Carg03965-RA (mRNA) Silver-seed gourd

Overview
NameCarg03965-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane protein
LocationCucurbita_argyrosperma_scaffold_011 : 1048703 .. 1051979 (-)
Sequence length709
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGTAAATTTGTAAAATCCTCGATTTCGGTTTTGTATTGTTCATTCCTTCGGTCTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTATTAATTCCCTGACTCCGATCTCTTCGATCTTGAAATTGTGTTCAAACTCAAGTCTCGTGTTTTCTCACTTCCTTGCAATATTTGTAGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTGTATGATTCGTTCCTGAAAGAAACTTTAGGGAAACCCTAATTTGTTAATTGTTGTGTGACTGATGTTGTGGAGGCGGCCAAAAAGAGCCACATAACAATGTTTCTCTGTAAGTATCTGTCAGTGTGTACTCTCAGAATTTTTGTTTGGTATCATAAGAATGTGGAAATGTTTCTTACAAATCAATTTTGATTTGTATGGTTATTCAATTTATTGAAATTTGAAGGATCTTGTTTGGTTTTCGTTTTGGAAAGCTGATTTATTTGCTGATTTATACTAATTATATGAACAAACTTGGCTTTTATAGGACTTCTCCAAACTCATTTAGTTAATGTAGGTCTTAAGTTGTCGCTTGAAAGCATGTTTCCATTATGATAGGTGAAGAATCACCAGGTCAAGAAGTGAATGAAAGCATTTTATTCTGAAATCCATTGTTGAATACACTTTATTCTGAAATGTATTGTTGAAGAGTCTGTTTTACGATATTTAAAATCTACAATTCTGCTATTGAATTTCTTTATGAAAAAGAAAAAAAAACATTTGGGAACAAATATCTTGCTCGATTTCTCACTAGGAGTAGCTTCCTTGTACCATGGAGAACGAGTTGCTGCAGCTTCTTGTGGACTAAGAGATCCATTAACTTGTCTCCTACCAGAGTTCGTTAATAGTGACAAAATTTTTGTAGCTAGTCAAATTTTACCTGAAGTAGTGCTACTTTTTCCTAACGAAGCTTTGCTCAACTCAATTGACATAAAGTAGGTTTCTTCGACCAACAAATCAAAGGTTTGAATTTCTTGCCCCCCTTATTGTTGAACTCAAAACATGTGGTTAACTACTTTTGTATAGTCGGCAGGGTCTATCTGGGCTCTATTAGTCAAGAGTTCTCAATGTAAATTTCAGATCAACAGATCAATATGCCGTTTTGCTAGATTTTTAGTTGTTTTGGATCAAGATCACCTACAGTGTTGATCAAACGAGTCTTTTGTGAAATTATTTAATAAATATTAGTTTAAATAGTGGTGTCACTGAATGAATGAAATTATGTTTTCAGCGAAAAATCTAGTGATGAAGAAAGTGATTATTCAAGATACTCTATGAAAGAGGTAGATTTGGAGTTCCTTCTTAATACTAAATATAAATAGAAAGTTCTTACTAAATAATCTCATTTGCATGAAGCCTAAAAAATTTGTGATGGTTAATTTTCAGACCAACACCAATTGAGGCTTGATGGAATCGTAATTTGAATTTGATTTATTATAGGTTTGATATTTCCTTAAGATATATGAGTCTTAGATTTACATATGTAGTATTCCAGGTAAAAACGTCAGTGTTATTATCTTTGATATATCTGTTAAGTGAATATAATTATGAGTCTTAGATTTACATCTATAGTATCCCAGGTAAAAACGTCAGTGTTATTATCTTTGATATATCTGTTAAGTGAATATTAGAGCTTTATATCACGAGTATAATTGCTAGATCTTGTCCTCCATACCTTTCGGCCCAAATTATTGTTGGGATTCAAACCATCTTGGATTGACTTAGTGGTCAATAAGAGTCGTGTAAATAATAAAGAGCATAGACAAAATGAATTTAAGTCAAGATGATCATGTACTTAAGATTTATTATCTTAGGATCAAATGGTTGTAACCGGGGCGTGTGCAAGCCGATCCAAACACTCATGGATGTTATAAATATGTGTGTATGTCTATATATGTATATATGCAATCTTTTTTTTGGAGGAAGGCATTTACACACACCTAACGTCAGCCATGGTGTGTTCCTTCATATGGGTATTCATCTTGGCTGTCATGATCCCCATTTTGTCATCTTCTTTTCGCTTTGGTACGTTAGGAATAAAGACAACCATCAGGTTTTGGTTTGGATTTGTTATTGTTTTCCAGCTCTTTTCCAAATAAACTTATCAAATTCTTAAACATATATTTGCAGTGATTAGTTAGTAAATCTTCTTTTTTGTTGTTATTTAATCATCAAATTGATTTAGTTCATGTCCAACAATGAATTCATTGACATAATCATCATGGAAAATATGTAATTTGCATCCTGTCCTCTTGTTTTCTGTTGAATAGCAAAAGAATATCATCCCTTCAGCTAGCTGCTGTCTTTTGTTCTCTTATAGTAAATGAGACTCTCTGTATGGTAACAAAAAGCATATTGCTTTCTCCATTATATATAAAGTTCATCTCTAGCTGCTAGAAGAACTGTATTTACATAGGTAAATAATTAACACTTTGTGGTAATTTCCTCACTCTTTATGTGCATCAGTAGAAGCAATATGTGGTAAGAAATTGATTCTATTGAAGTGTGGATTAGGTTCTTTCCTTCAAAGGGATTCTAGTTGTCTGTTCAAGCAATCTATATAGCTCTACTTTTTGCAATGCTGTGATCATAATTGTGTTTATCCAATCTATCTGTATAATCACTTACTTCAATTTTCTGTTGTAATCCTGCTTTTCCAGCTAAGGCAGATCCCAGGAATTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCGTTAGAAGTTTTATTCCTGTAGTATGAGGAAACCATATGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCGTGTTTTTGTTTTCTTTACTCGTTTGATTTTACTAATCTAATTCTAAGAAAATTCTGAGAAAATGGGAGGATTTCACCCGGAGCTGGTTGCTTCCTCTTGGTATCAATTCTAAAGATAGGTTGATATTAGTTTCATCACATTTTTGTATCAATGTGGTAATCAGTTCGACTCGGCCGGGTTTGGAGGTTTAATCAAAAGCAAAACCAATTGAATCTAGAGAAGTATTAAGTCGAGAATCTCTCATTACCCG

