Carg03877-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03877-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	selenoprotein H
Location	Cucurbita_argyrosperma_scaffold_011 : 570078 .. 572764 (+)
Sequence length	887

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTCAACGGCCACGATCCATTCTCATCGTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGATAACAAAAGCGCGGGAAAGCCAAACCTAATCCATCCTATAAACTGTGTATCACTGCCAACCAACGGTCACATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAACTTTGGAGCCGATAAATCTCGTTTCTTCCATTACACTGAGTTGCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGGTAAGATTTTTTGGTTCCATTTCTTGCTTGGAAATGAATCGAAAATTGGTTCGATTAATTTGAAGTTCATGTTTCTAGGGTTTGAAGTTTCCTAGAAATCTGTAATAGTTCAAGCCTATCGCTAGCAGACATTGTCCTCTTCAGACTATCTCTTTCGGGCTTCCTCTCTCAAAGTTTTTCGTTCTCCTCTCCAATCGATGTGGAATCTCACAATCCATCTTCATTCGAGTCCTGTGTCATTGCTCTAGATTTTTAAAATGTGTTTACTAGAGAGAGGTTCTCTACGCATTGTTAGACGAACACGATTCTACACAATGGTATGATGATTTTGTCCACTTTGGGTGTAAGCTCTCATGGTTTTGCTTCCCAAAATGCTTCAATACCAATGGAGAGAGTATTCTTTGTTTATAAACCCATAATCATTCCCTAAATTTCCATCATCCAACACCTCCCCTTAATCGAGACTAAATTCCTTTAGAGTCATAGTCATTTTTTAGCCTTCAAAGAGGGGCTCGACTCCGATACCATTTTAGACGAACATGACTCTCCACAATATTGTGATATTGTCCACTTTGAGTGTAAGCTCTCGTGACTTTGTTTTGGGCATGCCTCGTACCAATGGATAGAGTATTCTTTGTTTATAAATCTATGATCATTCCCTAAATTAGCCGATGTAGGACTTCTATAATCCAATACACATAAAACGTTTTGTTCTCCCTCCAACTGATGTGGGACTTCACAATCCACCCCCATTTGGGGCCAGCGCCATCACTAGCACTCATTCCGCTCTCCAATCGATGGAATCTCACAATCCATCTCCTTCGAATTCCAATCCTCATTGGCTCTCGTTCCACTCTCCAATGGATGGAATCTCACCATCCATCTCCTTCAAGGTCCAGCATCCTCACCAACACTTATTATGCTCTCCAATCAACGTGGAATCTCATAATCCACTCGCTTTGACACCGCGTAGAGCGTGTTGGGCTCTGATTAAAGTAAGGGGCAATTGTTCCTCTTTGTTCTTGCATTTGCCTCTGCTTTTTGCAATGGAACTTCTAATGAATGAAAAGGAAAAGCACATTAGAAACATAGTGATTCTTTTTTCTTTCACATGTCATGTGCAGTGTTTGTTTTGTGACATTTTCCCCATTTTTTTGTTTGTTCCCTTTGTAGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGGTAATCTTTTGACTTCTTCAACTCTTACATGCTATGCTTAATAAAAAAACAATTAATTTGGGTTCTTTATTTTGGTAACCAAGCAGATTGTTCTTCGTTTTTCCTTCCATCTTGTAGAAGGTGGTGTAGGTTTTACTTTCCAAGCATAATGCTTTACTTTTTTAAGCTCTCATGTTCTCTGCTGGGTAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAAGTTAGAATTTGCACTCGGGAATCATTGATTAACTTTGAACTTTTAGGTTAGAGAAACATCGCAGGTATCAATGTATTCCATGATCAGATTACTGGACACACTGACCCATATCTCTACAATGATATGATATTATTCACTTTGATAAATTTCCATAACCTCTCCTTTCCTTACAAGAATGCTATCAATCCCCGAGAATATTGTGAAGGAAACTTAAAAGTATATGAAAGAAATTGATGTTGTTTTTCCCTCTTCTCATTTTGTTTTAATAATTATGCAGCCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGTAATCCTTTTATTTATTATTACTTTCTTGGAACAACCTTCAACTGTCTAGAAGTTTCCCATTTATTCTGATAAGTTCACACATAACCTCATTGCAACAATACTCGTTAGACAAGATCAATAAAGTCCCATATAACATCATCATACGTTGCGTCGTGTTAGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAATGAGAAAACCCTTGATG

