Carg27197-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCATAGCCTGCTATTTGCGAGAGAGAGAGAGTTTTTGGACGAACCCATTGCAGCTGTGATTGAATTTGATGCGCATAGCTATCGTGAGTGTTCAAGAACTTGGAGATGGCTGAATCAGATGGACCTCAGAATCAATCTCCTAACCTTCCTTCTAATGGCGCCAAGGATTCCATTGGCAAGTCCTGTAAGGGCTGCCTCTATTACTCTTCACTTCAGAAATCCAAATCTAAATCTCCCACCTGCGTTGGACTCTCCAAAACCCTCGAACAAGGTACCTCTTTATTGCTTTCATTCGTGCATGTTCATATTCCATTGGATTAGTGATTACCATGAAATTGGGGGTATCGGTAAATGGTTGAGAATCTTTTTAGATTCGTGATTTTGTTGTATTCGATTTCAATTTGGGTTCTGATATGGCTGGTTCTTGAAATCCAAGGAGATTGATATTGTTTTTGCTTTTTTTCTGATTGTTTCATCCTTGGAAGCCATTTCGAACCCTATCATGCATGTTTATGCCTTGGTGGATAAGCTCCCAGTAGTAGAACTTGATATTTGTTGGGTCAAGATGCCACAACCGAGTGTCTTTTTGATGTAGATAGGTAAGAATAGGAGAGAAAGTGGATTAATGAAGCCCTGTTCCTGAATCTCAAAATCCAGTAGGTGAATATGAATCAAGTTATGACGACGAAAATTTGGGAACATTATTATTAGGAGTAGGAATCTTTCAGGATCAAAGTGAAAATTGAACTTCCCTTGCAGAACATTGGCCCGATCTTATAAAGAATGGGACGAGACTATTAGCTGAACGAAGAACGTATTGAATAAACTACATTAGCTCACTTAGAAGCATGAGATAAAGTAGGAGTACTTGTGAAATGGTTTTCGGGTTAGTGTTAGGAACTGGAAAAGGTCTTTGAAAACGGGAGAGGATTAGTCAGAAAAATACGAGCTACGCTCAGATGTCTGCTGCAGCAATGCTTTAGAATGTGATTTGTAACCATGCAAACATCGAGAAATCACTTGGAGTCGTCCGAGTGGTGCAGCTAGCTGCATACTCTATTACTCTCGTTGTGGTTATTGGTCTAAACCTTTGTCATCATGTCCTAGAGATATTAGTATATATGATGGGTCATTGGTTTAGCAGTTGTTTGAGTGGATACATTCATTAATCATTTGAGAATGCATGGGTCGAATATCCTAGATCTATCCATATGTAGAAGAGAATTTGATGGAGGAATTGCCTTTGAATCTATTTAATTGTAAAGGTACGATTGTATTGACTATAGAGATTGATCTCCAACAACTCCGTTAAATGCCTATGAGATCGAGTCTCAATACGAATGCTAGTTCTTACTGTTCTCTCCTCTCCCGATAGCTCGAAGTCAGCTTACAATGATGTTGATACAAGATATTGTAGAACTTACCAATGAGGCCCTATTGATTAGTATTATGCAAAAGATCAGATTCTACGGGATCAAACCTATGGGACATAAGGAATGCTATGAGGGCTTGGACGGAATAAATCAAAAGTCTGCTGGGTGATCGAAATCGCTCAGGTTATTGGAGATGCGTTTTCTACGGAGGATTTGTGGGTAGGAATTGAGCTTCTTTGTGAGTTATTCCCTTGCATTTATCATTTATCTGATCGGAAGTAATTCTCAATGGCCTATATTTTGTCTACTTTTGATTCATCCTCTTCGCCTTCTTTGGGGTTTTGTTGGCGAGTCTTCGAAGGTAATGGGCATAGGAATATTTGGGTTTGGGTTCCTAATCCTCCTAAGGACTTTGGCCCTTTTTCCTCATTCCATGTTCCCCGTCTCCTACTCGGGGCCTTTTGGAGGTGAAAGTCCCTAAGAAAGTGAAGTTCTTTGCTTGACAAGTCTTACTAGGTAGAGTGAGCACCCAGGATTGCATCCAACGATGACATTCTTCGTAACAGCTCAAGCCCACCGCTAGCATATATTGTCTTCTTTGGTCCATTACGTATCGTCGTCTGTCTCACGGTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTTGTCCCCCTCTCCAACCGACGTGGGATTTCACATTCTTCCTTAGTATTGTGTCCATAATGGTGTTTCATTTGTCATCAACAATCGGAGGATCTTGACCATCTTTCGTCGGGTTACCAGTTTGCTTACTCCATGTGGAGTCGTTGTTTTAGGCTGTTTACGTTAGTGTCTATTCGTGTAATTTGTCAGAGGGCTTCTTTTTTGTTATACCCATAGTAAATATCACTTTTTGTAAGCAGTACCAAACTACATAGTGGGAGAAACCGAGCAGGAAGCTTCAAAAGAGGGAAGAAGTCTGACAGATTTCAAGTATGCTTGCGTTGGTTACTCTGTCTACTTAGAAAAGAAAGGTTCATCAAACGACGAACAAAACAAACAAGCTGAGCTGCCGTTCTGCGTCGGTTTAGAGGTTTGTAATGCCTCATCTGCTTATGTTGTGATGCTCTGTTTATTCTTAATAGCCCTTAAAATTCATGTGTAGCCTGAATTTTTTGCCATTTTGTGGGATATTTGGGCTTATTAGGAGGAACTGTTAGATTTTTAAAGGGTCTGAGAGATTTGGGGAGGAGCTTTTGGGGTTCGTTAAATTTAACTCTTCTTTACGAGTGTCCGTTAATTAGACTCTTCGAGCTAAATTAATAAAAATACTCTTGAACTTTATACTTTGTCTCAAATATACCTCTAACTTTCAAAAGTTTTAATAATACCCTTAAACTTTGAAAAAAAGTCTCAAAAACACCCTTTTAAAAAAAGTTCAAAAATACCCTTACAGTCAGTTTTGGATAGAAACTGTTAATACTATGTTTCAAAAGTTTTTATAAGTATTTTTTAAACATAGTATTGACGGTAAGGGTATTTTTTAATTTAATAACGTTGGAAGGGTATTAATGAAAATGTTTAAAATTCAAGGTTATTTTTGAAACACTATTAAAAGTTCAAGAGTATTTTTGAAACATAATACGGTTTCCCTCCAAGAGTAATAATGAGGGTATTTTTTAGATTTTTTAAAAGTTTAAGGGTATTTTTATTAATTTAGCCGACTCTTTGGTCTCGCATGGGTCCCTAGACCCTACAATTTTAGATGCATTTTTAGTTTATATTTCATTAAAATGTTATTCTTTTATCATTTTATATCTTGACAACAATGATATGCCTGTTAGGTATTGTTGGACAAAAGACCTGCGGAACAGTCCCAAGCTCATATACATAATAAAACTGAAGGTACTCCTTCAATTTCCTTTTGTTAATGATAATGCTCATCAAGATTTTCCGATATTCTTCTATTATTTTATCGTCTTAGCTACCTTTGTTTCGAGCTCGATAAATTTGTTAATCCAATGTTGTAGAGCTTAGAAAGCACGAACACTTTGACACTGTTTAGACACGTATTGCACACTTGTGATGAATGTTTGACACTAATGGTACAAATTTAATAGCATGTATGTTAGGTGTCACGGTCATATTTGTCCAAGGCGTGTTGTATTGGCCACATGTTGGATGTCCCGGTCATGCACGTCTAGGACGTGTTGTCCATGCCCATTCCAAACCCTTTTTACATGCTTTCATTTTAGATAGGTCTTTACCACTACATGTTATATCAATACAGGGGCGTATGACTTTTCACCAAAATCATGTCTACACCCACCAGGACTAAAATAAAATGTACTATAGGAGAATGGGACTAGTCGTCAATTCTTCTGAGTTATATACTATTTAAGTCATGATGTTTCTTTCTCTGCTTGTAGCCATCTAACATTGCTTTCTTAAATTCTTTTGAATTGTTTTCAAATGTATTTTCTCGCTCACGTTTTCTAAAACAACTTTCGCAAACGTGACTCAAGGCTCGAGAATACGTTGACGTTGTTTGCGAAGTCCGAATTTCTCAAGCTGACTTGTTCACTGGGTTAGAACAAGTGTTGCACAATTGCTGTCCCCCTACCGCAAGAGTGTGATTGTGACATTAGGCATGCATAGGATACTGGTTTAAGCATAATAACTAGATTTTTACCAAATGTGTCCGTGTGTCCGTGTGTCCGGGTCTTAGATTTTTACCAAATGAACTGTCACCATATTGTGTCTCGTGTCTGTGTCCGTGCTTCTTAGTCGGAGAGATACTAATCTTCAAGTTTGATCTTCGTATTCAACAGATAGCCCCGCCTTTCCACAGCCACGCAGCTATAAACCGTCGTATCCAGCTGGAGACGAGTACCTAAACAGGCAAAAACTTTCTTGACACACTATATCTTTTGAATGCTAAATGGGTTTCAATTTATGAACAATGTCTATGAACAATGTGGTGCAGGTTTAAAAGAAACGCAGCCCTTGTTGCATCAGGTGTAGCAAGAAATGTGAACCGAGTTTGCAACTACATAAAAGAGAGCTTCGACGATATCTTATACCCTTACCGGAGACGACCCAAATGAGATACGGTTGTCCACGGACTACTAGAATAAACAAGAGTCGTTACAATAGTAGTTTGTCGAATCCCGACATCGCCCGATCATGTGAAATATTGATCAAGTTCTTATCTTTCTTACAACTGTGTAGAGATGGGCATGGGTGTAATAAATAATGTGATGAATTTAATCATCTTTAAGGATTGTTCATGCTTGTTC