGAACGTTCATTAGTGTACTGCAACCGCTAGGAGAATTCAAATAATAATCCAGTTCCTAGAACATCGTACAAAGATAAGGGAGAAATATGAGATATGCCCTATACCCAGGACTAGCTATCTGACATATTCGATTGATTTTCGTACTGACTGAAGAAGACAAAATATCAGGTGCCAATGAAGGTCTATTTCCTTCATCAATCTCGTATATAAGTCTTTGAGATATCAATGGAATGAATGTGGTTTACCAAGGAAATGGCAGGCATTTCGTGAGATGTTCTACCTTTTCCGGCATTACATGCATAAGTAGCCTCATTTCAAATCATGTTTGAGCCTATGTTCAAACCAAACCCACCCCTATTTGTTTGTTTGAATAAGGCTAGAAAGAATGCCCGCCAAGTTCAGATAAGGAAATGCTTCCCCCAACCATTAAAGGAAAGGCTCGACGAAGGGAGGGGAAGGAAAACGCTTTCGGAGATCGAGATTGGATTTCTTTTTCATCAAAAACGAAGAAGGCCGAGGATGGCCTACGGTGCGTGTTATCTGAAGGGAACACGCTTTTTCGACCGCGGTGTGGTATGATTGCCGGGCCCTCTCCTCGTTCCGCCCGCTGGCCTATTAGGTAGGATAGCAGTCTGAGGGCTTTGCCTGCCCTTTCTCATAAAGAATTCCGGCTTGGCCCGGGAAAGCGCTGGCAACAAAAGAAAGGAAGGGGTCCATGTAGCTGCTGCGCCCGCCCCCTTCTTAGTCAATGGGGCAGCAGGTTCGGCATCCACTAGAAAAGAGAGAATCCACTTCAGATAACCACGCCTCTGCTAGGCAGCGTGTGGAATGGCCGAGAGCGGACCTTTTTGGATATATAATCCAAGTCGAGAGTGGAGTTACGGAAACAGCCGTCTGATGGAAAACGACTTTCACGTTCGGTTCAGAGAGCACTTTTTTCGTTGAGAATTCCTCGTTCCCTTTCGTGTGAATTCCCCAGCGGCGAATTCGAAACTTGTGGGGCCCTATCTATTCCATCTCTCAAGCCCCGAAGAAAACCCCCCTCCCCTTCGGACTCCATATCTCTTTTGACTCTATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAGCATTCCTTTCTATTGCGCCTAAAATCTCTATTTTTGCTAATATTTCACGTGTTTCTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTTCTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGGGTGGAGTCGAGCTATTTATTGGCAGCTTCGCCTATCTATTCTATTATGGCCGGCTTGGAGACAGAAGAGGAAGACCATCATCCCTATCCGGGTACGATCATAGCTTTATTCATTCGTTGAACCTTGGGGATAACCATTAGCATTGAGGTCAATCACCACACCACCTCTATCATACATACGACATTCCATTCCGCGAGAGTGCATGGTCAACACACACCTAAAGCGCCTACGTTCCGCTTGCAGCCAATACAACCACAACCTAACTTGCACGAGATTCTACAACCGAAACTACTGGTAGTCTCGAGGGGACTCCTCCTATAATAGTTAGCAGTACTGAACAAGCGAGTCATCGGTCCGGAGAAAGAAAAGGACCTCCTTTGAAAAAAAAAGGAACTCGCTTTCCTCTCCATCAATAAATGGACCATTTGTTACGGAGACACAAGACAAACCTAGAAAGCATTTTTTCCGCAAATCATCTCGAGGCTTTCAAACAAGGGCATCCAAGCAATTGGTATCCCATTGAAACATAGAAACCATAGATTCGCGTCGCCTACTTGCTTCAAGCACAAATGGAATGGCTGATCATTCATTGAATTCTATGAAGTTTTTAAGACTTCACTAATCAGGCTTACACTTTTGAGTTCATAATGAATGAAATTCACCCCCGGATGAAGATCAAATCTCCCCTCCTTTTTACTAAACCATGGGGAGCCCCGAGTAGTTTACCGGGCAAATTGAGTTGTCGTGACGATACCCTTCTTTTCTTAGTGGAAGATCGGAAAAGACTTCTCTTCATCACGAGACTGATCGGATCTGCCGTAGACACCCGAGAGACCTCCACAAGGCAGACTCAAAGA

