Carg24533 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24533
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription factor MYB39
Location	Cucurbita_argyrosperma_scaffold_121 : 413534 .. 414515 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACAAGCAGAACTAGTCAAGCTCCAATTACTTCAAAATCTATGCCAACTTCTAAACCCTACCACACCTTCTCAAGCACTACCCGGCACCCCCCTCGATCGCCTTCAAAACCCTAACTCTAACCCGTCTCGAGCTAGTTTTTCGACCCAAAACCCTAACTCTAGCCAGCTTCAAGCTGGTTTTACGAGCGGGTTCATGTCGGGGTCGGGTTTTGAATACGAGGACAAGAATAAAGCTAAGATGGAAGAAATGGAAAATTTAGATTACGTTCAAGTTGAGAATTATTATCCAATTCTTCCTCCATTGACTTCAGAGAGTGAAACAAATCCATTGGGTTGCTCCACCAATTCAAACTCACCTTCTTCATCTTCTTCAATTTTTGATAGCTTGGAGTCTTTGATGAACGAGGACGAACCAAGTGAATCGTACTGGAATAACCTTCTACGGTAAGTTTCTTATTATCGAGCACATTATACCAAAATAGCTTTCTATATCTTCGAGAATTCTATTGACATAGCGAAGTTAAGATAAGGACAAACGTGTACAGTAGTATAATATTATCCACTTTGAACATAAGTTCTCGTGATTTTACTTTTGACTTCCCAAAATGTCTCGTAACAACAGAGATAATGTCTTTTACTTATATATATCCAAGATCTTCTACGATTAGTTTCTTATAATCCCGAATAATTTACTGTATCTTCGAGGATTCTATTGACATAGTTAAGTTAAGATCAGGACGAACGTCAACAGTGGTATGATATCATCCAATTTGAACATAAGTTTTCTTGACTTTACTTTTGATTTCCCAAAATGTCTCGTATCAACAGAGATAGTGTCTTTTACTTAGCTAACGGGAGTTGTCCCGAACACTAATCCACCCATATGTTTCTTTGTTTTGTTATCTATAACGTTATCGGGATTATTATTTTGATTTAATTTCTTGCTATTTCTTGCAGATCAACAATTTGATTCATAA

mRNA sequence

ATGTTACAAGCAGAACTAGTCAAGCTCCAATTACTTCAAAATCTATGCCAACTTCTAAACCCTACCACACCTTCTCAAGCACTACCCGGCACCCCCCTCGATCGCCTTCAAAACCCTAACTCTAACCCGTCTCGAGCTAGTTTTTCGACCCAAAACCCTAACTCTAGCCAGCTTCAAGCTGGTTTTACGAGCGGGTTCATGTCGGGGTCGGGTTTTGAATACGAGGACAAGAATAAAGCTAAGATGGAAGAAATGGAAAATTTAGATTACGTTCAAGTTGAGAATTATTATCCAATTCTTCCTCCATTGACTTCAGAGAGTGAAACAAATCCATTGGGTTGCTCCACCAATTCAAACTCACCTTCTTCATCTTCTTCAATTTTTGATAGCTTGGAGTCTTTGATGAACGAGGACGAACCAAATCAACAATTTGATTCATAA

Coding sequence (CDS)

ATGTTACAAGCAGAACTAGTCAAGCTCCAATTACTTCAAAATCTATGCCAACTTCTAAACCCTACCACACCTTCTCAAGCACTACCCGGCACCCCCCTCGATCGCCTTCAAAACCCTAACTCTAACCCGTCTCGAGCTAGTTTTTCGACCCAAAACCCTAACTCTAGCCAGCTTCAAGCTGGTTTTACGAGCGGGTTCATGTCGGGGTCGGGTTTTGAATACGAGGACAAGAATAAAGCTAAGATGGAAGAAATGGAAAATTTAGATTACGTTCAAGTTGAGAATTATTATCCAATTCTTCCTCCATTGACTTCAGAGAGTGAAACAAATCCATTGGGTTGCTCCACCAATTCAAACTCACCTTCTTCATCTTCTTCAATTTTTGATAGCTTGGAGTCTTTGATGAACGAGGACGAACCAAATCAACAATTTGATTCATAA

