Carg23287-RA (mRNA) Silver-seed gourd

Overview
NameCarg23287-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDormancy/auxin associated protein
LocationCucurbita_argyrosperma_scaffold_231 : 198417 .. 201220 (+)
Sequence length1193
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTCCCCACTGCCGCTTCTAAGCTCTTCAATATCGAGAACCGCCGCTTTCTCCGCTTCCTCCGCCGTGACGGAACTTTAGCCGTTTCTTCTCTTCTTCTTCGATTTCCTGTTCATTATGGGCTTACTTGACCAGCTTTGGGACGATACCGTCGCTGGACCCCGGCCAGATAGTGGCCTTGGCAAGCTTCGTAAACACTCCACGTTTACCGGGCGAAATAGCTCCGGCAGCAAGGGTACGCTATGGATATTTTTATTCCACTGCTTGCCATAGCGAACACGTCGTCGAACTCGATAAACTTCAACTTGAAACCCTAATTTTAAGCTCAATAACGGAATATTGAGTATTCGATTGATTTTTCTAGGTTAAAAGTGGTTTAAACTGTAGGCTGATGATCGAATTGAGATTCTATTTTTTTTTTTAAATTTCTTAATAAAAACCTACCGTTGATTTTGCTTGAGAAATAGCCAGCAGCTCGGATTTGTCTCGCAATTTGACAGGATCTGTACCTTTGAACTGAAAAAGATGCTCAATCGATACCTTGAACTTCATAAAATCATAGTTTCTGTGTTGACTATTCTTTTTTCTTGATTTTTTATTGAACTCTTTTTGGATCAGAGCTCGATGGCGGCAGCGCGAGATCGTACGGCGAAGAATCTTCACAATCGTCGGTGAGGATCACGAGGAGTATCATGATACTAAGGCCGCCAGGGTACCAGTCTGGTTCGCCGCCTATTTCACCGGCTGGATCTAGTTCTCCGGCATCGCCTTTTTCTGGTAAGTAACAGAGACGTCTTTTTTGCACTTTCCTCTTTATGCGAAATTACCAATATGCCCTTCATGTAGAAGCCAAATGCACTTTTATCTTTCAATACAAGTTGGAATAAAATTACACGAGGGGGGGTTTTTTGTCCTTTGGTTATGGCGTCGCCTTCATGATTGGACAGGCACAGAAAACGGTAGTTGTATTTGGTGAAAAGATATGGTTCTAATTAAACCTGGATTGAAGAGCATCCTTCCATTGAAAGTGCTTCTGTTCGTTTAAATTCGATTGCCATTGAATATTTAATCCATTGACCCACCGTATTTATGGGGTTTCATTAGCAGTTTTCAGTTCAATCGTTTTCAAATTCATTGCATACTTCTCTTCTTGTGGACATAGTTATAGACTATTCTCCTGTTTTGTGGAGGTTGTTTGCCTTGCTCGTTGGTTGGCAGATCTTTGTCAAACAAGTAGAAGTATTTCGTGTGGTTCTGCTGATTTCTCATAAAAAGTTAAATGAAATAGGTGGGAATTGTGGTTTGGTTTGAAAACGTCGAGCTTACTTCATAAACATTCATGGTGGTCAAAGAAAAAATCTGGATCTTGTGAAATCATCATTGCAAACTTAATGTTCATTGTTTCTCTGTTTCAAAACCCTTGCTGCTTAAGTTTTTGCTCTGATGGGTTGAGTTGAACGTTACTAAAATCATTTAGAAATACCAATTTGAGTATAGCTTAACTACTTAATCTTGAGGATTGTTGGGAGAGGAGTCCCATATTGGCTAATTAAGGGGTTGATTGTGGATTTATAAGTAAGGAACTTTGTCTTCATTGGTATGATGCCTTTTGAGAAAACCAAAAGTAAAATCACGAGAGCTTATGCTCAAAGTGGACAATATCATGCCATTGCGAAGCCTCGTATGTATCATTGTTGAACTAAAGAAGGATTGTTTAGAAATCGATTAGCAATAGAAAACTCTCACTAGAACGTTGTTTTGCTGTTGGGTTTGATGTTTCAAAGCTTGTTTTTAGTGGTCTTTTCCTGGATCGTTCGTCTTTCATATCGAAAATTGATTTAATCCGTTCTTGTTTCCTATGTCTCTGATTTCCATACCTCATAAATTGTATCATGAAACTGTAAATTCATTAGTAATCGATGCATATACTAATTCTTGATTTCCCATCTCTTAGTATCATCTTTCAACTTTGTGTTTATTTATAAGTAATTTCTCCCTTTTGGAGGTAGGGAGTCCTTCCGGTTTCGAAGAAGGTCGATCTCCGACACATACACAAAGGCAACCGATAGTGGACCCGGGAGCCCTTCTTCTCCTCACAACATGTGAGATCTAATAAGCTGAGCTCTCTTATTCCCTTTCAACAATGTTCTCCAAAACCTTCATATATTCGTGTAATCTTAGTGTATCGTAACGTGGCTGTAGTAGTATGCATGTGAATTCCGTATGAAGGGTATTAGAATAAGTCTTGTAGGAGGAAGAAGAAGCTAAAATCGAGGGAGATTATGGTAATTTCGAGTACGTAGACGAGGGTACTATTGTAAATTAGGTATCAATGTTGTTGGTTTTGTTAGTGGAATGTAAAAGGGAAGTTGTTCTTTTCATGTGGACCTTATCACTGATTGATTGATTCTCTTTGGTTTTCCATTGGACAGTGCTTTGGTTAATGCAAGACAGCCCTGTTTTCTTTGAATGGTTGCTACAAAGCACCAAATCAATGGCCTTGGACAGATGCTCTTTTCAGGTTTTAATGCCATTCCTTCAAGTGTTTTGCTTTTGGATTCTGTTAGGCCTTGGATTTAATTAAGTAAAAGTTGGGTGGTGGGCTAGTTCTTTATTAGTGAATGTTCGTGTCACCTCCGACCTTCCATGAACGTTTTAGAACGATACTTAAAGTAGAAATGCATTAGAGTATTAGAAGAAAAATTGACATAATAATGGCCAGAAAGTCTGAACGAATGATATTTAGTGTAATAGTCTAAGTCCACCGCTAGCGGATATTGTTCACTTTAGGTTTTTTCTTATA

