Carg22176-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTTGCAAAAATCTTCTTTCGTCCAAATTAGTCTCTCCTCAATTTCGTTACGGTAAAGTAAATATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGTGAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTGTGAATTGCAATCGTTAATTTTACTTCCGAGTTCAATTTTCTCAGTTCTCAGTGTTCTGATTGTGGACTTTTGTTTTTTCGTTTAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATTGTCCCGAGGCATATTCAACTTGCAGTGAGAAACGATGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGCACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAGGTTGCATTAGAAATATCAGTCGATTAACAGAAAACGAAACAGTTAGGTTCTGTAAGATTGTTATTAGCTTCAATGAATCTTTCTTCATCAGGTTCGTAAATCTACGAAACGATTTTTGGTTAGAAAGGTATCCGTCTTCGTCGCCGATAAATTTCTATAGTATGTGTAAATGCTGATGAAGTTCACCACTAATTTGAATACAAAGGAACCAGTTAAATTTTTATTGTCTCGCATTCTGTAAGTTCTGTTATCAGCTAAACAAGAACTGCAAAATCATTATTGACAGGATTATTTT TCTTGCAAAAATCTTCTTTCGTCCAAATTAGTCTCTCCTCAATTTCGTTACGGTAAAGTAAATATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGTGAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATTGTCCCGAGGCATATTCAACTTGCAGTGAGAAACGATGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGCACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAGGTTGCATTAGAAATATCAGTCGATTAACAGAAAACGAAACAGTTAGGTTCTGTAAGATTGTTATTAGCTTCAATGAATCTTTCTTCATCAGGTTCGTAAATCTACGAAACGATTTTTGGTTAGAAAGGTATCCGTCTTCGTCGCCGATAAATTTCTATAGTATGTGTAAATGCTGATGAAGTTCACCACTAATTTGAATACAAAGGAACCAGTTAAATTTTTATTGTCTCGCATTCTGTAAGTTCTGTTATCAGCTAAACAAGAACTGCAAAATCATTATTGACAGGATTATTTT ATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGTGAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATTGTCCCGAGGCATATTCAACTTGCAGTGAGAAACGATGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGCACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAG MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGSTKDKAEIGSASQEF
BLAST of Carg22176-RA vs. NCBI nr
Match: XP_022960479.1 (histone H2AX-like [Cucurbita moschata]) HSP 1 Score: 267.7 bits (683), Expect = 2.3e-68 Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0
BLAST of Carg22176-RA vs. NCBI nr
Match: XP_023004683.1 (histone H2AX-like [Cucurbita maxima]) HSP 1 Score: 266.9 bits (681), Expect = 3.9e-68 Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Carg22176-RA vs. NCBI nr
Match: XP_023548483.1 (histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 257.3 bits (656), Expect = 3.1e-65 Identity = 132/142 (92.96%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Carg22176-RA vs. NCBI nr
Match: XP_022953582.1 (histone H2AX-like [Cucurbita moschata]) HSP 1 Score: 255.8 bits (652), Expect = 8.9e-65 Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 0
BLAST of Carg22176-RA vs. NCBI nr
Match: XP_004148882.1 (PREDICTED: histone H2AX-like [Cucumis sativus] >KGN44845.1 Histone H2A [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 5.8e-64 Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Carg22176-RA vs. TAIR10
Match: AT1G08880.1 (Histone superfamily protein) HSP 1 Score: 216.9 bits (551), Expect = 8.3e-57 Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of Carg22176-RA vs. TAIR10
Match: AT1G54690.1 (gamma histone variant H2AX) HSP 1 Score: 216.5 bits (550), Expect = 1.1e-56 Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of Carg22176-RA vs. TAIR10
Match: AT1G51060.1 (histone H2A 10) HSP 1 Score: 195.7 bits (496), Expect = 2.0e-50 Identity = 102/128 (79.69%), Postives = 113/128 (88.28%), Query Frame = 0
BLAST of Carg22176-RA vs. TAIR10
Match: AT4G27230.1 (histone H2A 2) HSP 1 Score: 193.0 bits (489), Expect = 1.3e-49 Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0
BLAST of Carg22176-RA vs. TAIR10
Match: AT3G20670.1 (histone H2A 13) HSP 1 Score: 190.3 bits (482), Expect = 8.3e-49 Identity = 100/128 (78.12%), Postives = 111/128 (86.72%), Query Frame = 0
BLAST of Carg22176-RA vs. Swiss-Prot
Match: sp|P35063|H2AX_PICAB (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 1.1e-55 Identity = 113/135 (83.70%), Postives = 124/135 (91.85%), Query Frame = 0
BLAST of Carg22176-RA vs. Swiss-Prot
Match: sp|O04848|H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55 Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of Carg22176-RA vs. Swiss-Prot
Match: sp|Q9S9K7|H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 2.0e-55 Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of Carg22176-RA vs. Swiss-Prot
Match: sp|O65759|H2AX_CICAR (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 3.3e-55 Identity = 117/142 (82.39%), Postives = 125/142 (88.03%), Query Frame = 0
BLAST of Carg22176-RA vs. Swiss-Prot
Match: sp|A2XLI0|H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 7.7e-52 Identity = 107/133 (80.45%), Postives = 117/133 (87.97%), Query Frame = 0
BLAST of Carg22176-RA vs. TrEMBL
Match: tr|A0A0A0K525|A0A0A0K525_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 3.8e-64 Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Carg22176-RA vs. TrEMBL
Match: tr|A0A1S3BRH7|A0A1S3BRH7_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 8.5e-64 Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Carg22176-RA vs. TrEMBL
Match: tr|A0A0L9U7S5|A0A0L9U7S5_PHAAN (Histone H2A OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g225700 PE=3 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57 Identity = 125/145 (86.21%), Postives = 132/145 (91.03%), Query Frame = 0
BLAST of Carg22176-RA vs. TrEMBL
Match: tr|A0A0S3RXP1|A0A0S3RXP1_PHAAN (Histone H2A OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G292000 PE=3 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57 Identity = 125/145 (86.21%), Postives = 132/145 (91.03%), Query Frame = 0
BLAST of Carg22176-RA vs. TrEMBL
Match: tr|A0A1S3TRK2|A0A1S3TRK2_VIGRR (Histone H2A OS=Vigna radiata var. radiata OX=3916 GN=LOC106758024 PE=3 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 7.7e-57 Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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