Protein sequence

MLQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDRLQNPNSNPSRASFSTQNPNSSQLQAGFTSGFMSGSGFEYEDKNKAKMEEMENLDYVQVENYYPILPPLTSESETNPLGCSTNSNSPSSSSSIFDSLESLMNEDEPNQQFDS

Homology

[Close]

BLAST of Carg24533 vs. NCBI nr
Match: XP_022963556.1 (transcription factor MYB41-like [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 4.4e-59
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MLQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDRLQNPNSNPSRASFSXXXXXXXXXXX 60
           MLQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDRLQNPNSNPSRASFSXXXXXXXXXXX
Sbjct: 155 MLQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDRLQNPNSNPSRASFSXXXXXXXXXXX 214

Query: 61  XXXXGFMSGSGFEYEDKNKAKMEEMENLDYVQVENYYPILPPLTSESETNPLGCSTNSNS 120
           XXXXGFMSGSGFEYEDKNKAKMEEMENLDYVQVENYYPILPPLTSESETNPLGCSTNSNS
Sbjct: 215 XXXXGFMSGSGFEYEDKNKAKMEEMENLDYVQVENYYPILPPLTSESETNPLGCSTNSNS 274

Query: 121 PSSSSSIFDSLESLMNEDEPNQQF 145
           PSSSSSIFDSLESLMNEDEP++ +
Sbjct: 275 PSSSSSIFDSLESLMNEDEPSESY 298

[Close]

BLAST of Carg24533 vs. NCBI nr
Match: XP_023511538.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 131/143 (91.61%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 2   LQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDRLQNPNSNPSRASFSXXXXXXXXXXXX 61
           LQAELVKLQLLQNLCQLLNPTTPSQALP TPLDRLQNPNSNP      XXXXXXXXXXXX
Sbjct: 156 LQAELVKLQLLQNLCQLLNPTTPSQALPSTPLDRLQNPNSNPXXXXXXXXXXXXXXXXXX 215

Query: 62  XXXGFMSGSGFEYEDKNKAKMEEMENLDYVQVENYYPILPPLTSESETNPLGCSTNSNSP 121
           XXXGFMSGSGFEYEDKNKAKMEEMEN DYVQVENYYPILPPLTSESETNPLGCSTNSNSP
Sbjct: 216 XXXGFMSGSGFEYEDKNKAKMEEMENFDYVQVENYYPILPPLTSESETNPLGCSTNSNSP 275

Query: 122 SSSSSIFDSLESLMNEDEPNQQF 145
           SSSSSIFDSLESLMNEDEP++ +
Sbjct: 276 SSSSSIFDSLESLMNEDEPSESY 298

[Close]

BLAST of Carg24533 vs. NCBI nr
Match: XP_022967301.1 (transcription factor MYB41-like [Cucurbita maxima])

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 128/143 (89.51%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 2   LQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDRLQNPNSNPSRASFSXXXXXXXXXXXX 61
           LQAELVKLQLLQNLCQLLNPTTP QALP TPLDRLQNPNSNPSRASFSXXXXXXXXXXXX
Sbjct: 156 LQAELVKLQLLQNLCQLLNPTTPPQALPSTPLDRLQNPNSNPSRASFSXXXXXXXXXXXX 215

Query: 62  XXXGFMSGSGFEYEDKNKAKMEEMENLDYVQVENYYPILPPLTSESETNPLGCSTNSNSP 121
           X  GF+S SGF+  DKNKAK+EEMEN DYVQVENYYPILPPLTSESETNPLGCSTNSNSP
Sbjct: 216 XTSGFVSLSGFDDGDKNKAKIEEMENFDYVQVENYYPILPPLTSESETNPLGCSTNSNSP 275

Query: 122 SSSSSIFDSLESLMNEDEPNQQF 145
           SSSSSIFDSLESLMNEDEP++ +
Sbjct: 276 SSSSSIFDSLESLMNEDEPSESY 298

[Close]

