Carg26672 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26672
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NAD(P)H-hydrate epimerase
Location	Cucurbita_argyrosperma_scaffold_268 : 108959 .. 109183 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAATTGGATTGGAAAGAGAAGAGTGATACACCCAATTGAAGGCCACGAAGGACTGAGAAGCTGTTCGAGGCCTTTAAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCTATGGCTGACCTCAGTTTATGTGATGATTTAGCCAGCTTGATCTTGCAAGAATGCTGCCGAGGTAAATTCGATGCTCGTCTTCTCACTTCTGTTTGA

mRNA sequence

ATGGGGAATTGGATTGGAAAGAGAAGAGTGATACACCCAATTGAAGGCCACGAAGGACTGAGAAGCTGTTCGAGGCCTTTAAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCTATGGCTGACCTCAGTTTATGTGATGATTTAGCCAGCTTGATCTTGCAAGAATGCTGCCGAGGTAAATTCGATGCTCGTCTTCTCACTTCTGTTTGA

Coding sequence (CDS)

ATGGGGAATTGGATTGGAAAGAGAAGAGTGATACACCCAATTGAAGGCCACGAAGGACTGAGAAGCTGTTCGAGGCCTTTAAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCTATGGCTGACCTCAGTTTATGTGATGATTTAGCCAGCTTGATCTTGCAAGAATGCTGCCGAGGTAAATTCGATGCTCGTCTTCTCACTTCTGTTTGA

Protein sequence

MGNWIGKRRVIHPIEGHEGLRSCSRPLRIKVVMTRNQLKELMAMADLSLCDDLASLILQECCRGKFDARLLTSV

Homology

[Close]

BLAST of Carg26672 vs. NCBI nr
Match: XP_024197720.1 (uncharacterized protein LOC112200945 [Rosa chinensis])

HSP 1 Score: 65.5 bits (158), Expect = 8.9e-08
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MGNWIGKRRVIHPIEGHEGLR--SCSRPLRIKVVMTRNQLKELMAMADLS----LCDDLA 60
          MGNW+GK R +HP++  EGL     +  +RIK+ MT+ +LKELMA  D++      ++L 
Sbjct: 1  MGNWVGKERGVHPVDEDEGLHGVGSNSLMRIKLRMTKRELKELMAQVDMTNGGDKSEELG 60

Query: 61 SLILQECCRGKFDARLL 72
           LIL+EC  G+  AR++
Sbjct: 61 GLILKECLEGRLCARVV 77

[Close]

BLAST of Carg26672 vs. NCBI nr
Match: XP_024197915.1 (uncharacterized protein LOC112201104 [Rosa chinensis])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MGNWIGKRRVIHPIEGHEGLR--SCSRPLRIKVVMTRNQLKELMAMADLS----LCDDLA 60
          MGNW+GK R +HP++  EG+R    +  +RIKV MT+ +LKE +A  D++      ++L 
Sbjct: 1  MGNWVGKERSVHPVDEGEGVRGVGSNSLIRIKVQMTKRKLKEFIAQVDMNNGGDNSEELG 60

Query: 61 SLILQECCRGKFDARLL 72
           +IL+EC  G+  AR++
Sbjct: 61 GVILKECLEGRLSARVV 77

[Close]

BLAST of Carg26672 vs. NCBI nr
Match: PNT50278.1 (hypothetical protein POPTR_002G179000v3 [Populus trichocarpa])

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1  MGNWIGKRRV-IHPI--EGHEGLRS-----CSRPLRIKVVMTRNQLKELMAMADLSL-CD 60
          MGNW  ++ + +HP+  +G + ++S      S  LRIKV MT  QL+ELMA+ADLS    
Sbjct: 1  MGNWFSRKYLAVHPMDQDGEDIVKSSLITPSSSSLRIKVRMTTTQLEELMALADLSEGSS 60

Query: 61 DLASLILQECCRGKFDARLL 72
          DL  +ILQEC  G+F AR++
Sbjct: 61 DLGRVILQECLDGRFRARVV 80

[Close]

BLAST of Carg26672 vs. NCBI nr
Match: XP_011468894.1 (PREDICTED: uncharacterized protein LOC105352819 [Fragaria vesca subsp. vesca])