mRNA sequence

CAGTCAACGGCCACGATCCATTCTCATCGTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGATAACAAAAGCGCGGGAAAGCCAAACCTAATCCATCCTATAAACTGTGTATCACTGCCAACCAACGGTCACATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAACTTTGGAGCCGATAAATCTCGTTTCTTCCATTACACTGAGTTGCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAACCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAATGAGAAAACCCTTGATG

Coding sequence (CDS)

ATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAACCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAA

Protein sequence

MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

Homology

[Close]

BLAST of Carg03877-RA vs. NCBI nr
Match: XP_023536837.1 (selenoprotein H-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 172/204 (84.31%), Postives = 173/204 (84.80%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVPASSR TRRSPRLAANSKADL VEEPVVKLPKRKKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPASSRATRRSPRLAANSKADLTVEEPVVKLPKRKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRA+EVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAIEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Carg03877-RA vs. NCBI nr
Match: XP_022950994.1 (selenoprotein H-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 311.2 bits (796), Expect = 2.6e-81
Identity = 172/204 (84.31%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Carg03877-RA vs. NCBI nr
Match: XP_023002520.1 (selenoprotein H-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 6.3e-80
Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVP SSRVTRRSPRLAANSKADL VEEPVVKLPK+KKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPVSSRVTRRSPRLAANSKADLTVEEPVVKLPKKKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENEKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPDKS                            RRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPDKS----------------------------RRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFT+MKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTQMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Carg03877-RA vs. NCBI nr
Match: XP_022950995.1 (selenoprotein H-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 260.0 bits (663), Expect = 6.8e-66
Identity = 145/177 (81.92%), Postives = 145/177 (81.92%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 178
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLL
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLL 149

[Close]

BLAST of Carg03877-RA vs. NCBI nr
Match: XP_023002521.1 (uncharacterized protein LOC111496337 isoform X2 [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 7.5e-65
Identity = 144/177 (81.36%), Postives = 145/177 (81.92%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVP SSRVTRRSPRLAANSKADL VEEPVVKLPK+KKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPVSSRVTRRSPRLAANSKADLTVEEPVVKLPKKKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENEKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 178
           ITVLLNPDKS                            RRGCFEIRSEDGEKFISLL
Sbjct: 121 ITVLLNPDKS----------------------------RRGCFEIRSEDGEKFISLL 149

[Close]

BLAST of Carg03877-RA vs. TAIR10
Match: AT2G24440.1 (selenium binding)

HSP 1 Score: 117.5 bits (293), Expect = 9.8e-27
Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 95  EHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADS 154
           EHCKQC+SFK+RA EV+ GLE+ VPGI V +NPD                          
Sbjct: 103 EHCKQCKSFKERANEVKEGLEEAVPGIIVTVNPD-------------------------- 162

Query: 155 RAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK 204
             KPRRGCFEIR E GE FISLL MKRPFT MKEL+MEEVI+DI+EKIK
Sbjct: 163 --KPRRGCFEIREEGGETFISLLAMKRPFTPMKELNMEEVIADIVEKIK 183

[Close]

BLAST of Carg03877-RA vs. TAIR10
Match: AT4G31360.1 (selenium binding)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-25
Identity = 59/112 (52.68%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 92  VVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFS 151
           +VIEHCKQC +FK RA++V+  LE  VPG+TV LNP+                       
Sbjct: 103 IVIEHCKQCNAFKTRAIQVKEALEGAVPGVTVSLNPE----------------------- 162

Query: 152 ADSRAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK 204
                KPRRGCFEIR E G+ FISLL+MKRPF  MK LDMEEVI DII+K+K
Sbjct: 163 -----KPRRGCFEIREEGGQTFISLLEMKRPFAPMKALDMEEVIEDIIKKVK 186