mRNA sequence

ATGGTCAAATCTGAACTCAACCCTGTCGCTCTTCTTTCTTTCCTCGCGGGCAGGAAGCACACCAGCTGCGTGCCTTGCGTGATTCTACTGTGTTTTTTGCACTTGACTGGGTGGACAGTTGACCGGAAGAGAACTTCGATTCGCCCGGCCAGCAGGCGGGCGGCGTGCTTATCTTATAAAGAATGCCCGCCAAGTTCAGATAAGGAAATGCTTCCCCCAACCATTAAAGGAAAGGCTCGACGAAGGGAGGGGAAGGAAAACGCTTTCGGAGATCGAGATTGGATTTCTTTTTCATCAAAAACGAAGAAGGCCGAGGATGGCCTACGGTGCGTGTTATCTGAAGGGAACACGCTTTTTCGACCGCGGTGTGGTATGATTGCCGGGCCCTCTCCTCGTTCCGCCCGCTGGCCTATTAGTCTGAGGGCTTTGCCTGCCCTTTCTCATAAAGAATTCCGGCTTGGCCCGGGAAAGCGCTGGCAACAAAAGAAAGGAAGGGGTCCATGTAGCTGCTGCGCCCGCCCCCTTCTTAGTCAATGGGGCAGCAGAGTGGAGTTACGGAAACAGCCGTCTGATGGAAAACGACTTTCACGTTCGGTTCAGAGAGCACTTTTTTCGTTGAGAATTCCTCGTTCCCTTTCGTGTGAATTCCCCAGCGGCGAATTCGAAACTTGTGGGGCCCTATCTATTCCATCTCTCAAGCCCCGAAGAAAACCCCCCTCCCCTTCGGACTCCATATCTCTTTTGACTCTATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAGCATTCCTTTCTATTGCGCCTAAAATCTCTATTTTTGCTAATATTTCACGTGTTTCTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTTCTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGGGTGGAGTCGAGCTATTTATTGGCAGCTTCGCCTATCTATTCTATTATGGCCGGCTTGGAGACAGAAGAGGAAGACCATCATCCCTATCCGGGCTTACACTTTTGAGTTCATAATGAATGAAATTCACCCCCGGATGAAGATCAAATCTCCCCTCCTTTTTACTAAACCATGGGGAGCCCCGAGTAGTTTACCGGGCAAATTGAGTTGTCGTGACGATACCCTTCTTTTCTTAGTGGAAGATCGGAAAAGACTTCTCTTCATCACGAGACTGATCGGATCTGCCGTAGACACCCGAGAGACCTCCACAAGGCAGACTCAAAGA

Coding sequence (CDS)

ATGGTCAAATCTGAACTCAACCCTGTCGCTCTTCTTTCTTTCCTCGCGGGCAGGAAGCACACCAGCTGCGTGCCTTGCGTGATTCTACTGTGTTTTTTGCACTTGACTGGGTGGACAGTTGACCGGAAGAGAACTTCGATTCGCCCGGCCAGCAGGCGGGCGGCGTGCTTATCTTATAAAGAATGCCCGCCAAGTTCAGATAAGGAAATGCTTCCCCCAACCATTAAAGGAAAGGCTCGACGAAGGGAGGGGAAGGAAAACGCTTTCGGAGATCGAGATTGGATTTCTTTTTCATCAAAAACGAAGAAGGCCGAGGATGGCCTACGGTGCGTGTTATCTGAAGGGAACACGCTTTTTCGACCGCGGTGTGGTATGATTGCCGGGCCCTCTCCTCGTTCCGCCCGCTGGCCTATTAGTCTGAGGGCTTTGCCTGCCCTTTCTCATAAAGAATTCCGGCTTGGCCCGGGAAAGCGCTGGCAACAAAAGAAAGGAAGGGGTCCATGTAGCTGCTGCGCCCGCCCCCTTCTTAGTCAATGGGGCAGCAGAGTGGAGTTACGGAAACAGCCGTCTGATGGAAAACGACTTTCACGTTCGGTTCAGAGAGCACTTTTTTCGTTGAGAATTCCTCGTTCCCTTTCGTGTGAATTCCCCAGCGGCGAATTCGAAACTTGTGGGGCCCTATCTATTCCATCTCTCAAGCCCCGAAGAAAACCCCCCTCCCCTTCGGACTCCATATCTCTTTTGACTCTATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAGCATTCCTTTCTATTGCGCCTAAAATCTCTATTTTTGCTAATATTTCACGTGTTTCTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTTCTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGGGTGGAGTCGAGCTATTTATTGGCAGCTTCGCCTATCTATTCTATTATGGCCGGCTTGGAGACAGAAGAGGAAGACCATCATCCCTATCCGGGCTTACACTTTTGAGTTCATAATGAATGAAATTCACCCCCGGATGAAGATCAAATCTCCCCTCCTTTTTACTAAACCATGGGGAGCCCCGAGTAGTTTACCGGGCAAATTGAGTTGTCGTGACGATACCCTTCTTTTCTTAGTGGAAGATCGGAAAAGACTTCTCTTCATCACGAGACTGATCGGATCTGCCGTAGACACCCGAGAGACCTCCACAAGGCAGACTCAAAGA