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MGNWIGK-RRVIHPIEGHEGLRSCSRP---LRIKVVMTRNQLKELMAMADLSL-----CD 60
          MGN+ GK   V+HP++ +EG      P   LR+KV MT+ QLKELMA  D +       +
Sbjct: 1  MGNFAGKDYGVVHPVDENEGADRTPSPNSLLRVKVRMTKRQLKELMAQVDKNKLGHRNSE 60

Query: 61 DLASLILQECCRGKFDA 69
          +L S+ILQEC +G+  A
Sbjct: 61 ELGSVILQECLKGRLSA 77

[Close]

BLAST of Carg26672 vs. NCBI nr
Match: PQQ16064.1 (hypothetical protein Pyn_19127 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 1  MGNWIGKRRVIHPIEGHEGLRSCS-----RPLRIKVVMTRNQLKELMAMADLSLC----D 60
          MGNW+G+ + +HP E        S       LRIKV MT  +LKELMA  D++       
Sbjct: 1  MGNWVGRYKGVHPTEDQAIRHGTSSSXXXXSLRIKVRMTAKKLKELMAEVDVTKSPNSNS 60

Query: 61 DLASLILQECCRGKFDARLLTSV 75
          +L  LIL+EC  G+  AR++ +V
Sbjct: 61 ELGRLILRECLEGRSRARVVAAV 83

[Close]

BLAST of Carg26672 vs. TAIR10
Match: AT3G61930.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 4.2e-04
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 1  MGNWIGKRRVIHPIEGHEGL-RSCSRP-------LRIKVVMTRNQLKELMAMADLSLCDD 60
          MGN++ +   +HP  G  G  R    P       +RIKV M R+QL+EL+ +A      D
Sbjct: 1  MGNFLRRSCAVHPASGDGGRGRHVDEPPQQRPSSVRIKVRMRRDQLEELLYLARRGDQSD 60

Query: 61 ----LASLILQECCRGKFDARLLTS 74
              +  LIL+EC  G+  A +L S
Sbjct: 61 DGGKIGFLILKECMEGRLPASVLGS 85

[Close]

BLAST of Carg26672 vs. TrEMBL
Match: tr|B9GRQ7|B9GRQ7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179000v3 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.2e-06
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1  MGNWIGKRRV-IHPI--EGHEGLRS-----CSRPLRIKVVMTRNQLKELMAMADLSL-CD 60
          MGNW  ++ + +HP+  +G + ++S      S  LRIKV MT  QL+ELMA+ADLS    
Sbjct: 1  MGNWFSRKYLAVHPMDQDGEDIVKSSLITPSSSSLRIKVRMTTTQLEELMALADLSEGSS 60

Query: 61 DLASLILQECCRGKFDARLL 72
          DL  +ILQEC  G+F AR++
Sbjct: 61 DLGRVILQECLDGRFRARVV 80

[Close]

BLAST of Carg26672 vs. TrEMBL
Match: tr|M5X856|M5X856_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023797mg PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-04
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1  MGNWIGK-RRVIHPIEGHEGLRSCSRP--LRIKVVMTRNQLKELMAMADL------SLCD 60
          MGNW+G+ + ++ P E H+ +R  + P  L +KV MT  QLKELMA  D+         +
Sbjct: 1  MGNWVGRYKDLVRPSEDHKEIRHRTSPNSLSVKVRMTTTQLKELMAQVDMMNMAKDRNSE 60

Query: 61 DLASLILQECCRGKFDARLLTS 74
          +L  +ILQEC  G+  A ++ +
Sbjct: 61 ELGRVILQECLEGRLTACIVAA 82

[Close]

BLAST of Carg26672 vs. TrEMBL
Match: tr|A0A251QIC3|A0A251QIC3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197100 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-04
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1  MGNWIGK-RRVIHPIEGHEGLRSCSRP--LRIKVVMTRNQLKELMAMADL------SLCD 60
          MGNW+G+ + ++ P E H+ +R  + P  L +KV MT  QLKELMA  D+         +
Sbjct: 1  MGNWVGRYKDLVRPSEDHKEIRHRTSPNSLSVKVRMTTTQLKELMAQVDMMNMAKDRNSE 60

Query: 61 DLASLILQECCRGKFDARLLTS 74
          +L  +ILQEC  G+  A ++ +
Sbjct: 61 ELGRVILQECLEGRLTACIVAA 82

[Close]