[Close]

BLAST of Carg03877-RA vs. TrEMBL
Match: tr|A0A1S3BBW1|A0A1S3BBW1_CUCME (selenoprotein H OS=Cucumis melo OX=3656 GN=LOC103488240 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 137/204 (67.16%), Postives = 149/204 (73.04%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAP+KRSK QE+E+A  KP PA+SRVTR S RLAANSKADL V E    LPK KKAKR P
Sbjct: 1   MAPRKRSKNQEEESAMEKPAPATSRVTRSSARLAANSKADLTVTE----LPKSKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGK EEVEN+   +D   EK   +AK+R VVIEHCKQCQSFKKRA++VQ GLE GVPG
Sbjct: 61  KENGKVEEVENKEVKVDVGLEKPDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDG+KFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGKKFISLLDMK 172

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDM+EVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMDEVISDIIEKIKG 172

[Close]

BLAST of Carg03877-RA vs. TrEMBL
Match: tr|A0A0A0LPC9|A0A0A0LPC9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379100 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.0e-57
Identity = 133/204 (65.20%), Postives = 147/204 (72.06%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAP+KR+K QE++    KP PA+SR+TR S RLAANSKADL V E    LPK KKAKR P
Sbjct: 1   MAPRKRTKNQEEDLVVEKPAPATSRLTRSSARLAANSKADLTVTE----LPKSKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGK EEVEN+   +D    KL  +AK+R VVIEHCKQCQSFKKRA++VQ GLE GVPG
Sbjct: 61  KENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 172

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKEL+M+EVISDIIEKIKG
Sbjct: 181 RPFTRMKELNMDEVISDIIEKIKG 172

[Close]

BLAST of Carg03877-RA vs. TrEMBL
Match: tr|A0A2I4E1T6|A0A2I4E1T6_9ROSI (uncharacterized protein LOC108985499 OS=Juglans regia OX=51240 GN=LOC108985499 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 101/204 (49.51%), Postives = 124/204 (60.78%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSK-ADLMVEEPVVKLPKRKKAKRG 60
           MAP+KR  +QE+    AKP   S+RVTR + + A N+  A+L+V+ P  +LPK+KKAK  
Sbjct: 1   MAPRKRGDVQEE---PAKP-KLSTRVTRSAAKRAGNTNLAELVVDWPQPELPKKKKAK-- 60

Query: 61  PKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVP 120
                KA   E +GED       L V AK + +VIEHCKQC SFK RA++V+ GLEKGV 
Sbjct: 61  -----KAVNKEVQGED------SLEV-AKAKTIVIEHCKQCNSFKTRAIQVKEGLEKGVF 120

Query: 121 GITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDM 180
           GITV++NPD                            KPRRGCFEIR E GE FISLLDM
Sbjct: 121 GITVVINPD----------------------------KPRRGCFEIREEGGETFISLLDM 158

Query: 181 KRPFTRMKELDMEEVISDIIEKIK 204
           KRPF  MK L+M +VISDI +KIK
Sbjct: 181 KRPFAPMKALNMGKVISDITDKIK 158

[Close]

BLAST of Carg03877-RA vs. TrEMBL
Match: tr|A0A2C9W3C5|A0A2C9W3C5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G002700 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29
Identity = 93/203 (45.81%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAP+KR    +DE        AS+RVTR S RLA    A      P+  LP RK+     
Sbjct: 1   MAPRKRKAEGQDEALK----HASARVTRSSTRLA---NAXXXXXVPMADLPIRKRXXXXX 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
                          ++A  E++  +   + +VIEHCKQC SFK RA +V+NGLE+ VPG
Sbjct: 61  XXXXXXXXXXXXXXXVEAKEEEITDDVTKKTIVIEHCKQCSSFKTRATQVKNGLERVVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           I VLLNPD                            KPRRGCFEIR E GEKFISLLDM 
Sbjct: 121 IIVLLNPD----------------------------KPRRGCFEIREEGGEKFISLLDMN 168