Protein sequence

MVKSELNPVALLSFLAGRKHTSCVPCVILLCFLHLTGWTVDRKRTSIRPASRRAACLSYKECPPSSDKEMLPPTIKGKARRREGKENAFGDRDWISFSSKTKKAEDGLRCVLSEGNTLFRPRCGMIAGPSPRSARWPISLRALPALSHKEFRLGPGKRWQQKKGRGPCSCCARPLLSQWGSRVELRKQPSDGKRLSRSVQRALFSLRIPRSLSCEFPSGEFETCGALSIPSLKPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIASMILGALGWSRAIYWQLRLSILLWPAWRQKRKTIIPIRAYTFEFIMNEIHPRMKIKSPLLFTKPWGAPSSLPGKLSCRDDTLLFLVEDRKRLLFITRLIGSAVDTRETSTRQTQR

Homology

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BLAST of Cla97C03G062460.1 vs. NCBI nr
Match: XP_024449890.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112326444, partial [Populus trichocarpa])

HSP 1 Score: 247.7 bits (631), Expect = 7.1e-62
Identity = 146/235 (62.13%), Postives = 160/235 (68.09%), Query Frame = 0


Query: 82  REGKENAFGDRDWISFSSKTKKAEDGLRCVLSEGNTLFRPRCGMIAGPSPRSARWPISLR 141
           R GKEN  GDRD+I FSSKTKK EDGLRCVLSEG  LFRPR     GPSPR ARWPI + 
Sbjct: 37  RRGKENTCGDRDFICFSSKTKKTEDGLRCVLSEG--LFRPR--WYXGPSPRCARWPIGIA 96

Query: 142 ALPALSHKEFRLGPGKRWQQKKGRGPCSCCARPLLSQWGSRVELRKQPSDGKR-----LS 201
           A                       G C     PL       + ++K  S+ ++      +
Sbjct: 97  AF----------------------GLC----LPL------XIRIKKSASNNRKEGVYEAA 156

Query: 202 RSVQRALFSLRIPRSLSCEFPSGEFETCGALSIPSLKPRRKPPSPSDSISLLTLYMWAPD 261
           R +Q ALF L+IPRSLSCEFPS +F+TCGALSIPSLKPR KP SPSD + LLTLYMWAPD
Sbjct: 157 RPLQIALFLLKIPRSLSCEFPSDKFKTCGALSIPSLKPRIKPHSPSDYLILLTLYMWAPD 216

Query: 262 IYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           IYEGSPT VTAFL IAPKI I ANIS VSIYGSYGATLQQIF FCSIASMILGAL
Sbjct: 217 IYEGSPTSVTAFLFIAPKIFISANISCVSIYGSYGATLQQIFXFCSIASMILGAL 235

[Close]

BLAST of Cla97C03G062460.1 vs. NCBI nr
Match: PRQ15618.1 (putative NADH:ubiquinone reductase (H(+)-translocating) (mitochondrion) [Rosa chinensis])

HSP 1 Score: 235.0 bits (598), Expect = 4.8e-58
Identity = 142/211 (67.30%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 125 MIAGPSPRSARWPISLRALP-ALSHKEFRLGPGKRWQQKKG---------------RGPC 184
           MIAGPSPRSAR PI + AL   L  K+          +K+G                G  
Sbjct: 1   MIAGPSPRSARRPIGIAALGLCLPFKKGSARESAGNNRKEGVHVAAAPAPFLVNGAAGSA 60