mRNA sequence

ATCTTCCCCACTGCCGCTTCTAAGCTCTTCAATATCGAGAACCGCCGCTTTCTCCGCTTCCTCCGCCGTGACGGAACTTTAGCCGTTTCTTCTCTTCTTCTTCGATTTCCTGTTCATTATGGGCTTACTTGACCAGCTTTGGGACGATACCGTCGCTGGACCCCGGCCAGATAGTGGCCTTGGCAAGCTTCGTAAACACTCCACGTTTACCGGGCGAAATAGCTCCGGCAGCAAGGAGCTCGATGGCGGCAGCGCGAGATCGTACGGCGAAGAATCTTCACAATCGTCGGTGAGGATCACGAGGAGTATCATGATACTAAGGCCGCCAGGGTACCAGTCTGGTTCGCCGCCTATTTCACCGGCTGGATCTAGTTCTCCGGCATCGCCTTTTTCTGGTAGGGAGTCCTTCCGGTTTCGAAGAAGGTCGATCTCCGACACATACACAAAGGCAACCGATAGTGGACCCGGGAGCCCTTCTTCTCCTCACAACATGTGAGATCTAATAAGCTGAGCTCTCTTATTCCCTTTCAACAATGTTCTCCAAAACCTTCATATATTCGTGTAATCTTAGTGTATCGTAACGTGGCTGTAGTAGTATGCATGTGAATTCCGTATGAAGGGTATTAGAATAAGTCTTGTAGGAGGAAGAAGAAGCTAAAATCGAGGGAGATTATGGTAATTTCGAGTACGTAGACGAGGGTACTATTGTAAATTAGGTATCAATGTTGTTGGTTTTGTTAGTGGAATGTAAAAGGGAAGTTGTTCTTTTCATGTGGACCTTATCACTGATTGATTGATTCTCTTTGGTTTTCCATTGGACAGTGCTTTGGTTAATGCAAGACAGCCCTGTTTTCTTTGAATGGTTGCTACAAAGCACCAAATCAATGGCCTTGGACAGATGCTCTTTTCAGGTTTTAATGCCATTCCTTCAAGTGTTTTGCTTTTGGATTCTGTTAGGCCTTGGATTTAATTAAGTAAAAGTTGGGTGGTGGGCTAGTTCTTTATTAGTGAATGTTCGTGTCACCTCCGACCTTCCATGAACGTTTTAGAACGATACTTAAAGTAGAAATGCATTAGAGTATTAGAAGAAAAATTGACATAATAATGGCCAGAAAGTCTGAACGAATGATATTTAGTGTAATAGTCTAAGTCCACCGCTAGCGGATATTGTTCACTTTAGGTTTTTTCTTATA

