MELO3C022243.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022243.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	BnaCnng29530D protein
Location	chr11 : 32094476 .. 32094925 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAGAGAGAGATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGGTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCTGACGATCTCACAATAAATCATGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTGTTCTTACTTGTGTTTGAAGGATTTAGGCTTGGAGGAAGATTTGAATTTCTAGCATATCTCTTAGTCTTAGTTGTGGGTATATATGTTTTAATAAGTTGAATGGTTACCGTTATAAGTTATTGTTTTTGTGAAGACTTTAATTATGACTTGTATCAATATGGCTCATGAGCTGAGAGTTAGAGATTATTTAAGATCTTTTTTTTTATACATTCATTATGATTCTTGC

mRNA sequence

GAGAGAGAGAGAGATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGGTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCTGACGATCTCACAATAAATCATGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTGTTCTTACTTGTGTTTGAAGGATTTAGGCTTGGAGGAAGATTTGAATTTCTAGCATATCTCTTAGTCTTAGTTGTGGGTATATATGTTTTAATAAGTTGAATGGTTACCGTTATAAGTTATTGTTTTTGTGAAGACTTTAATTATGACTTGTATCAATATGGCTCATGAGCTGAGAGTTAGAGATTATTTAAGATCTTTTTTTTTATACATTCATTATGATTCTTGC

Coding sequence (CDS)

ATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGGTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCTGACGATCTCACAATAAATCATGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTGTTCTTACTTGTGTTTGA

Protein sequence

MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTINHDLGTLIFQECCQGKLDTRVLTCV

Homology

[Close]

BLAST of MELO3C022243.2 vs. NCBI nr
Match: XP_024197720.1 (uncharacterized protein LOC112200945 [Rosa chinensis])

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLR--SSSRPLRIKVVMTRKQLKKLMAMADDLT---INHDLG 60
          MGN VGK + VHP++  EGL    S+  +RIK+ MT+++LK+LMA  D       + +LG
Sbjct: 1  MGNWVGKERGVHPVDEDEGLHGVGSNSLMRIKLRMTKRELKELMAQVDMTNGGDKSEELG 60

Query: 61 TLIFQECCQGKLDTRVL 73
           LI +EC +G+L  RV+
Sbjct: 61 GLILKECLEGRLCARVV 77

[Close]

BLAST of MELO3C022243.2 vs. NCBI nr
Match: XP_011468894.1 (PREDICTED: uncharacterized protein LOC105352819 [Fragaria vesca subsp. vesca])

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-06
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 1  MGNLVGK-RKLVHPIEGYEGLRSSSRP---LRIKVVMTRKQLKKLMAMADDLTINH---- 60
          MGN  GK   +VHP++  EG   +  P   LR+KV MT++QLK+LMA  D   + H    
Sbjct: 1  MGNFAGKDYGVVHPVDENEGADRTPSPNSLLRVKVRMTKRQLKELMAQVDKNKLGHRNSE 60

Query: 61 DLGTLIFQECCQGKLDTRVL 73
          +LG++I QEC +G+L   V+
Sbjct: 61 ELGSVILQECLKGRLSACVV 80

[Close]

BLAST of MELO3C022243.2 vs. NCBI nr
Match: XP_024197915.1 (uncharacterized protein LOC112201104 [Rosa chinensis])

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-06
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLR--SSSRPLRIKVVMTRKQLKKLMAMAD---DLTINHDLG 60
          MGN VGK + VHP++  EG+R   S+  +RIKV MT+++LK+ +A  D       + +LG
Sbjct: 1  MGNWVGKERSVHPVDEGEGVRGVGSNSLIRIKVQMTKRKLKEFIAQVDMNNGGDNSEELG 60

Query: 61 TLIFQECCQGKLDTRVL 73
           +I +EC +G+L  RV+
Sbjct: 61 GVILKECLEGRLSARVV 77

[Close]