Query: 185 SC-------CARPLLSQWGSRVELRKQPSDGKRLSRSVQRALFSLRIPRSLSCEFPSGEF 244
           S         + PLL   GS VELR+QPSDGK+LSRSVQRALFSLRIPRSLSCEFP  EF
Sbjct: 61  STIKERIRFLSEPLL---GSVVELREQPSDGKQLSRSVQRALFSLRIPRSLSCEFPCNEF 120

Query: 245 ETCGALSIPSL-KPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFAN 304
           +TCGALSI SL +  +K PSPSDS SLLTLYMWAPDIYEGSPTPVTAFLSIAPKISI AN
Sbjct: 121 QTCGALSIYSLSRAPKKTPSPSDSTSLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISAN 180

Query: 305 ISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           ISRVSIYGSYGATLQQIFFFCSIASMILGAL
Sbjct: 181 ISRVSIYGSYGATLQQIFFFCSIASMILGAL 208

[Close]

BLAST of Cla97C03G062460.1 vs. NCBI nr
Match: CBI23503.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-56
Identity = 135/219 (61.64%), Postives = 141/219 (64.38%), Query Frame = 0


Query: 94  WISFSSKTKKAEDGLRCVLSEGNTLFRPRCGMIAGPSPRSARWPISLRALPALSHKEFRL 153
           +I FSSKTKKAEDGLRC                             LRALPAL +KEFRL
Sbjct: 165 FICFSSKTKKAEDGLRC-----------------------------LRALPALYNKEFRL 224

Query: 154 GPGKRWQQKKGRGPCSCCARPLLSQWGSRVELRKQPSDGKRLSRSVQRALFSLRIPRSLS 213
           GPGKRWQQ+KGRGPCSCCARPLLSQWGSR                     F +   R   
Sbjct: 225 GPGKRWQQQKGRGPCSCCARPLLSQWGSR---------------------FGIYYKR--- 284

Query: 214 CEFPSGEFETCGALSIPSL-KPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIA 273
                   E    ++ P L  PRRK PSPSDSISLLTLYMWAPDIYEGSPTPVTAFL IA
Sbjct: 285 --------ENPLQITTPLLGSPRRKAPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLFIA 322

Query: 274 PKISIFANISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           PKISI ANISRVSIYGSYGATLQQIFFFCSIASMILGAL
Sbjct: 345 PKISISANISRVSIYGSYGATLQQIFFFCSIASMILGAL 322

[Close]

BLAST of Cla97C03G062460.1 vs. NCBI nr
Match: PIA41049.1 (hypothetical protein AQUCO_02300080v1 [Aquilegia coerulea])

HSP 1 Score: 181.0 bits (458), Expect = 8.2e-42
Identity = 104/172 (60.47%), Postives = 113/172 (65.70%), Query Frame = 0


Query: 140 LRALPALSHKEFRLGPGKRWQQKKGRGPCSCCARPLLSQWGSRVELRKQPSDGKRLSRSV 199
           LRALPALS+KEFRLGPGKRWQQ+KGRGPCSCCARPL S++G   + R+ P          
Sbjct: 64  LRALPALSNKEFRLGPGKRWQQQKGRGPCSCCARPLSSRFGIYYKKRENPLQ-------- 123

Query: 200 QRALFSLRIPRSLSCEFPSGEFETCGALSIPSLKPRRKPPSPSDSISLLTLYMWAPDIYE 259
                +  +P S                      PRRKPPSPSDSISLLTLYMWAPDIYE
Sbjct: 124 ----ITTPLPGS----------------------PRRKPPSPSDSISLLTLYMWAPDIYE 183

Query: 260 GSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           GSPTPVTAFLSIAPKISI A            +TLQQIFFFCSIASMILGAL
Sbjct: 184 GSPTPVTAFLSIAPKISISAI-----------STLQQIFFFCSIASMILGAL 190

[Close]

BLAST of Cla97C03G062460.1 vs. NCBI nr
Match: OTF84697.1 (putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit (mitochondrion) [Helianthus annuus])

HSP 1 Score: 178.7 bits (452), Expect = 4.1e-41
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 219 GEFETCGALSIPSLKPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIF 278
           GEF+TCGALSIPSL+PRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISI 
Sbjct: 32  GEFKTCGALSIPSLEPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIS 91