Coding sequence (CDS)

ATGGGCTTACTTGACCAGCTTTGGGACGATACCGTCGCTGGACCCCGGCCAGATAGTGGCCTTGGCAAGCTTCGTAAACACTCCACGTTTACCGGGCGAAATAGCTCCGGCAGCAAGGAGCTCGATGGCGGCAGCGCGAGATCGTACGGCGAAGAATCTTCACAATCGTCGGTGAGGATCACGAGGAGTATCATGATACTAAGGCCGCCAGGGTACCAGTCTGGTTCGCCGCCTATTTCACCGGCTGGATCTAGTTCTCCGGCATCGCCTTTTTCTGGTAGGGAGTCCTTCCGGTTTCGAAGAAGGTCGATCTCCGACACATACACAAAGGCAACCGATAGTGGACCCGGGAGCCCTTCTTCTCCTCACAACATGTGA

Protein sequence

MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRITRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPSSPHNM
Homology
[Close]
BLAST of Carg23287-RA vs. NCBI nr
Match: XP_022937952.1 (dormancy-associated protein homolog 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI
Sbjct: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS
Sbjct: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]
BLAST of Carg23287-RA vs. NCBI nr
Match: XP_023537709.1 (dormancy-associated protein homolog 3 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.8 bits (621), Expect = 3.1e-61
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPDSGLGKLRKHSTF+GRNSSGSKELDGGSARSYGEESSQSSVRI
Sbjct: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFSGRNSSGSKELDGGSARSYGEESSQSSVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS
Sbjct: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]
BLAST of Carg23287-RA vs. NCBI nr
Match: XP_022966007.1 (dormancy-associated protein homolog 3 isoform X2 [Cucurbita maxima])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPDSGLGKLRKHSTF+GRNSSGSKELDGGSARSYGEESSQSSVRI
Sbjct: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFSGRNSSGSKELDGGSARSYGEESSQSSVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMILRPPGYQ GSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS
Sbjct: 61  TRSIMILRPPGYQCGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]
BLAST of Carg23287-RA vs. NCBI nr
Match: XP_008454082.1 (PREDICTED: dormancy-associated protein homolog 3 isoform X2 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 1.8e-53
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLL+QLWDDTVAGPRP+SGLGKLRKHST +GR SSGSKELDGGSARSYGE+SS+S VRI
Sbjct: 1   MGLLEQLWDDTVAGPRPESGLGKLRKHSTSSGRPSSGSKELDGGSARSYGEDSSESPVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI+RPPGYQ+GSPPISPAGSSSPASPFSGRESFRFRRRSIS+ YTK TD G GSPS
Sbjct: 61  TRSIMIVRPPGYQNGSPPISPAGSSSPASPFSGRESFRFRRRSISELYTKTTDGGSGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]
BLAST of Carg23287-RA vs. NCBI nr
Match: XP_011648844.1 (PREDICTED: uncharacterized protein LOC101210613 isoform X2 [Cucumis sativus] >KGN60960.1 hypothetical protein Csa_2G031190 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 9.0e-53
Identity = 107/125 (85.60%), Postives = 118/125 (94.40%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDT+AGPRP+SGLGKLRKHSTF+GR +SG+KELDGG ARSYGE+SS+S VRI
Sbjct: 1   MGLLDQLWDDTLAGPRPESGLGKLRKHSTFSGRPTSGNKELDGGRARSYGEDSSESPVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI+RPPGYQ+GSPPISPAGSSSPASPFSGRESFRFRRRSIS+ YTK T+ G GSPS
Sbjct: 61  TRSIMIVRPPGYQNGSPPISPAGSSSPASPFSGRESFRFRRRSISEVYTKTTNGGSGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]
BLAST of Carg23287-RA vs. TAIR10
Match: AT1G56220.3 (Dormancy/auxin associated family protein)