TTCATAGCCTGCTATTTGCGAGAGAGAGAGAGTTTTTGGACGAACCCATTGCAGCTGTGATTGAATTTGATGCGCATAGCTATCGTGAGTGTTCAAGAACTTGGAGATGGCTGAATCAGATGGACCTCAGAATCAATCTCCTAACCTTCCTTCTAATGGCGCCAAGGATTCCATTGGCAAGTCCTGTAAGGGCTGCCTCTATTACTCTTCACTTCAGAAATCCAAATCTAAATCTCCCACCTGCGTTGGACTCTCCAAAACCCTCGAACAAGTACCAAACTACATAGTGGGAGAAACCGAGCAGGAAGCTTCAAAAGAGGGAAGAAGTCTGACAGATTTCAAGTATGCTTGCGTTGGTTACTCTGTCTACTTAGAAAAGAAAGGTTCATCAAACGACGAACAAAACAAACAAGCTGAGCTGCCGTTCTGCGTCGGTTTAGAGGTATTGTTGGACAAAAGACCTGCGGAACAGTCCCAAGCTCATATACATAATAAAACTGAAGATAGCCCCGCCTTTCCACAGCCACGCAGCTATAAACCGTCGTATCCAGCTGGAGACGAGTTTAAAAGAAACGCAGCCCTTGTTGCATCAGGTGTAGCAAGAAATGTGAACCGAGTTTGCAACTACATAAAAGAGAGCTTCGACGATATCTTATACCCTTACCGGAGACGACCCAAATGAGATACGGTTGTCCACGGACTACTAGAATAAACAAGAGTCGTTACAATAGTAGTTTGTCGAATCCCGACATCGCCCGATCATGTGAAATATTGATCAAGTTCTTATCTTTCTTACAACTGTGTAGAGATGGGCATGGGTGTAATAAATAATGTGATGAATTTAATCATCTTTAAGGATTGTTCATGCTTGTTC ATGGCTGAATCAGATGGACCTCAGAATCAATCTCCTAACCTTCCTTCTAATGGCGCCAAGGATTCCATTGGCAAGTCCTGTAAGGGCTGCCTCTATTACTCTTCACTTCAGAAATCCAAATCTAAATCTCCCACCTGCGTTGGACTCTCCAAAACCCTCGAACAAGTACCAAACTACATAGTGGGAGAAACCGAGCAGGAAGCTTCAAAAGAGGGAAGAAGTCTGACAGATTTCAAGTATGCTTGCGTTGGTTACTCTGTCTACTTAGAAAAGAAAGGTTCATCAAACGACGAACAAAACAAACAAGCTGAGCTGCCGTTCTGCGTCGGTTTAGAGGTATTGTTGGACAAAAGACCTGCGGAACAGTCCCAAGCTCATATACATAATAAAACTGAAGATAGCCCCGCCTTTCCACAGCCACGCAGCTATAAACCGTCGTATCCAGCTGGAGACGAGTTTAAAAGAAACGCAGCCCTTGTTGCATCAGGTGTAGCAAGAAATGTGAACCGAGTTTGCAACTACATAAAAGAGAGCTTCGACGATATCTTATACCCTTACCGGAGACGACCCAAATGA MAESDGPQNQSPNLPSNGAKDSIGKSCKGCLYYSSLQKSKSKSPTCVGLSKTLEQVPNYIVGETEQEASKEGRSLTDFKYACVGYSVYLEKKGSSNDEQNKQAELPFCVGLEVLLDKRPAEQSQAHIHNKTEDSPAFPQPRSYKPSYPAGDEFKRNAALVASGVARNVNRVCNYIKESFDDILYPYRRRPK
BLAST of Carg27197-RA vs. NCBI nr
Match: XP_022946944.1 (uncharacterized protein LOC111450972 [Cucurbita moschata]) HSP 1 Score: 384.0 bits (985), Expect = 2.9e-103 Identity = 191/195 (97.95%), Postives = 191/195 (97.95%), Query Frame = 0
BLAST of Carg27197-RA vs. NCBI nr
Match: XP_023533149.1 (uncharacterized protein LOC111795126 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 377.1 bits (967), Expect = 3.6e-101 Identity = 187/194 (96.39%), Postives = 188/194 (96.91%), Query Frame = 0
BLAST of Carg27197-RA vs. NCBI nr
Match: XP_023007309.1 (uncharacterized protein LOC111499844 [Cucurbita maxima]) HSP 1 Score: 369.4 bits (947), Expect = 7.4e-99 Identity = 186/195 (95.38%), Postives = 186/195 (95.38%), Query Frame = 0