BLAST of Carg24533 vs. NCBI nr
Match: XP_008465998.1 (PREDICTED: transcription factor MYB39 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 85/162 (52.47%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 2   LQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDR--LQNPNSNPSRASFSXXXXXXXXXX 61
           LQAE+ KLQLLQNLCQLLNPTT   A+P T  +   LQNPN +  +A  S          
Sbjct: 157 LQAEIAKLQLLQNLCQLLNPTT---AIPTTINNNNGLQNPNPSQFQAGCS---------- 216

Query: 62  XXXXXGFMSGSGFEYEDKNKA-KMEEMENLDYV-QVENYYPILPPLTSES---------- 121
                GF   SGFE  DK KA K+EEM + DYV Q ENYY  LPPL  ES          
Sbjct: 217 ---STGFAQVSGFEDGDKIKANKLEEMGSFDYVIQPENYYQ-LPPLILESPDGSTSNVNQ 276

Query: 122 -----ETNPLGCSTNSNSPSSSSSIFDSLESLMNEDEPNQQF 145
                ETNPL  STNSNSP+ SSSIFDSLESLMN+DE +  +
Sbjct: 277 QIESIETNPLCFSTNSNSPTPSSSIFDSLESLMNDDEASGSY 301

[Close]

BLAST of Carg24533 vs. NCBI nr
Match: KGN60364.1 (hypothetical protein Csa_3G901100 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 86/161 (53.42%), Postives = 97/161 (60.25%), Query Frame = 0


Query: 2   LQAELVKLQLLQNLCQLLNPTTPSQALPGT-PLDRLQNPNSNPSRASFSXXXXXXXXXXX 61
           LQAE+ KLQLLQNLCQLLNPTT   A+P T   +  QNPN +  +A  S           
Sbjct: 39  LQAEIAKLQLLQNLCQLLNPTT---AIPTTINSNGFQNPNPSQFQAGSS----------- 98

Query: 62  XXXXGFMSGSGFEYEDK-NKA-KMEEMENLDYV-QVENYYPILPPLTSES---------- 121
               GF S SGFE  DK NKA K+EEM + DYV Q ENYY  LPPL  ES          
Sbjct: 99  ---TGFASVSGFEDGDKINKANKLEEMGSFDYVIQPENYYQ-LPPLILESPDGSTSNVNQ 158

Query: 122 ----ETNPLGCSTNSNSPSSSSSIFDSLESLMNEDEPNQQF 145
               ETNPL  STNSNSP+ SSSIFDSLESLMN+DE +  +
Sbjct: 159 IESIETNPLCFSTNSNSPTPSSSIFDSLESLMNDDEASGSY 181

[Close]

BLAST of Carg24533 vs. TrEMBL
Match: tr|A0A1S3CQ73|A0A1S3CQ73_CUCME (transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103503563 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.7e-20
Identity = 85/162 (52.47%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 2   LQAELVKLQLLQNLCQLLNPTTPSQALPGTPLDR--LQNPNSNPSRASFSXXXXXXXXXX 61
           LQAE+ KLQLLQNLCQLLNPTT   A+P T  +   LQNPN +  +A  S          
Sbjct: 157 LQAEIAKLQLLQNLCQLLNPTT---AIPTTINNNNGLQNPNPSQFQAGCS---------- 216

Query: 62  XXXXXGFMSGSGFEYEDKNKA-KMEEMENLDYV-QVENYYPILPPLTSES---------- 121
                GF   SGFE  DK KA K+EEM + DYV Q ENYY  LPPL  ES          
Sbjct: 217 ---STGFAQVSGFEDGDKIKANKLEEMGSFDYVIQPENYYQ-LPPLILESPDGSTSNVNQ 276

Query: 122 -----ETNPLGCSTNSNSPSSSSSIFDSLESLMNEDEPNQQF 145
                ETNPL  STNSNSP+ SSSIFDSLESLMN+DE +  +
Sbjct: 277 QIESIETNPLCFSTNSNSPTPSSSIFDSLESLMNDDEASGSY 301

[Close]

BLAST of Carg24533 vs. TrEMBL
Match: tr|A0A0A0LH60|A0A0A0LH60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901100 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 86/161 (53.42%), Postives = 97/161 (60.25%), Query Frame = 0