Query: 279 ANISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           ANISR+SIYGSYGATLQQIFFFCSIASMILGAL
Sbjct: 92  ANISRLSIYGSYGATLQQIFFFCSIASMILGAL 124

[Close]

BLAST of Cla97C03G062460.1 vs. TrEMBL
Match: tr|A0A2P6P115|A0A2P6P115_ROSCH (Putative NADH:ubiquinone reductase (H(+)-translocating) OS=Rosa chinensis OX=74649 GN=RchiOBHm_MTg0498511 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 3.2e-58
Identity = 142/211 (67.30%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 125 MIAGPSPRSARWPISLRALP-ALSHKEFRLGPGKRWQQKKG---------------RGPC 184
           MIAGPSPRSAR PI + AL   L  K+          +K+G                G  
Sbjct: 1   MIAGPSPRSARRPIGIAALGLCLPFKKGSARESAGNNRKEGVHVAAAPAPFLVNGAAGSA 60

Query: 185 SC-------CARPLLSQWGSRVELRKQPSDGKRLSRSVQRALFSLRIPRSLSCEFPSGEF 244
           S         + PLL   GS VELR+QPSDGK+LSRSVQRALFSLRIPRSLSCEFP  EF
Sbjct: 61  STIKERIRFLSEPLL---GSVVELREQPSDGKQLSRSVQRALFSLRIPRSLSCEFPCNEF 120

Query: 245 ETCGALSIPSL-KPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFAN 304
           +TCGALSI SL +  +K PSPSDS SLLTLYMWAPDIYEGSPTPVTAFLSIAPKISI AN
Sbjct: 121 QTCGALSIYSLSRAPKKTPSPSDSTSLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISAN 180

Query: 305 ISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           ISRVSIYGSYGATLQQIFFFCSIASMILGAL
Sbjct: 181 ISRVSIYGSYGATLQQIFFFCSIASMILGAL 208

[Close]

BLAST of Cla97C03G062460.1 vs. TrEMBL
Match: tr|F6H891|F6H891_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0505g00030 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56
Identity = 135/219 (61.64%), Postives = 141/219 (64.38%), Query Frame = 0


Query: 94  WISFSSKTKKAEDGLRCVLSEGNTLFRPRCGMIAGPSPRSARWPISLRALPALSHKEFRL 153
           +I FSSKTKKAEDGLRC                             LRALPAL +KEFRL
Sbjct: 165 FICFSSKTKKAEDGLRC-----------------------------LRALPALYNKEFRL 224

Query: 154 GPGKRWQQKKGRGPCSCCARPLLSQWGSRVELRKQPSDGKRLSRSVQRALFSLRIPRSLS 213
           GPGKRWQQ+KGRGPCSCCARPLLSQWGSR                     F +   R   
Sbjct: 225 GPGKRWQQQKGRGPCSCCARPLLSQWGSR---------------------FGIYYKR--- 284

Query: 214 CEFPSGEFETCGALSIPSL-KPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIA 273
                   E    ++ P L  PRRK PSPSDSISLLTLYMWAPDIYEGSPTPVTAFL IA
Sbjct: 285 --------ENPLQITTPLLGSPRRKAPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLFIA 322

Query: 274 PKISIFANISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           PKISI ANISRVSIYGSYGATLQQIFFFCSIASMILGAL
Sbjct: 345 PKISISANISRVSIYGSYGATLQQIFFFCSIASMILGAL 322

[Close]

BLAST of Cla97C03G062460.1 vs. TrEMBL
Match: tr|A0A2G5DBZ0|A0A2G5DBZ0_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02300080v1 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 5.4e-42
Identity = 104/172 (60.47%), Postives = 113/172 (65.70%), Query Frame = 0


Query: 140 LRALPALSHKEFRLGPGKRWQQKKGRGPCSCCARPLLSQWGSRVELRKQPSDGKRLSRSV 199
           LRALPALS+KEFRLGPGKRWQQ+KGRGPCSCCARPL S++G   + R+ P          
Sbjct: 64  LRALPALSNKEFRLGPGKRWQQQKGRGPCSCCARPLSSRFGIYYKKRENPLQ-------- 123