HSP 1 Score: 140.2 bits (352), Expect = 8.7e-34
Identity = 78/140 (55.71%), Postives = 98/140 (70.00%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEES-SQSSVR 60
           MGLLD LWDDTVAGPRP++GLGKLRKH TF+ R SSG+ + + GSARSYGE+S  + +V+
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 61  ITRSIMILRPPGYQSGSPPISPAGSSSPASPF-----------SGRESFRFRRRSISDTY 120
           +TRSIMI++PPGYQ  S P SPAGS+ P SP             G+E FRFRRRS SD +
Sbjct: 61  VTRSIMIIKPPGYQGSSAPASPAGSTPPLSPXXXXXXXXXANAGGKEPFRFRRRSTSDAF 120

Query: 121 TKA---TDSGPGSPSSPHNM 126
            KA   +++GP S    + M
Sbjct: 121 EKAAGGSETGPRSSPPTYGM 140

[Close]
BLAST of Carg23287-RA vs. TAIR10
Match: AT1G54070.1 (Dormancy/auxin associated family protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-08
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 0 

Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
          MG L +LWD+TVAGP PD+GLGKLRKH + +   SS                 S SS ++
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSS---------------PPSLSSDQV 60

Query: 61 TRSIMILRPPGYQSG------SPPISPAGSSSPASPFS 93
          TRSIM+ +      G       P      SS+P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]
BLAST of Carg23287-RA vs. TAIR10
Match: AT1G28330.5 (dormancy-associated protein-like 1)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKHST 30
          M LL++LWDD VAGP+PD GLG+LRK +T
Sbjct: 1  MVLLEKLWDDVVAGPQPDRGLGRLRKITT 29

[Close]
BLAST of Carg23287-RA vs. TAIR10
Match: AT5G44300.1 (Dormancy/auxin associated family protein)

HSP 1 Score: 41.6 bits (96), Expect = 4.2e-04
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 1  MGLLDQLWDDTVAGPRPDS-GLGKLRKHST 30
          MG+L+ LWDD VAGPRP++ G G LR+ ST
Sbjct: 1  MGVLENLWDDVVAGPRPEAGGRGHLRRIST 30

[Close]
BLAST of Carg23287-RA vs. Swiss-Prot
Match: sp|Q8LD26|DRMH3_ARATH (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-30
Identity = 75/137 (54.74%), Postives = 94/137 (68.61%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEES-SQSSVR 60
           MGLLD LWDDTVAGPRP++GLGKLRKH TF+ R SSG+ + + GSARSYGE+S  + +V+
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 61  ITRSIMILRPPGYQSGSPPISPAGSSSPASPF--------SGRESFRFRRRSISDTYTKA 120
           +TRSIMI++PPGYQ  S P SPAGS+ P SPF               FRRRS SD + KA
Sbjct: 61  VTRSIMIIKPPGYQGSSAPASPAGSTPPLSPFXXXXXXXXXXXXXXXFRRRSTSDAFEKA 120

Query: 121 ---TDSGPGSPSSPHNM 126
              +++GP S    + M
Sbjct: 121 AGGSETGPRSSPPTYGM 137

[Close]
BLAST of Carg23287-RA vs. Swiss-Prot
Match: sp|F4HV65|DRMH4_ARATH (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.6e-07
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 0 

Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
          MG L +LWD+TVAGP PD+GLGKLRKH + +   SS                 S SS ++
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSS---------------PPSLSSDQV 60

Query: 61 TRSIMILRPPGYQSG------SPPISPAGSSSPASPFS 93
          TRSIM+ +      G       P      SS+P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]
BLAST of Carg23287-RA vs. Swiss-Prot
Match: sp|B9DGG8|DRM1_ARATH (Dormancy-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKHST 30
          M LL++LWDD VAGP+PD GLG+LRK +T
Sbjct: 1  MVLLEKLWDDVVAGPQPDRGLGRLRKITT 29

