Carg03877 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03877
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	selenoprotein H
Location	Cucurbita_argyrosperma_scaffold_011 : 570078 .. 572764 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTCAACGGCCACGATCCATTCTCATCGTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGATAACAAAAGCGCGGGAAAGCCAAACCTAATCCATCCTATAAACTGTGTATCACTGCCAACCAACGGTCACATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAACTTTGGAGCCGATAAATCTCGTTTCTTCCATTACACTGAGTTGCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGGTAAGATTTTTTGGTTCCATTTCTTGCTTGGAAATGAATCGAAAATTGGTTCGATTAATTTGAAGTTCATGTTTCTAGGGTTTGAAGTTTCCTAGAAATCTGTAATAGTTCAAGCCTATCGCTAGCAGACATTGTCCTCTTCAGACTATCTCTTTCGGGCTTCCTCTCTCAAAGTTTTTCGTTCTCCTCTCCAATCGATGTGGAATCTCACAATCCATCTTCATTCGAGTCCTGTGTCATTGCTCTAGATTTTTAAAATGTGTTTACTAGAGAGAGGTTCTCTACGCATTGTTAGACGAACACGATTCTACACAATGGTATGATGATTTTGTCCACTTTGGGTGTAAGCTCTCATGGTTTTGCTTCCCAAAATGCTTCAATACCAATGGAGAGAGTATTCTTTGTTTATAAACCCATAATCATTCCCTAAATTTCCATCATCCAACACCTCCCCTTAATCGAGACTAAATTCCTTTAGAGTCATAGTCATTTTTTAGCCTTCAAAGAGGGGCTCGACTCCGATACCATTTTAGACGAACATGACTCTCCACAATATTGTGATATTGTCCACTTTGAGTGTAAGCTCTCGTGACTTTGTTTTGGGCATGCCTCGTACCAATGGATAGAGTATTCTTTGTTTATAAATCTATGATCATTCCCTAAATTAGCCGATGTAGGACTTCTATAATCCAATACACATAAAACGTTTTGTTCTCCCTCCAACTGATGTGGGACTTCACAATCCACCCCCATTTGGGGCCAGCGCCATCACTAGCACTCATTCCGCTCTCCAATCGATGGAATCTCACAATCCATCTCCTTCGAATTCCAATCCTCATTGGCTCTCGTTCCACTCTCCAATGGATGGAATCTCACCATCCATCTCCTTCAAGGTCCAGCATCCTCACCAACACTTATTATGCTCTCCAATCAACGTGGAATCTCATAATCCACTCGCTTTGACACCGCGTAGAGCGTGTTGGGCTCTGATTAAAGTAAGGGGCAATTGTTCCTCTTTGTTCTTGCATTTGCCTCTGCTTTTTGCAATGGAACTTCTAATGAATGAAAAGGAAAAGCACATTAGAAACATAGTGATTCTTTTTTCTTTCACATGTCATGTGCAGTGTTTGTTTTGTGACATTTTCCCCATTTTTTTGTTTGTTCCCTTTGTAGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGGTAATCTTTTGACTTCTTCAACTCTTACATGCTATGCTTAATAAAAAAACAATTAATTTGGGTTCTTTATTTTGGTAACCAAGCAGATTGTTCTTCGTTTTTCCTTCCATCTTGTAGAAGGTGGTGTAGGTTTTACTTTCCAAGCATAATGCTTTACTTTTTTAAGCTCTCATGTTCTCTGCTGGGTAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAAGTTAGAATTTGCACTCGGGAATCATTGATTAACTTTGAACTTTTAGGTTAGAGAAACATCGCAGGTATCAATGTATTCCATGATCAGATTACTGGACACACTGACCCATATCTCTACAATGATATGATATTATTCACTTTGATAAATTTCCATAACCTCTCCTTTCCTTACAAGAATGCTATCAATCCCCGAGAATATTGTGAAGGAAACTTAAAAGTATATGAAAGAAATTGATGTTGTTTTTCCCTCTTCTCATTTTGTTTTAATAATTATGCAGCCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGTAATCCTTTTATTTATTATTACTTTCTTGGAACAACCTTCAACTGTCTAGAAGTTTCCCATTTATTCTGATAAGTTCACACATAACCTCATTGCAACAATACTCGTTAGACAAGATCAATAAAGTCCCATATAACATCATCATACGTTGCGTCGTGTTAGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAATGAGAAAACCCTTGATG

mRNA sequence

CAGTCAACGGCCACGATCCATTCTCATCGTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGATAACAAAAGCGCGGGAAAGCCAAACCTAATCCATCCTATAAACTGTGTATCACTGCCAACCAACGGTCACATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAACTTTGGAGCCGATAAATCTCGTTTCTTCCATTACACTGAGTTGCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAACCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAATGAGAAAACCCTTGATG

Coding sequence (CDS)

ATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAACCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAA

Protein sequence

MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

Homology

[Close]

BLAST of Carg03877 vs. NCBI nr
Match: XP_023536837.1 (selenoprotein H-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 172/204 (84.31%), Postives = 173/204 (84.80%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVPASSR TRRSPRLAANSKADL VEEPVVKLPKRKKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPASSRATRRSPRLAANSKADLTVEEPVVKLPKRKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRA+EVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAIEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Carg03877 vs. NCBI nr
Match: XP_022950994.1 (selenoprotein H-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 311.2 bits (796), Expect = 2.6e-81
Identity = 172/204 (84.31%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Carg03877 vs. NCBI nr
Match: XP_023002520.1 (selenoprotein H-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 6.3e-80
Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVP SSRVTRRSPRLAANSKADL VEEPVVKLPK+KKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPVSSRVTRRSPRLAANSKADLTVEEPVVKLPKKKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENEKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPDKS                            RRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPDKS----------------------------RRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFT+MKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTQMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Carg03877 vs. NCBI nr
Match: XP_022950995.1 (selenoprotein H-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 260.0 bits (663), Expect = 6.8e-66
Identity = 145/177 (81.92%), Postives = 145/177 (81.92%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 178
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLL
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLL 149

[Close]

BLAST of Carg03877 vs. NCBI nr
Match: XP_023002521.1 (uncharacterized protein LOC111496337 isoform X2 [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 7.5e-65
Identity = 144/177 (81.36%), Postives = 145/177 (81.92%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVP SSRVTRRSPRLAANSKADL VEEPVVKLPK+KKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPVSSRVTRRSPRLAANSKADLTVEEPVVKLPKKKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENEKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 178
           ITVLLNPDKS                            RRGCFEIRSEDGEKFISLL
Sbjct: 121 ITVLLNPDKS----------------------------RRGCFEIRSEDGEKFISLL 149

[Close]

BLAST of Carg03877 vs. TAIR10
Match: AT2G24440.1 (selenium binding)

HSP 1 Score: 117.5 bits (293), Expect = 9.8e-27
Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 95  EHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADS 154
           EHCKQC+SFK+RA EV+ GLE+ VPGI V +NPD                          
Sbjct: 103 EHCKQCKSFKERANEVKEGLEEAVPGIIVTVNPD-------------------------- 162

Query: 155 RAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK 204
             KPRRGCFEIR E GE FISLL MKRPFT MKEL+MEEVI+DI+EKIK
Sbjct: 163 --KPRRGCFEIREEGGETFISLLAMKRPFTPMKELNMEEVIADIVEKIK 183

[Close]

BLAST of Carg03877 vs. TAIR10
Match: AT4G31360.1 (selenium binding)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-25
Identity = 59/112 (52.68%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 92  VVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFS 151
           +VIEHCKQC +FK RA++V+  LE  VPG+TV LNP+                       
Sbjct: 103 IVIEHCKQCNAFKTRAIQVKEALEGAVPGVTVSLNPE----------------------- 162

