Carg24533-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTACAAGCAGAACTAGTCAAGCTCCAATTACTTCAAAATCTATGCCAACTTCTAAACCCTACCACACCTTCTCAAGCACTACCCGGCACCCCCCTCGATCGCCTTCAAAACCCTAACTCTAACCCGTCTCGAGCTAGTTTTTCGACCCAAAACCCTAACTCTAGCCAGCTTCAAGCTGGTTTTACGAGCGGGTTCATGTCGGGGTCGGGTTTTGAATACGAGGACAAGAATAAAGCTAAGATGGAAGAAATGGAAAATTTAGATTACGTTCAAGTTGAGAATTATTATCCAATTCTTCCTCCATTGACTTCAGAGAGTGAAACAAATCCATTGGGTTGCTCCACCAATTCAAACTCACCTTCTTCATCTTCTTCAATTTTTGATAGCTTGGAGTCTTTGATGAACGAGGACGAACCAAGTGAATCGTACTGGAATAACCTTCTACGGTAAGTTTCTTATTATCGAGCACATTATACCAAAATAGCTTTCTATATCTTCGAGAATTCTATTGACATAGCGAAGTTAAGATAAGGACAAACGTGTACAGTAGTATAATATTATCCACTTTGAACATAAGTTCTCGTGATTTTACTTTTGACTTCCCAAAATGTCTCGTAACAACAGAGATAATGTCTTTTACTTATATATATCCAAGATCTTCTACGATTAGTTTCTTATAATCCCGAATAATTTACTGTATCTTCGAGGATTCTATTGACATAGTTAAGTTAAGATCAGGACGAACGTCAACAGTGGTATGATATCATCCAATTTGAACATAAGTTTTCTTGACTTTACTTTTGATTTCCCAAAATGTCTCGTATCAACAGAGATAGTGTCTTTTACTTAGCTAACGGGAGTTGTCCCGAACACTAATCCACCCATATGTTTCTTTGTTTTGTTATCTATAACGTTATCGGGATTATTATTTTGATTTAATTTCTTGCTATTTCTTGCAGATCAACAATTTGATTCATAA ATGTTACAAGCAGAACTAGTCAAGCTCCAATTACTTCAAAATCTATGCCAACTTCTAAACCCTACCACACCTTCTCAAGCACTACCCGGCACCCCCCTCGATCGCCTTCAAAACCCTAACTCTAACCCGTCTCGAGCTAGTTTTTCGACCCAAAACCCTAACTCTAGCCAGCTTCAAGCTGGTTTTACGAGCGGGTTCATGTCGGGGTCGGGTTTTGAATACGAGGACAAGAATAAAGCTAAGATGGAAGAAATGGAAAATTTAGATTACGTTCAAGTTGAGAATTATTATCCAATTCTTCCTCCATTGACTTCAGAGAGTGAAACAAATCCATTGGGTTGCTCCACCAATTCAAACTCACCTTCTTCATCTTCTTCAATTTTTGATAGCTTGGAGTCTTTGATGAACGAGGACGAACCAAATCAACAATTTGATTCATAA ATGTTACAAGCAGAACTAGTCAAGCTCCAATTACTTCAAAATCTATGCCAACTTCTAAACCCTACCACACCTTCTCAAGCACTACCCGGCACCCCCCTCGATCGCCTTCAAAACCCTAACTCTAACCCGTCTCGAGCTAGTTTTTCGACCCAAAACCCTAACTCTAGCCAGCTTCAAGCTGGTTTTACGAGCGGGTTCATGTCGGGGTCGGGTTTTGAATACGAGGACAAGAATAAAGCTAAGATGGAAGAAATGGAAAATTTAGATTACGTTCAAGTTGAGAATTATTATCCAATTCTTCCTCCATTGACTTCAGAGAGTGAAACAAATCCATTGGGTTGCTCCACCAATTCAAACTCACCTTCTTCATCTTCTTCAATTTTTGATAGCTTGGAGTCTTTGATGAACGAGGACGAACCAAATCAACAATTTGATTCATAA MLQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDRLQNPNSNPSRASFSTQNPNSSQLQAGFTSGFMSGSGFEYEDKNKAKMEEMENLDYVQVENYYPILPPLTSESETNPLGCSTNSNSPSSSSSIFDSLESLMNEDEPNQQFDS
BLAST of Carg24533-RA vs. NCBI nr
Match: XP_022963556.1 (transcription factor MYB41-like [Cucurbita moschata]) HSP 1 Score: 236.9 bits (603), Expect = 4.4e-59 Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0
BLAST of Carg24533-RA vs. NCBI nr
Match: XP_023511538.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53 Identity = 131/143 (91.61%), Postives = 134/143 (93.71%), Query Frame = 0
BLAST of Carg24533-RA vs. NCBI nr
Match: XP_022967301.1 (transcription factor MYB41-like [Cucurbita maxima]) HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52 Identity = 128/143 (89.51%), Postives = 134/143 (93.71%), Query Frame = 0
BLAST of Carg24533-RA vs. NCBI nr
Match: XP_008465998.1 (PREDICTED: transcription factor MYB39 [Cucumis melo]) HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19 Identity = 85/162 (52.47%), Postives = 96/162 (59.26%), Query Frame = 0
BLAST of Carg24533-RA vs. NCBI nr
Match: KGN60364.1 (hypothetical protein Csa_3G901100 [Cucumis sativus]) HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19 Identity = 86/161 (53.42%), Postives = 97/161 (60.25%), Query Frame = 0
BLAST of Carg24533-RA vs. TrEMBL
Match: tr|A0A1S3CQ73|A0A1S3CQ73_CUCME (transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103503563 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 7.7e-20 Identity = 85/162 (52.47%), Postives = 96/162 (59.26%), Query Frame = 0
BLAST of Carg24533-RA vs. TrEMBL
Match: tr|A0A0A0LH60|A0A0A0LH60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901100 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19 Identity = 86/161 (53.42%), Postives = 97/161 (60.25%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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