BLAST of MELO3C022243.2 vs. NCBI nr
Match: EEF47052.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-05
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTINHDLGTLIFQ 60
          MGN +G++++VHP+E      +S   LRIKV M+ +QLK+ M+  D    + +LG ++ Q
Sbjct: 1  MGNCLGRKQVVHPLEH----STSDYKLRIKVRMSARQLKEFMSRVDLRKGDSELGRVVLQ 60

Query: 61 ECCQGKLDTRVL 73
          EC  G+L  RV+
Sbjct: 61 ECLDGRLTARVV 68

[Close]

BLAST of MELO3C022243.2 vs. NCBI nr
Match: OAY62085.1 (hypothetical protein MANES_01G240500 [Manihot esculenta])

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPI----EGYEGLRS-----SSRPLRIKVVMTRKQLKKLMAMADDLTIN 60
          MGN + +++ V P+    +  E ++S     SS  LRIKVVMT +QL++L A AD    N
Sbjct: 1  MGNFIWRKRAVQPLNHLQDEEEDVKSSHTDTSSNKLRIKVVMTARQLEELAAKADLSKGN 60

Query: 61 HDLGTLIFQECCQGKLDTRVL 73
           +LG +I Q+C  G+L  RV+
Sbjct: 61 SELGRMILQQCLDGRLRGRVV 81

[Close]

BLAST of MELO3C022243.2 vs. TrEMBL
Match: tr|B9RNJ7|B9RNJ7_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1339590 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-05
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTINHDLGTLIFQ 60
          MGN +G++++VHP+E      +S   LRIKV M+ +QLK+ M+  D    + +LG ++ Q
Sbjct: 1  MGNCLGRKQVVHPLEH----STSDYKLRIKVRMSARQLKEFMSRVDLRKGDSELGRVVLQ 60

Query: 61 ECCQGKLDTRVL 73
          EC  G+L  RV+
Sbjct: 61 ECLDGRLTARVV 68

[Close]

BLAST of MELO3C022243.2 vs. TrEMBL
Match: tr|A0A2C9WPY2|A0A2C9WPY2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G240500 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.0e-05
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPI----EGYEGLRS-----SSRPLRIKVVMTRKQLKKLMAMADDLTIN 60
          MGN + +++ V P+    +  E ++S     SS  LRIKVVMT +QL++L A AD    N
Sbjct: 1  MGNFIWRKRAVQPLNHLQDEEEDVKSSHTDTSSNKLRIKVVMTARQLEELAAKADLSKGN 60

Query: 61 HDLGTLIFQECCQGKLDTRVL 73
           +LG +I Q+C  G+L  RV+
Sbjct: 61 SELGRMILQQCLDGRLRGRVV 81

[Close]

BLAST of MELO3C022243.2 vs. TrEMBL
Match: tr|M5X891|M5X891_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-04
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLRSS----SRPLRIKVVMTRKQLKKLMAMADDLTI---NHD 60
          MGN VG+ K VHP E     R+S        RIKV MT KQ K+LMA  D   I   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSXXXXXXXXRIKVRMTAKQFKELMAEVDATKIPNSNSE 60

Query: 61 LGTLIFQECCQGKLDTRVL 73
          LG LI +EC +G+   RV+
Sbjct: 61 LGRLILRECLEGRSCARVV 79

[Close]

BLAST of MELO3C022243.2 vs. TrEMBL
Match: tr|A0A059AZQ6|A0A059AZQ6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01937 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.2e-04
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLRSSSRP-LRIKVVMTRKQLKKLMAMADDLTINHDLGTLIF 60
          MGN +GK+  VHP       R+   P +R+KV MTR QL++LM+  D    + +LG LI 
Sbjct: 1  MGNWLGKKAQVHP-------RAQPSPGVRVKVRMTRTQLRELMSRVDPSRRDVELGPLIL 60

Query: 61 QECCQGKLDTRVL 73
          +EC +G+L   V+
Sbjct: 61 RECLEGRLPAPVI 66

[Close]