Query: 181 RPFTRMKELDMEEVISDIIEKIK 204
           RPF  MKELDM++VISDIIEKIK
Sbjct: 181 RPFKPMKELDMDKVISDIIEKIK 168

[Close]

BLAST of Carg03877-RA vs. TrEMBL
Match: tr|A0A2P5QPE0|A0A2P5QPE0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD26653 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.4e-29
Identity = 81/146 (55.48%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 72  EGEDLDAASEKLGVE---AKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPD 131
           +G   +AA E+L V    + N+ VV+EHCKQC SFK RA +V++GLEKGVP + VLLNP+
Sbjct: 64  DGAKAEAAPEELAVADGGSHNKTVVVEHCKQCNSFKTRAFQVRDGLEKGVPWVKVLLNPE 123

Query: 132 KSHSEVEVLEG----------NLEF-ATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 191
           K    V +LE           N+ F   L   F + +  +PRRGCFEIR E GE FISLL
Sbjct: 124 K----VVLLENFPPLPNLILLNVCFMVDLSSHFLSPNFQQPRRGCFEIREEGGETFISLL 183

Query: 192 DMKRPFTRMKELDMEEVISDIIEKIK 204
           DMKRPF  MKELDME+VISDIIEKIK
Sbjct: 184 DMKRPFKPMKELDMEKVISDIIEKIK 205

The following BLAST results are available for this feature:

BLAST of Carg03877-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536837.1	1.5e-81	84.31	selenoprotein H-like [Cucurbita pepo subsp. pepo]	[more]
XP_022950994.1	2.6e-81	84.31	selenoprotein H-like isoform X1 [Cucurbita moschata]	[more]
XP_023002520.1	6.3e-80	83.33	selenoprotein H-like isoform X1 [Cucurbita maxima]	[more]
XP_022950995.1	6.8e-66	81.92	selenoprotein H-like isoform X2 [Cucurbita moschata]	[more]
XP_023002521.1	7.5e-65	81.36	uncharacterized protein LOC111496337 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg03877-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24440.1	9.8e-27	57.80	selenium binding	[more]
AT4G31360.1	1.9e-25	52.68	selenium binding	[more]

BLAST of Carg03877-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03877-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBW1\|A0A1S3BBW1_CUCME	1.8e-59	67.16	selenoprotein H OS=Cucumis melo OX=3656 GN=LOC103488240 PE=4 SV=1	[more]
tr\|A0A0A0LPC9\|A0A0A0LPC9_CUCSA	1.0e-57	65.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379100 PE=4 SV=1	[more]
tr\|A0A2I4E1T6\|A0A2I4E1T6_9ROSI	1.6e-31	49.51	uncharacterized protein LOC108985499 OS=Juglans regia OX=51240 GN=LOC108985499 P...	[more]
tr\|A0A2C9W3C5\|A0A2C9W3C5_MANES	2.0e-29	45.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G002700 PE=4 SV=...	[more]
tr\|A0A2P5QPE0\|A0A2P5QPE0_GOSBA	4.4e-29	55.48	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD26653 PE=4 SV...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03877	Carg03877	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03877-RA	Carg03877-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03877-RA.exon.1	Carg03877-RA.exon.1	exon
Carg03877-RA.exon.2	Carg03877-RA.exon.2	exon
Carg03877-RA.exon.3	Carg03877-RA.exon.3	exon
Carg03877-RA.exon.4	Carg03877-RA.exon.4	exon
Carg03877-RA.exon.5	Carg03877-RA.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03877-RA.five_prime_UTR.1	Carg03877-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03877-RA.CDS.1	Carg03877-RA.CDS.1	CDS
Carg03877-RA.CDS.2	Carg03877-RA.CDS.2	CDS
Carg03877-RA.CDS.3	Carg03877-RA.CDS.3	CDS
Carg03877-RA.CDS.4	Carg03877-RA.CDS.4	CDS
Carg03877-RA.CDS.5	Carg03877-RA.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03877-RA.three_prime_UTR.1	Carg03877-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	PANTHER	PTHR33638	FAMILY NOT NAMED	coord: 1..130 coord: 156..203