Query: 152 ADSRAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK 204
                KPRRGCFEIR E G+ FISLL+MKRPF  MK LDMEEVI DII+K+K
Sbjct: 163 -----KPRRGCFEIREEGGQTFISLLEMKRPFAPMKALDMEEVIEDIIKKVK 186

[Close]

BLAST of Carg03877 vs. TrEMBL
Match: tr|A0A1S3BBW1|A0A1S3BBW1_CUCME (selenoprotein H OS=Cucumis melo OX=3656 GN=LOC103488240 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 137/204 (67.16%), Postives = 149/204 (73.04%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAP+KRSK QE+E+A  KP PA+SRVTR S RLAANSKADL V E    LPK KKAKR P
Sbjct: 1   MAPRKRSKNQEEESAMEKPAPATSRVTRSSARLAANSKADLTVTE----LPKSKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGK EEVEN+   +D   EK   +AK+R VVIEHCKQCQSFKKRA++VQ GLE GVPG
Sbjct: 61  KENGKVEEVENKEVKVDVGLEKPDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDG+KFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGKKFISLLDMK 172

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDM+EVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMDEVISDIIEKIKG 172

[Close]

BLAST of Carg03877 vs. TrEMBL
Match: tr|A0A0A0LPC9|A0A0A0LPC9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379100 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.0e-57
Identity = 133/204 (65.20%), Postives = 147/204 (72.06%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAP+KR+K QE++    KP PA+SR+TR S RLAANSKADL V E    LPK KKAKR P
Sbjct: 1   MAPRKRTKNQEEDLVVEKPAPATSRLTRSSARLAANSKADLTVTE----LPKSKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGK EEVEN+   +D    KL  +AK+R VVIEHCKQCQSFKKRA++VQ GLE GVPG
Sbjct: 61  KENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 172

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKEL+M+EVISDIIEKIKG
Sbjct: 181 RPFTRMKELNMDEVISDIIEKIKG 172

[Close]

BLAST of Carg03877 vs. TrEMBL
Match: tr|A0A2I4E1T6|A0A2I4E1T6_9ROSI (uncharacterized protein LOC108985499 OS=Juglans regia OX=51240 GN=LOC108985499 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 101/204 (49.51%), Postives = 124/204 (60.78%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSK-ADLMVEEPVVKLPKRKKAKRG 60
           MAP+KR  +QE+    AKP   S+RVTR + + A N+  A+L+V+ P  +LPK+KKAK  
Sbjct: 1   MAPRKRGDVQEE---PAKP-KLSTRVTRSAAKRAGNTNLAELVVDWPQPELPKKKKAK-- 60

Query: 61  PKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVP 120
                KA   E +GED       L V AK + +VIEHCKQC SFK RA++V+ GLEKGV 
Sbjct: 61  -----KAVNKEVQGED------SLEV-AKAKTIVIEHCKQCNSFKTRAIQVKEGLEKGVF 120

Query: 121 GITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDM 180
           GITV++NPD                            KPRRGCFEIR E GE FISLLDM
Sbjct: 121 GITVVINPD----------------------------KPRRGCFEIREEGGETFISLLDM 158

Query: 181 KRPFTRMKELDMEEVISDIIEKIK 204
           KRPF  MK L+M +VISDI +KIK
Sbjct: 181 KRPFAPMKALNMGKVISDITDKIK 158

[Close]