BLAST of Carg26672 vs. TrEMBL
Match: tr|B9RNJ7|B9RNJ7_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1339590 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-04
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1  MGNWIGKRRVIHPIEGHEGLRSCSRPLRIKVVMTRNQLKELMAMADLSLCD-DLASLILQ 60
          MGN +G+++V+HP+E      +    LRIKV M+  QLKE M+  DL   D +L  ++LQ
Sbjct: 1  MGNCLGRKQVVHPLEH----STSDYKLRIKVRMSARQLKEFMSRVDLRKGDSELGRVVLQ 60

Query: 61 ECCRGKFDARLL 72
          EC  G+  AR++
Sbjct: 61 ECLDGRLTARVV 68

[Close]

BLAST of Carg26672 vs. TrEMBL
Match: tr|A0A059AZQ6|A0A059AZQ6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01937 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-04
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1  MGNWIGKRRVIHPIEGHEGLRSCSRP-LRIKVVMTRNQLKELMAMADLSLCD-DLASLIL 60
          MGNW+GK+  +HP       R+   P +R+KV MTR QL+ELM+  D S  D +L  LIL
Sbjct: 1  MGNWLGKKAQVHP-------RAQPSPGVRVKVRMTRTQLRELMSRVDPSRRDVELGPLIL 60

Query: 61 QECCRGKFDARLL 72
          +EC  G+  A ++
Sbjct: 61 RECLEGRLPAPVI 66

The following BLAST results are available for this feature:

BLAST of Carg26672 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024197720.1	8.9e-08	42.86	uncharacterized protein LOC112200945 [Rosa chinensis]	[more]
XP_024197915.1	2.6e-07	40.26	uncharacterized protein LOC112201104 [Rosa chinensis]	[more]
PNT50278.1	1.1e-05	46.25	hypothetical protein POPTR_002G179000v3 [Populus trichocarpa]	[more]
XP_011468894.1	3.2e-05	44.16	PREDICTED: uncharacterized protein LOC105352819 [Fragaria vesca subsp. vesca]	[more]
PQQ16064.1	1.6e-04	39.76	hypothetical protein Pyn_19127 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Carg26672 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61930.1	4.2e-04	35.29	unknown protein	[more]

BLAST of Carg26672 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26672 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9GRQ7\|B9GRQ7_POPTR	7.2e-06	46.25	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179000v3 PE=...	[more]
tr\|M5X856\|M5X856_PRUPE	1.4e-04	37.80	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023797m...	[more]
tr\|A0A251QIC3\|A0A251QIC3_PRUPE	1.4e-04	37.80	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197100 PE=4 SV=1	[more]
tr\|B9RNJ7\|B9RNJ7_RICCO	1.4e-04	41.67	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1339590 PE=4 SV=1	[more]
tr\|A0A059AZQ6\|A0A059AZQ6_EUCGR	1.4e-04	43.84	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01937 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26672-RA	Carg26672-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26672	MELO3C022243	Melon (DHL92) v3.5.1	carmeB0887
Carg26672	ClCG06G002840	Watermelon (Charleston Gray)	carwcgB0877
Carg26672	MELO3C022243.2	Melon (DHL92) v3.6.1	carmedB0895
Carg26672	Cla97C06G112210	Watermelon (97103) v2	carwmbB0942
Carg26672	Bhi12G001933	Wax gourd	carwgoB1045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26672	Cucumber (Gy14) v2	carcgybB0888
Carg26672	Cucumber (Gy14) v1	carcgyB1018
Carg26672	Cucurbita maxima (Rimu)	carcmaB1239
Carg26672	Cucurbita moschata (Rifu)	carcmoB1210
Carg26672	Cucurbita pepo (Zucchini)	carcpeB1250
Carg26672	Wild cucumber (PI 183967)	carcpiB0936
Carg26672	Cucumber (Chinese Long) v2	carcuB0915
Carg26672	Cucumber (Chinese Long) v3	carcucB0938
Carg26672	Bottle gourd (USVL1VR-Ls)	carlsiB820
Carg26672	Bottle gourd (USVL1VR-Ls)	carlsiB821
Carg26672	Watermelon (97103) v1	carwmB0902