Query: 200 QRALFSLRIPRSLSCEFPSGEFETCGALSIPSLKPRRKPPSPSDSISLLTLYMWAPDIYE 259
                +  +P S                      PRRKPPSPSDSISLLTLYMWAPDIYE
Sbjct: 124 ----ITTPLPGS----------------------PRRKPPSPSDSISLLTLYMWAPDIYE 183

Query: 260 GSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           GSPTPVTAFLSIAPKISI A            +TLQQIFFFCSIASMILGAL
Sbjct: 184 GSPTPVTAFLSIAPKISISAI-----------STLQQIFFFCSIASMILGAL 190

[Close]

BLAST of Cla97C03G062460.1 vs. TrEMBL
Match: tr|A0A1Y3BX49|A0A1Y3BX49_HELAN (Putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit OS=Helianthus annuus OX=4232 GN=HannXRQ_MTg0579071 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.7e-41
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 219 GEFETCGALSIPSLKPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIF 278
           GEF+TCGALSIPSL+PRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISI 
Sbjct: 32  GEFKTCGALSIPSLEPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIS 91

Query: 279 ANISRVSIYGSYGATLQQIFFFCSIASMILGAL 312
           ANISR+SIYGSYGATLQQIFFFCSIASMILGAL
Sbjct: 92  ANISRLSIYGSYGATLQQIFFFCSIASMILGAL 124

[Close]

BLAST of Cla97C03G062460.1 vs. TrEMBL
Match: tr|A0A0D2NAB2|A0A0D2NAB2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G164600 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 104/199 (52.26%), Postives = 110/199 (55.28%), Query Frame = 0


Query: 117 TLFRPRCGMIAGPSPRSARWPISLRA----LPALSHKEFRLGPGKRWQQKKGRGPCSCCA 176
           T F  R GMIAG SPRSARWPI + A    LP +              +K+G    +  A
Sbjct: 11  TRFFDRGGMIAGASPRSARWPIGIAAFGLCLPFIIKNSGSARESAGNNRKEGVHVTAAPA 70

Query: 177 RPLLSQWGSRVELRKQPSDGKRLSRSVQRALFSLRIPRSLSCEFPSGEFETCGALSIPSL 236
            PLL+QWGS                                                   
Sbjct: 71  -PLLNQWGS--------------------------------------------------- 130

Query: 237 KPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGA 296
              RK PSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISI ANISRVSIYGSYGA
Sbjct: 131 ---RKTPSPSDSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVSIYGSYGA 154

Query: 297 TLQQIFFFCSIASMILGAL 312
           TLQQIFFFCSIASMILGAL
Sbjct: 191 TLQQIFFFCSIASMILGAL 154

[Close]

BLAST of Cla97C03G062460.1 vs. Swiss-Prot
Match: sp|P15688|NU2M_BETVU (NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris OX=161934 GN=ND2 PE=3 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 3.4e-39
Identity = 124/276 (44.93%), Postives = 139/276 (50.36%), Query Frame = 0


Query: 70  MLPPTIKGKARRREGKENAFGDRDWISFSSKTKKAEDGLRCVLSEGNTLFRPRCGMIAGP 129
           ML  TIKGKARRR  KE AFGDRD+++FSSKTKK E+    +  E  T F  R GMI GP
Sbjct: 1   MLSLTIKGKARRR--KERAFGDRDFLTFSSKTKKTEN--VNLSFEKGTRFFDRGGMIFGP 60

Query: 130 SPRSARWPISLRA----LPALSHKEFRLGPGKRWQQKKGRGPCSCCARPLLSQWGSRVEL 189
           SPRSARWPI + A    L  L              +K+G    +  A  L+++       
Sbjct: 61  SPRSARWPIGIAAFGLCLLFLIKNSGSARESAGNNRKEGVHVAAASAPFLVNRAAGSATT 120

Query: 190 RKQPSDGK-------------------------------------RLSRSVQRALFSLRI 249
            K+    K                                         SVQRALFSLRI
Sbjct: 121 TKERIHFKITNASAMAACGMAGSDLFGYIIQVESGVTGTAGLMENNFHGSVQRALFSLRI 180

Query: 250 PRSLSCEFPSGEFETCGALSIPSLKPRRKPPSPSDSISLLTLYMWAPDIYEGSPTPVTAF 305
            RSL         +     SIPS  P  K P P         YMWAPDIYEGSPTPVTAF
Sbjct: 181 LRSLRVN-SLARIQNFWGPSIPSSSP-AKTPLPFGLNIFFDSYMWAPDIYEGSPTPVTAF 240