BLAST of Carg03877 vs. TrEMBL
Match: tr|A0A2C9W3C5|A0A2C9W3C5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G002700 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29
Identity = 93/203 (45.81%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAP+KR    +DE        AS+RVTR S RLA    A      P+  LP RK+     
Sbjct: 1   MAPRKRKAEGQDEALK----HASARVTRSSTRLA---NAXXXXXVPMADLPIRKRXXXXX 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
                          ++A  E++  +   + +VIEHCKQC SFK RA +V+NGLE+ VPG
Sbjct: 61  XXXXXXXXXXXXXXXVEAKEEEITDDVTKKTIVIEHCKQCSSFKTRATQVKNGLERVVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           I VLLNPD                            KPRRGCFEIR E GEKFISLLDM 
Sbjct: 121 IIVLLNPD----------------------------KPRRGCFEIREEGGEKFISLLDMN 168

Query: 181 RPFTRMKELDMEEVISDIIEKIK 204
           RPF  MKELDM++VISDIIEKIK
Sbjct: 181 RPFKPMKELDMDKVISDIIEKIK 168

[Close]

BLAST of Carg03877 vs. TrEMBL
Match: tr|A0A2P5QPE0|A0A2P5QPE0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD26653 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.4e-29
Identity = 81/146 (55.48%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 72  EGEDLDAASEKLGVE---AKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPD 131
           +G   +AA E+L V    + N+ VV+EHCKQC SFK RA +V++GLEKGVP + VLLNP+
Sbjct: 64  DGAKAEAAPEELAVADGGSHNKTVVVEHCKQCNSFKTRAFQVRDGLEKGVPWVKVLLNPE 123

Query: 132 KSHSEVEVLEG----------NLEF-ATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 191
           K    V +LE           N+ F   L   F + +  +PRRGCFEIR E GE FISLL
Sbjct: 124 K----VVLLENFPPLPNLILLNVCFMVDLSSHFLSPNFQQPRRGCFEIREEGGETFISLL 183

Query: 192 DMKRPFTRMKELDMEEVISDIIEKIK 204
           DMKRPF  MKELDME+VISDIIEKIK
Sbjct: 184 DMKRPFKPMKELDMEKVISDIIEKIK 205

The following BLAST results are available for this feature:

BLAST of Carg03877 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536837.1	1.5e-81	84.31	selenoprotein H-like [Cucurbita pepo subsp. pepo]	[more]
XP_022950994.1	2.6e-81	84.31	selenoprotein H-like isoform X1 [Cucurbita moschata]	[more]
XP_023002520.1	6.3e-80	83.33	selenoprotein H-like isoform X1 [Cucurbita maxima]	[more]
XP_022950995.1	6.8e-66	81.92	selenoprotein H-like isoform X2 [Cucurbita moschata]	[more]
XP_023002521.1	7.5e-65	81.36	uncharacterized protein LOC111496337 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg03877 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24440.1	9.8e-27	57.80	selenium binding	[more]
AT4G31360.1	1.9e-25	52.68	selenium binding	[more]

BLAST of Carg03877 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03877 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBW1\|A0A1S3BBW1_CUCME	1.8e-59	67.16	selenoprotein H OS=Cucumis melo OX=3656 GN=LOC103488240 PE=4 SV=1	[more]
tr\|A0A0A0LPC9\|A0A0A0LPC9_CUCSA	1.0e-57	65.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379100 PE=4 SV=1	[more]
tr\|A0A2I4E1T6\|A0A2I4E1T6_9ROSI	1.6e-31	49.51	uncharacterized protein LOC108985499 OS=Juglans regia OX=51240 GN=LOC108985499 P...	[more]
tr\|A0A2C9W3C5\|A0A2C9W3C5_MANES	2.0e-29	45.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G002700 PE=4 SV=...	[more]
tr\|A0A2P5QPE0\|A0A2P5QPE0_GOSBA	4.4e-29	55.48	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD26653 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03877-RA	Carg03877-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	PANTHER	PTHR33638	FAMILY NOT NAMED	coord: 1..130 coord: 156..203