[Close]
BLAST of Carg23287-RA vs. Swiss-Prot
Match: sp|Q05349|12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa OX=3747 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.9e-04
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRK 27
          M LLD+LWDD VAGP+P+ GLG LRK
Sbjct: 1  MVLLDKLWDDIVAGPQPERGLGMLRK 26

[Close]
BLAST of Carg23287-RA vs. TrEMBL
Match: tr|A0A1S3BYJ7|A0A1S3BYJ7_CUCME (dormancy-associated protein homolog 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494595 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLL+QLWDDTVAGPRP+SGLGKLRKHST +GR SSGSKELDGGSARSYGE+SS+S VRI
Sbjct: 1   MGLLEQLWDDTVAGPRPESGLGKLRKHSTSSGRPSSGSKELDGGSARSYGEDSSESPVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI+RPPGYQ+GSPPISPAGSSSPASPFSGRESFRFRRRSIS+ YTK TD G GSPS
Sbjct: 61  TRSIMIVRPPGYQNGSPPISPAGSSSPASPFSGRESFRFRRRSISELYTKTTDGGSGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]
BLAST of Carg23287-RA vs. TrEMBL
Match: tr|A0A0A0LFX2|A0A0A0LFX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031190 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.9e-53
Identity = 107/125 (85.60%), Postives = 118/125 (94.40%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDT+AGPRP+SGLGKLRKHSTF+GR +SG+KELDGG ARSYGE+SS+S VRI
Sbjct: 1   MGLLDQLWDDTLAGPRPESGLGKLRKHSTFSGRPTSGNKELDGGRARSYGEDSSESPVRI 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFSGRESFRFRRRSISDTYTKATDSGPGSPS 120
           TRSIMI+RPPGYQ+GSPPISPAGSSSPASPFSGRESFRFRRRSIS+ YTK T+ G GSPS
Sbjct: 61  TRSIMIVRPPGYQNGSPPISPAGSSSPASPFSGRESFRFRRRSISEVYTKTTNGGSGSPS 120

Query: 121 SPHNM 126
           SPHNM
Sbjct: 121 SPHNM 125

[Close]
BLAST of Carg23287-RA vs. TrEMBL
Match: tr|A0A1R3K842|A0A1R3K842_9ROSI (Dormancyauxin associated OS=Corchorus olitorius OX=93759 GN=COLO4_10536 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.5e-43
Identity = 91/126 (72.22%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPD+GLGKLRKHSTFT R +S +KE DGGS RSYG+E+S+ + R+
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPNSSAKESDGGSVRSYGDETSEEATRV 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFS-GRESFRFRRRSISDTYTKATDSGPGSP 120
           TRSIMI++PPGYQSGSPP+SPAGS+ P SPFS GRE+FRFRRRS SD Y KA++ GP SP
Sbjct: 61  TRSIMIVKPPGYQSGSPPVSPAGSTPPVSPFSGGRETFRFRRRSTSDVYEKASEVGPRSP 120

Query: 121 SSPHNM 126
             P+++
Sbjct: 121 RPPYDV 126

[Close]
BLAST of Carg23287-RA vs. TrEMBL
Match: tr|A0A1R3JTA2|A0A1R3JTA2_COCAP (Dormancyauxin associated OS=Corchorus capsularis OX=210143 GN=CCACVL1_04332 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.6e-43
Identity = 90/126 (71.43%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPD+GLGKLRKHSTFT R +S +KE DGG+ RSYG+E+S+ + R+
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPNSSAKESDGGTVRSYGDETSEEATRV 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFS-GRESFRFRRRSISDTYTKATDSGPGSP 120
           TRSIMI++PPGYQSGSPP+SPAGS+ P SPFS GRE+FRFRRRS SD Y KA++ GP SP
Sbjct: 61  TRSIMIVKPPGYQSGSPPVSPAGSTPPVSPFSGGRETFRFRRRSTSDAYEKASEVGPRSP 120

Query: 121 SSPHNM 126
             P+++
Sbjct: 121 RPPYDV 126

[Close]
BLAST of Carg23287-RA vs. TrEMBL
Match: tr|A0A061F398|A0A061F398_THECC (Drm3-like protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.1e-42
Identity = 92/126 (73.02%), Postives = 108/126 (85.71%), Query Frame = 0 