[Close]

BLAST of Cla97C03G062460.1 vs. Swiss-Prot
Match: sp|O05000|NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana OX=3702 GN=ND2 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-25
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 245 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIA 304
           I+ +  +MWAPDIYEGSPTPVTAFLSIAPKISIFANI RV IYGSYGATLQQIFFFCSIA
Sbjct: 241 ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGATLQQIFFFCSIA 300

Query: 305 SMILGAL 312
           SMILGAL
Sbjct: 301 SMILGAL 307

[Close]

BLAST of Cla97C03G062460.1 vs. Swiss-Prot
Match: sp|P93401|NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteroana OX=3950 GN=ND2 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-25
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 245 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIA 304
           I+ +  +MWAPDIYEGSPTPVTAFLSIAPKISIFANI RV IYGSYGATLQQIFFFCSIA
Sbjct: 230 ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGATLQQIFFFCSIA 289

Query: 305 SMILGAL 312
           SMILGAL
Sbjct: 290 SMILGAL 296

[Close]

BLAST of Cla97C03G062460.1 vs. Swiss-Prot
Match: sp|P26846|NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha OX=3197 GN=ND2 PE=3 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 8.7e-19
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 245 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIA 304
           I+ +  +MWAPD+YEGSPT VTAF SIAPKISI AN+ RV IY  Y  T QQ+FFFCSIA
Sbjct: 231 ITAVPFHMWAPDVYEGSPTIVTAFFSIAPKISILANMLRVFIYSFYDPTWQQLFFFCSIA 290

Query: 305 SMILGAL 312
           SMILGAL
Sbjct: 291 SMILGAL 297

[Close]

BLAST of Cla97C03G062460.1 vs. Swiss-Prot
Match: sp|Q2NA79|NUON_ERYLH (NADH-quinone oxidoreductase subunit N OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=nuoN PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-10
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 245 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSI--YGSYGATLQQIFFFCS 304
           I+ +  +MW PD+YEG+PTPVT F + APK++  A  +RV++  +G      QQI  F +
Sbjct: 222 IAAVPFHMWTPDVYEGAPTPVTTFFATAPKVAAVALTARVALSPFGEQTEAWQQIVIFAA 281

Query: 305 IASMILGALG 313
           +AS++LGALG
Sbjct: 282 LASIVLGALG 291

[Close]

BLAST of Cla97C03G062460.1 vs. TAIR10
Match: ATMG00285.1 (NADH dehydrogenase 2A)

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-26
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 245 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIA 304
           I+ +  +MWAPDIYEGSPTPVTAFLSIAPKISI ANI RVSIYGSYGATLQQIFFFCSIA
Sbjct: 241 ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYGSYGATLQQIFFFCSIA 300

Query: 305 SMILGAL 312
           SMILGAL
Sbjct: 301 SMILGAL 307

[Close]

BLAST of Cla97C03G062460.1 vs. TAIR10
Match: ATMG01320.1 (NADH dehydrogenase 2B)

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-26
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 245 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIA 304
           I+ +  +MWAPDIYEGSPTPVTAFLSIAPKISI ANI RVSIYGSYGATLQQIFFFCSIA
Sbjct: 241 ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYGSYGATLQQIFFFCSIA 300

Query: 305 SMILGAL 312
           SMILGAL
Sbjct: 301 SMILGAL 307

[Close]

BLAST of Cla97C03G062460.1 vs. TAIR10
Match: AT2G07689.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-25
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 252 MWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFFFCSIASMILGAL 311
           MWAPDIYEGSPTPVTAFLSIAPKISI ANI RVSIYGSYGATLQQIFFFCSIASMILGAL
Sbjct: 1   MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYGSYGATLQQIFFFCSIASMILGAL 60

[Close]

BLAST of Cla97C03G062460.1 vs. TAIR10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-06
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 245 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQ--QIFFFCS 304
           +SL   + W PD+YEGSPTPV AFLS+  K++  A+ +R+     Y ++ +   +    +
Sbjct: 121 LSLAPSHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILA 180

Query: 305 IASMILGAL 312
           I SMI G L
Sbjct: 181 ILSMIFGNL 189

[Close]