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03877	Cla022266	Watermelon (97103) v1	carwmB0979
Carg03877	Csa2G379100	Cucumber (Chinese Long) v2	carcuB0990
Carg03877	MELO3C011199	Melon (DHL92) v3.5.1	carmeB0954
Carg03877	ClCG08G012760	Watermelon (Charleston Gray)	carwcgB0959
Carg03877	CSPI02G22850	Wild cucumber (PI 183967)	carcpiB1014
Carg03877	Cucsa.161850	Cucumber (Gy14) v1	carcgyB1093
Carg03877	CmaCh05G006370	Cucurbita maxima (Rimu)	carcmaB1358
Carg03877	CmaCh12G002850	Cucurbita maxima (Rimu)	carcmaB1349
Carg03877	CmoCh12G002370	Cucurbita moschata (Rifu)	carcmoB1310
Carg03877	Lsi08G011370	Bottle gourd (USVL1VR-Ls)	carlsiB899
Carg03877	Cp4.1LG11g05630	Cucurbita pepo (Zucchini)	carcpeB1353
Carg03877	Cp4.1LG07g02020	Cucurbita pepo (Zucchini)	carcpeB1368
Carg03877	CsGy2G022610	Cucumber (Gy14) v2	carcgybB0963
Carg03877	MELO3C011199.2	Melon (DHL92) v3.6.1	carmedB0960
Carg03877	CsaV3_2G031490	Cucumber (Chinese Long) v3	carcucB1018
Carg03877	Cla97C08G156010	Watermelon (97103) v2	carwmbB1035
Carg03877	Bhi04G000857	Wax gourd	carwgoB1144

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03877	Carg08321	Silver-seed gourd	carcarB072

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03877	Silver-seed gourd	carcarB071
Carg03877	Silver-seed gourd	carcarB168
Carg03877	Silver-seed gourd	carcarB513
Carg03877	Silver-seed gourd	carcarB558
Carg03877	Cucumber (Gy14) v2	carcgybB0960
Carg03877	Cucumber (Gy14) v2	carcgybB0965
Carg03877	Cucumber (Gy14) v1	carcgyB1091
Carg03877	Cucumber (Gy14) v1	carcgyB1097
Carg03877	Cucurbita maxima (Rimu)	carcmaB1348
Carg03877	Cucurbita maxima (Rimu)	carcmaB1356
Carg03877	Cucurbita moschata (Rifu)	carcmoB1308
Carg03877	Cucurbita moschata (Rifu)	carcmoB1315
Carg03877	Cucurbita moschata (Rifu)	carcmoB1318
Carg03877	Cucurbita moschata (Rifu)	carcmoB1320
Carg03877	Cucurbita pepo (Zucchini)	carcpeB1351
Carg03877	Cucurbita pepo (Zucchini)	carcpeB1352
Carg03877	Cucurbita pepo (Zucchini)	carcpeB1363
Carg03877	Cucurbita pepo (Zucchini)	carcpeB1366
Carg03877	Wild cucumber (PI 183967)	carcpiB1010
Carg03877	Wild cucumber (PI 183967)	carcpiB1016
Carg03877	Cucumber (Chinese Long) v2	carcuB0987
Carg03877	Cucumber (Chinese Long) v2	carcuB0993
Carg03877	Cucumber (Chinese Long) v3	carcucB1015
Carg03877	Cucumber (Chinese Long) v3	carcucB1022
Carg03877	Bottle gourd (USVL1VR-Ls)	carlsiB897
Carg03877	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg03877	Melon (DHL92) v3.5.1	carmeB0955
Carg03877	Melon (DHL92) v3.5.1	carmeB0958
Carg03877	Melon (DHL92) v3.6.1	carmedB0961
Carg03877	Melon (DHL92) v3.6.1	carmedB0964
Carg03877	Watermelon (Charleston Gray)	carwcgB0958
Carg03877	Watermelon (97103) v1	carwmB0978
Carg03877	Watermelon (97103) v2	carwmbB1034
Carg03877	Wax gourd	carwgoB1145
Carg03877	Wax gourd	carwgoB1153