Query: 2   LQAELVKLQLLQNLCQLLNPTTPSQALPGT-PLDRLQNPNSNPSRASFSXXXXXXXXXXX 61
           LQAE+ KLQLLQNLCQLLNPTT   A+P T   +  QNPN +  +A  S           
Sbjct: 39  LQAEIAKLQLLQNLCQLLNPTT---AIPTTINSNGFQNPNPSQFQAGSS----------- 98

Query: 62  XXXXGFMSGSGFEYEDK-NKA-KMEEMENLDYV-QVENYYPILPPLTSES---------- 121
               GF S SGFE  DK NKA K+EEM + DYV Q ENYY  LPPL  ES          
Sbjct: 99  ---TGFASVSGFEDGDKINKANKLEEMGSFDYVIQPENYYQ-LPPLILESPDGSTSNVNQ 158

Query: 122 ----ETNPLGCSTNSNSPSSSSSIFDSLESLMNEDEPNQQF 145
               ETNPL  STNSNSP+ SSSIFDSLESLMN+DE +  +
Sbjct: 159 IESIETNPLCFSTNSNSPTPSSSIFDSLESLMNDDEASGSY 181

The following BLAST results are available for this feature:

BLAST of Carg24533 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963556.1	4.4e-59	97.22	transcription factor MYB41-like [Cucurbita moschata]	[more]
XP_023511538.1	1.2e-53	91.61	transcription factor MYB41-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967301.1	1.8e-52	89.51	transcription factor MYB41-like [Cucurbita maxima]	[more]
XP_008465998.1	1.2e-19	52.47	PREDICTED: transcription factor MYB39 [Cucumis melo]	[more]
KGN60364.1	1.5e-19	53.42	hypothetical protein Csa_3G901100 [Cucumis sativus]	[more]

BLAST of Carg24533 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24533 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24533 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQ73\|A0A1S3CQ73_CUCME	7.7e-20	52.47	transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103503563 PE=4 SV=1	[more]
tr\|A0A0A0LH60\|A0A0A0LH60_CUCSA	1.0e-19	53.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901100 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24533-RA	Carg24533-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24533	Csa3G901100	Cucumber (Chinese Long) v2	carcuB0983
Carg24533	CmoCh19G002380	Cucurbita moschata (Rifu)	carcmoB1301

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24533	Wax gourd	carwgoB1139
Carg24533	Silver-seed gourd	carcarB612
Carg24533	Cucumber (Gy14) v2	carcgybB0956
Carg24533	Cucumber (Gy14) v2	carcgybB0957
Carg24533	Cucumber (Gy14) v1	carcgyB1087
Carg24533	Cucurbita maxima (Rimu)	carcmaB1338
Carg24533	Cucurbita maxima (Rimu)	carcmaB1339
Carg24533	Cucurbita maxima (Rimu)	carcmaB1340
Carg24533	Cucurbita moschata (Rifu)	carcmoB1300
Carg24533	Cucurbita moschata (Rifu)	carcmoB1302
Carg24533	Cucurbita pepo (Zucchini)	carcpeB1343
Carg24533	Cucurbita pepo (Zucchini)	carcpeB1344
Carg24533	Cucurbita pepo (Zucchini)	carcpeB1346
Carg24533	Wild cucumber (PI 183967)	carcpiB1006
Carg24533	Wild cucumber (PI 183967)	carcpiB1007
Carg24533	Cucumber (Chinese Long) v2	carcuB0984
Carg24533	Cucumber (Chinese Long) v3	carcucB1012
Carg24533	Cucumber (Chinese Long) v3	carcucB1011
Carg24533	Bottle gourd (USVL1VR-Ls)	carlsiB887
Carg24533	Melon (DHL92) v3.5.1	carmeB0949
Carg24533	Melon (DHL92) v3.5.1	carmeB0950
Carg24533	Melon (DHL92) v3.6.1	carmedB0955
Carg24533	Melon (DHL92) v3.6.1	carmedB0956
Carg24533	Watermelon (Charleston Gray)	carwcgB0948
Carg24533	Watermelon (Charleston Gray)	carwcgB0949
Carg24533	Watermelon (97103) v1	carwmB0974
Carg24533	Watermelon (97103) v1	carwmB0976
Carg24533	Watermelon (97103) v2	carwmbB1023
Carg24533	Watermelon (97103) v2	carwmbB1025