BLAST of Cla97C03G062460.1 vs. TAIR10
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-06
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 245 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQ--QIFFFCS 304
           +SL   + W PD+YEGSPTPV AFLS+  K++  A+ +R+     Y ++ +   +    +
Sbjct: 121 LSLAPSHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILA 180

Query: 305 IASMILGAL 312
           I SMI G L
Sbjct: 181 ILSMIFGNL 189

The following BLAST results are available for this feature:

BLAST of Cla97C03G062460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024449890.1	7.1e-62	62.13	LOW QUALITY PROTEIN: uncharacterized protein LOC112326444, partial [Populus tric...	[more]
PRQ15618.1	4.8e-58	67.30	putative NADH:ubiquinone reductase (H(+)-translocating) (mitochondrion) [Rosa ch...	[more]
CBI23503.3	1.5e-56	61.64	unnamed protein product, partial [Vitis vinifera]	[more]
PIA41049.1	8.2e-42	60.47	hypothetical protein AQUCO_02300080v1 [Aquilegia coerulea]	[more]
OTF84697.1	4.1e-41	95.70	putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit (mitochond...	[more]

BLAST of Cla97C03G062460.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P6P115\|A0A2P6P115_ROSCH	3.2e-58	67.30	Putative NADH:ubiquinone reductase (H(+)-translocating) OS=Rosa chinensis OX=746...	[more]
tr\|F6H891\|F6H891_VITVI	1.0e-56	61.64	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0505g00030 PE=4 SV=...	[more]
tr\|A0A2G5DBZ0\|A0A2G5DBZ0_AQUCA	5.4e-42	60.47	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02300080v1 PE=4...	[more]
tr\|A0A1Y3BX49\|A0A1Y3BX49_HELAN	2.7e-41	95.70	Putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit OS=Heliant...	[more]
tr\|A0A0D2NAB2\|A0A0D2NAB2_GOSRA	1.7e-35	52.26	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G164600 PE=4 ...	[more]

BLAST of Cla97C03G062460.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P15688\|NU2M_BETVU	3.4e-39	44.93	NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris OX=161934 GN=ND2 PE=3 SV...	[more]
sp\|O05000\|NU2M_ARATH	2.8e-25	88.06	NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana OX=3702 GN=ND2 PE...	[more]
sp\|P93401\|NU2M_OENBE	2.8e-25	88.06	NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteroana OX=3950 GN=ND2 PE...	[more]
sp\|P26846\|NU2M_MARPO	8.7e-19	71.64	NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha OX=3197 GN=ND2 P...	[more]
sp\|Q2NA79\|NUON_ERYLH	2.5e-10	45.71	NADH-quinone oxidoreductase subunit N OS=Erythrobacter litoralis (strain HTCC259...	[more]

BLAST of Cla97C03G062460.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00285.1	2.6e-26	88.06	NADH dehydrogenase 2A	[more]
ATMG01320.1	2.6e-26	88.06	NADH dehydrogenase 2B	[more]
AT2G07689.1	1.7e-25	96.67	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG00890.1	5.2e-06	39.13	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	5.2e-06	39.13	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001750	ND/Mrp_mem

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C03G062460	Cla97C03G062460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C03G062460.1	Cla97C03G062460.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G062460.1.CDS.5	Cla97C03G062460.1.CDS.5	CDS
Cla97C03G062460.1.CDS.4	Cla97C03G062460.1.CDS.4	CDS
Cla97C03G062460.1.CDS.3	Cla97C03G062460.1.CDS.3	CDS
Cla97C03G062460.1.CDS.2	Cla97C03G062460.1.CDS.2	CDS
Cla97C03G062460.1.CDS.1	Cla97C03G062460.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G062460.1.exon.5	Cla97C03G062460.1.exon.5	exon
Cla97C03G062460.1.exon.4	Cla97C03G062460.1.exon.4	exon
Cla97C03G062460.1.exon.3	Cla97C03G062460.1.exon.3	exon
Cla97C03G062460.1.exon.2	Cla97C03G062460.1.exon.2	exon
Cla97C03G062460.1.exon.1	Cla97C03G062460.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 246..311 e-value: 4.9E-14 score: 52.1
None	No IPR available	PANTHER	PTHR22773	NADH DEHYDROGENASE	coord: 245..311
None	No IPR available	PANTHER	PTHR22773:SF101	NADH-UBIQUINONE/PLASTOQUINONE COMPLEX I PROTEIN	coord: 245..311