BLAST of Carg27197-RA vs. NCBI nr
Match: XP_004150139.1 (PREDICTED: uncharacterized protein LOC101205057 [Cucumis sativus] >KGN61850.1 hypothetical protein Csa_2G251500 [Cucumis sativus]) HSP 1 Score: 354.4 bits (908), Expect = 2.5e-94 Identity = 176/195 (90.26%), Postives = 181/195 (92.82%), Query Frame = 0
BLAST of Carg27197-RA vs. NCBI nr
Match: XP_008461016.1 (PREDICTED: uncharacterized protein LOC103499721 [Cucumis melo]) HSP 1 Score: 345.5 bits (885), Expect = 1.1e-91 Identity = 172/195 (88.21%), Postives = 178/195 (91.28%), Query Frame = 0
BLAST of Carg27197-RA vs. TAIR10
Match: AT3G51100.1 (unknown protein) HSP 1 Score: 165.2 bits (417), Expect = 3.9e-41 Identity = 92/198 (46.46%), Postives = 122/198 (61.62%), Query Frame = 0
BLAST of Carg27197-RA vs. TrEMBL
Match: tr|A0A0A0LIW6|A0A0A0LIW6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G251500 PE=4 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 1.6e-94 Identity = 176/195 (90.26%), Postives = 181/195 (92.82%), Query Frame = 0
BLAST of Carg27197-RA vs. TrEMBL
Match: tr|A0A1S3CEZ6|A0A1S3CEZ6_CUCME (uncharacterized protein LOC103499721 OS=Cucumis melo OX=3656 GN=LOC103499721 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 7.6e-92 Identity = 172/195 (88.21%), Postives = 178/195 (91.28%), Query Frame = 0
BLAST of Carg27197-RA vs. TrEMBL
Match: tr|A0A2I4GBU2|A0A2I4GBU2_9ROSI (uncharacterized protein LOC109006530 isoform X1 OS=Juglans regia OX=51240 GN=LOC109006530 PE=4 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 1.9e-66 Identity = 135/192 (70.31%), Postives = 157/192 (81.77%), Query Frame = 0
BLAST of Carg27197-RA vs. TrEMBL
Match: tr|A0A2P4IAG8|A0A2P4IAG8_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_47114 PE=4 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 1.9e-66 Identity = 131/178 (73.60%), Postives = 149/178 (83.71%), Query Frame = 0
BLAST of Carg27197-RA vs. TrEMBL
Match: tr|A0A2I4GBT5|A0A2I4GBT5_9ROSI (uncharacterized protein LOC109006530 isoform X2 OS=Juglans regia OX=51240 GN=LOC109006530 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 4.2e-66 Identity = 134/192 (69.79%), Postives = 157/192 (81.77%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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