Query: 1   MGLLDQLWDDTVAGPRPDSGLGKLRKHSTFTGRNSSGSKELDGGSARSYGEESSQSSVRI 60
           MGLLDQLWDDTVAGPRPD+GLGKLRKHSTFT R SS +KE DGGS RSYG+E+S+   R+
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSS-AKESDGGSVRSYGDETSEEPTRV 60

Query: 61  TRSIMILRPPGYQSGSPPISPAGSSSPASPFS-GRESFRFRRRSISDTYTKATDSGPGSP 120
           TRSIMI++PPGYQ+GSPPISPAGS+ P SPFS GRESFRFRR+S SD Y KA++ GP SP
Sbjct: 61  TRSIMIVKPPGYQNGSPPISPAGSTPPVSPFSGGRESFRFRRKSTSDAYEKASEVGPRSP 120

Query: 121 SSPHNM 126
             P+++
Sbjct: 121 HPPYDV 125

The following BLAST results are available for this feature:
BLAST of Carg23287-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937952.11.1e-61100.00dormancy-associated protein homolog 3 isoform X2 [Cucurbita moschata][more]
XP_023537709.13.1e-6199.20dormancy-associated protein homolog 3 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022966007.11.2e-6098.40dormancy-associated protein homolog 3 isoform X2 [Cucurbita maxima][more]
XP_008454082.11.8e-5388.00PREDICTED: dormancy-associated protein homolog 3 isoform X2 [Cucumis melo][more]
XP_011648844.19.0e-5385.60PREDICTED: uncharacterized protein LOC101210613 isoform X2 [Cucumis sativus] >KG... [more]
BLAST of Carg23287-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT1G56220.38.7e-3455.71Dormancy/auxin associated family protein[more]
AT1G54070.14.8e-0837.76Dormancy/auxin associated family protein[more]
AT1G28330.51.0e-0568.97dormancy-associated protein-like 1[more]
AT5G44300.14.2e-0463.33Dormancy/auxin associated family protein[more]
BLAST of Carg23287-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LD26|DRMH3_ARATH3.3e-3054.74Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g562... [more]
sp|F4HV65|DRMH4_ARATH8.6e-0737.76Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g540... [more]
sp|B9DGG8|DRM1_ARATH1.8e-0468.97Dormancy-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=1 SV=1[more]
sp|Q05349|12KD_FRAAN8.9e-0473.08Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa OX=3747 PE=2 SV=1[more]
BLAST of Carg23287-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BYJ7|A0A1S3BYJ7_CUCME1.2e-5388.00dormancy-associated protein homolog 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A0A0LFX2|A0A0A0LFX2_CUCSA5.9e-5385.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031190 PE=4 SV=1[more]
tr|A0A1R3K842|A0A1R3K842_9ROSI2.5e-4372.22Dormancyauxin associated OS=Corchorus olitorius OX=93759 GN=COLO4_10536 PE=4 SV=... [more]
tr|A0A1R3JTA2|A0A1R3JTA2_COCAP5.6e-4371.43Dormancyauxin associated OS=Corchorus capsularis OX=210143 GN=CCACVL1_04332 PE=4... [more]
tr|A0A061F398|A0A061F398_THECC6.1e-4273.02Drm3-like protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026669 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008406DRM/ARP
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg23287Carg23287gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg23287-RACarg23287-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23287-RA.exon.1Carg23287-RA.exon.1exon
Carg23287-RA.exon.2Carg23287-RA.exon.2exon
Carg23287-RA.exon.3Carg23287-RA.exon.3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23287-RA.five_prime_UTR.1Carg23287-RA.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23287-RA.CDS.1Carg23287-RA.CDS.1CDS
Carg23287-RA.CDS.2Carg23287-RA.CDS.2CDS
Carg23287-RA.CDS.3Carg23287-RA.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23287-RA.three_prime_UTR.1Carg23287-RA.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008406Dormancy/auxin associated proteinPFAMPF05564Auxin_repressedcoord: 7..90
e-value: 4.6E-10
score: 40.1
IPR008406Dormancy/auxin associated proteinPANTHERPTHR33565FAMILY NOT NAMEDcoord: 1..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..92
NoneNo IPR availablePANTHERPTHR33565:SF1DORMANCY-ASSOCIATED PROTEIN HOMOLOG 3coord: 1..125