mRNA sequence

GAGGTAAATTTGTAAAATCCTCGATTTCGGTTTTGTATTGTTCATTCCTTCGGTCTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTCTAAGGCAGATCCCAGGAATTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCGTTAGAAGTTTTATTCCTGTAGTATGAGGAAACCATATGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCGTGTTTTTGTTTTCTTTACTCGTTTGATTTTACTAATCTAATTCTAAGAAAATTCTGAGAAAATGGGAGGATTTCACCCGGAGCTGGTTGCTTCCTCTTGGTATCAATTCTAAAGATAGGTTGATATTAGTTTCATCACATTTTTGTATCAATGTGGTAATCAGTTCGACTCGGCCGGGTTTGGAGGTTTAATCAAAAGCAAAACCAATTGAATCTAGAGAAGTATTAAGTCGAGAATCTCTCATTACCCG

Coding sequence (CDS)

ATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGA

Protein sequence

MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH
Homology
[Close]
BLAST of Carg03965-RA vs. NCBI nr
Match: PON94578.1 (Transmembrane protein [Trema orientalis])

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-13
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+A+PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]
BLAST of Carg03965-RA vs. NCBI nr
Match: EYU22029.1 (hypothetical protein MIMGU_mgv11b017472mg [Erythranthe guttata])

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-13
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MAN Q++SI PWFLE +PL++V LI AHV ALVYWIYRLAT+KQP RTK H
Sbjct: 1  MANPQQASIRPWFLELVPLLVVFLIIAHVLALVYWIYRLATEKQPQRTKRH 51

[Close]
BLAST of Carg03965-RA vs. NCBI nr
Match: PON73170.1 (Transmembrane protein [Parasponia andersonii])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+ +PL++VLLIA HVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]
BLAST of Carg03965-RA vs. NCBI nr
Match: ESR63474.1 (hypothetical protein CICLE_v10010135mg [Citrus clementina] >ESR63475.1 hypothetical protein CICLE_v10010135mg [Citrus clementina])

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ  ++ PWFL+ +PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 50

[Close]
BLAST of Carg03965-RA vs. NCBI nr
Match: KDO67367.1 (hypothetical protein CISIN_1g044409mg [Citrus sinensis])