BLAST of MELO3C022243.2 vs. TrEMBL
Match: tr|B9GRQ7|B9GRQ7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179000v3 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.2e-04
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 1  MGNLVGKRKL-VHPI--EGYEGLRS-----SSRPLRIKVVMTRKQLKKLMAMADDLTINH 60
          MGN   ++ L VHP+  +G + ++S     SS  LRIKV MT  QL++LMA+AD    + 
Sbjct: 1  MGNWFSRKYLAVHPMDQDGEDIVKSSLITPSSSSLRIKVRMTTTQLEELMALADLSEGSS 60

Query: 61 DLGTLIFQECCQGKLDTRVL 73
          DLG +I QEC  G+   RV+
Sbjct: 61 DLGRVILQECLDGRFRARVV 80

The following BLAST results are available for this feature:

BLAST of MELO3C022243.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024197720.1	3.8e-06	44.16	uncharacterized protein LOC112200945 [Rosa chinensis]	[more]
XP_011468894.1	8.4e-06	42.50	PREDICTED: uncharacterized protein LOC105352819 [Fragaria vesca subsp. vesca]	[more]
XP_024197915.1	8.4e-06	41.56	uncharacterized protein LOC112201104 [Rosa chinensis]	[more]
EEF47052.1	4.2e-05	40.28	conserved hypothetical protein [Ricinus communis]	[more]
OAY62085.1	1.2e-04	40.74	hypothetical protein MANES_01G240500 [Manihot esculenta]	[more]

BLAST of MELO3C022243.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C022243.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C022243.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9RNJ7\|B9RNJ7_RICCO	2.8e-05	40.28	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1339590 PE=4 SV=1	[more]
tr\|A0A2C9WPY2\|A0A2C9WPY2_MANES	8.0e-05	40.74	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G240500 PE=4 SV=...	[more]
tr\|M5X891\|M5X891_PRUPE	1.0e-04	45.57	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1	[more]
tr\|A0A059AZQ6\|A0A059AZQ6_EUCGR	5.2e-04	41.10	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01937 PE=4 SV...	[more]
tr\|B9GRQ7\|B9GRQ7_POPTR	5.2e-04	43.75	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179000v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022243.2.1	MELO3C022243.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C022243.2	ClCG06G002840	Watermelon (Charleston Gray)	medwcgB119
MELO3C022243.2	Cla97C06G112210	Watermelon (97103) v2	medwmbB118
MELO3C022243.2	Bhi12G001933	Wax gourd	medwgoB094
MELO3C022243.2	Carg26672	Silver-seed gourd	carmedB0895

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022243.2	Cucumber (Gy14) v2	cgybmedB385
MELO3C022243.2	Cucumber (Gy14) v1	cgymedB174
MELO3C022243.2	Cucurbita maxima (Rimu)	cmamedB365
MELO3C022243.2	Cucurbita maxima (Rimu)	cmamedB919
MELO3C022243.2	Cucurbita moschata (Rifu)	cmomedB351
MELO3C022243.2	Cucurbita moschata (Rifu)	cmomedB908
MELO3C022243.2	Cucurbita pepo (Zucchini)	cpemedB138
MELO3C022243.2	Cucurbita pepo (Zucchini)	cpemedB333
MELO3C022243.2	Wild cucumber (PI 183967)	cpimedB435
MELO3C022243.2	Cucumber (Chinese Long) v2	cumedB425
MELO3C022243.2	Bottle gourd (USVL1VR-Ls)	lsimedB019
MELO3C022243.2	Bottle gourd (USVL1VR-Ls)	lsimedB020
MELO3C022243.2	Watermelon (97103) v1	medwmB134
MELO3C022243.2	Silver-seed gourd	carmedB0081
MELO3C022243.2	Silver-seed gourd	carmedB0609
MELO3C022243.2	Cucumber (Chinese Long) v3	cucmedB438