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 1   MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
           MANEQ  ++ PWFL+ +PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 100 MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 149

[Close]
BLAST of Carg03965-RA vs. TAIR10
Match: AT5G10745.1 (unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-09
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQK--QPPRTKTH 52
          MA EQ   + PWFL+ +P ++VLL AAHV AL YWIYRLAT +  Q  R K H
Sbjct: 1  MAKEQH--LRPWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQRGKFH 51

[Close]
BLAST of Carg03965-RA vs. TAIR10
Match: AT5G24980.1 (unknown protein)

HSP 1 Score: 43.5 bits (101), Expect = 4.5e-05
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0 

Query: 14 LEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTK 50
          ++ +P ++V L A HV ALVYWIYRLA+ + P R K
Sbjct: 5  VDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

[Close]
BLAST of Carg03965-RA vs. TrEMBL
Match: tr|A0A2P5F9W8|A0A2P5F9W8_9ROSA (Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096130 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-13
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+A+PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]
BLAST of Carg03965-RA vs. TrEMBL
Match: tr|A0A2N9FKX1|A0A2N9FKX1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-13
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 1  MANEQR-SSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ+ SS+ PWFL+ +PL++V+LIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQQSSSLRPWFLDVVPLMVVVLIAAHVFALVYWIYRLATEKQPQRRKAH 52

[Close]
BLAST of Carg03965-RA vs. TrEMBL
Match: tr|A0A022Q329|A0A022Q329_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv11b017472mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-13
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MAN Q++SI PWFLE +PL++V LI AHV ALVYWIYRLAT+KQP RTK H
Sbjct: 1  MANPQQASIRPWFLELVPLLVVFLIIAHVLALVYWIYRLATEKQPQRTKRH 51

[Close]
BLAST of Carg03965-RA vs. TrEMBL
Match: tr|A0A2P5DIT2|A0A2P5DIT2_PARAD (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+ +PL++VLLIA HVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]
BLAST of Carg03965-RA vs. TrEMBL
Match: tr|V4UGZ6|V4UGZ6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010135mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ  ++ PWFL+ +PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 50

The following BLAST results are available for this feature:
BLAST of Carg03965-RA vs. NCBI nr
Match NameE-valueIdentityDescription
PON94578.14.8e-1374.51Transmembrane protein [Trema orientalis][more]
EYU22029.18.2e-1372.55hypothetical protein MIMGU_mgv11b017472mg [Erythranthe guttata][more]
PON73170.12.4e-1270.59Transmembrane protein [Parasponia andersonii][more]
ESR63474.14.1e-1272.55hypothetical protein CICLE_v10010135mg [Citrus clementina] >ESR63475.1 hypotheti... [more]
KDO67367.14.1e-1272.55hypothetical protein CISIN_1g044409mg [Citrus sinensis][more]
BLAST of Carg03965-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT5G10745.18.8e-0956.60unknown protein[more]
AT5G24980.14.5e-0552.78unknown protein[more]
BLAST of Carg03965-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg03965-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5F9W8|A0A2P5F9W8_9ROSA3.2e-1374.51Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096130 PE=4 SV=... [more]
tr|A0A2N9FKX1|A0A2N9FKX1_FAGSY5.5e-1373.08Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1[more]
tr|A0A022Q329|A0A022Q329_ERYGU5.5e-1372.55Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv11b017472mg P... [more]
tr|A0A2P5DIT2|A0A2P5DIT2_PARAD1.6e-1270.59Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4... [more]
tr|V4UGZ6|V4UGZ6_9ROSI2.7e-1272.55Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010135mg PE=4 ... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg03965Carg03965gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg03965-RACarg03965-RA-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03965-RA.three_prime_UTR.2Carg03965-RA.three_prime_UTR.2three_prime_UTR
Carg03965-RA.three_prime_UTR.1Carg03965-RA.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03965-RA.CDS.2Carg03965-RA.CDS.2CDS
Carg03965-RA.CDS.1Carg03965-RA.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03965-RA.five_prime_UTR.1Carg03965-RA.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03965-RA.exon.3Carg03965-RA.exon.3exon
Carg03965-RA.exon.2Carg03965-RA.exon.2exon
Carg03965-RA.exon.1Carg03965-RA.exon.1exon


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35755FAMILY NOT NAMEDcoord: 1..50