Carg05271-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05271-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA cytidine acetyltransferase
Location	Cucurbita_argyrosperma_scaffold_010 : 824832 .. 825355 (-)
Sequence length	433

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGTAAGATTCATGCTTCATATTATGATGCAGATGGTGCGCGCACACGCACGCTTATCTTATAAATCAACTCTTTGCTGGAATGGAAATGCAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAAAAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCCTTGACAGTAGGCTAGGAAAAGACGAGAAGAGGCTTGTAGCAATGCCTAATTGGCCTTAG

mRNA sequence

ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAAAAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCCTTGACAGTAGGCTAGGAAAAGACGAGAAGAGGCTTGTAGCAATGCCTAATTGGCCTTAG

Coding sequence (CDS)

ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAA

Protein sequence

MILLQIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFDGALPSGGKIPSGGVVSVKSNKTKAEKQVKKKEKEQSSRKRSKDDGFKSNKKKKA

Homology

[Close]

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_022963048.1 (RNA cytidine acetyltransferase 2-like [Cucurbita moschata])

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX 64
            +IPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX
Sbjct: 925  EIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX 984

Query: 65   XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA 111
            XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA
Sbjct: 985  XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA 1030

[Close]

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_023518075.1 (RNA cytidine acetyltransferase 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 88/106 (83.02%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX 64
            +IPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF         
Sbjct: 925  EIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFDGALASGGK 984

Query: 65   XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA 111
                   SVKSNKTKAEXXXXXXXXXXXXXXXXXX GFKSNKKKKA
Sbjct: 985  IPSGGVVSVKSNKTKAEXXXXXXXXXXXXXXXXXXXGFKSNKKKKA 1030

[Close]

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_023003399.1 (RNA cytidine acetyltransferase 1-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 7.0e-25
Identity = 86/106 (81.13%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX 64
            +IPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF         
Sbjct: 925  EIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFDGALASGGK 984

Query: 65   XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA 111
                   SVKSNKTKAE XXXXXXXXXXXXXXXXX  FKSNKKKKA
Sbjct: 985  IPSGGFVSVKSNKTKAEKXXXXXXXXXXXXXXXXXXXFKSNKKKKA 1030

[Close]

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_022132534.1 (RNA cytidine acetyltransferase 2-like [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-21
Identity = 71/106 (66.98%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF-XXXXXXXX 64
            +IP+EPHEITVDDDL E AKQVEEKMKM NEG LDVGMLQQYAIVDGEVD          
Sbjct: 924  EIPMEPHEITVDDDLHEAAKQVEEKMKMNNEGLLDVGMLQQYAIVDGEVDLAGALQSGGG 983

Query: 65   XXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKK 110
                    SVKSNKTKAE          XXXXXXX DGFKSNKKKK
Sbjct: 984  KIPSGGVVSVKSNKTKAEKQGKRKEKDHXXXXXXXDDGFKSNKKKK 1029

[Close]

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_004141967.1 (PREDICTED: UPF0202 protein At1g10490 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 79/106 (74.53%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF-XXXXXXXX 64
            +IPLEPHEI+VDDDL E AKQVEEKMKM NEG LDVGMLQQYAIVDG+VD          
Sbjct: 925  EIPLEPHEISVDDDLHEAAKQVEEKMKMNNEGLLDVGMLQQYAIVDGDVDLAGALQSGGG 984

Query: 65   XXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKK 110
                    SVKSNKTKAE XXXXXXXXXXXXXXXXX GFKSNKKKK
Sbjct: 985  KVPSGGVVSVKSNKTKAE-XXXXXXXXXXXXXXXXXXGFKSNKKKK 1029

[Close]

BLAST of Carg05271-RA vs. TAIR10
Match: AT1G10490.1 (Domain of unknown function (DUF1726) ;Putative ATPase (DUF699))

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-08
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 8   LEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVD 55
           LEPH+++VD+DL+EGAK+VEE+M+ + E  LD  +L Q+AI D E +
Sbjct: 930 LEPHKVSVDEDLREGAKEVEEQMRARIEELLDPELLDQFAIGDKEAE 976

[Close]

BLAST of Carg05271-RA vs. TAIR10
Match: AT3G57940.1 (Domain of unknown function (DUF1726) ;Putative ATPase (DUF699))

HSP 1 Score: 47.0 bits (110), Expect = 8.8e-06
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 8   LEPHEITVDDDLKEGAKQVEEKMKM-KNEGSLDVGMLQQYAIVDGEVD 55
           L  H ++VDDD++EGAKQVEE+MK  K EG +D   LQQY I D E +
Sbjct: 926 LTAHNVSVDDDIREGAKQVEEQMKKEKIEGLMD-SELQQYVIGDKEAE 972

[Close]

BLAST of Carg05271-RA vs. Swiss-Prot
Match: sp|Q9XIK4|NT101_ARATH (RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g10490 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 8   LEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVD 55
           LEPH+++VD+DL+EGAK+VEE+M+ + E  LD  +L Q+AI D E +
Sbjct: 930 LEPHKVSVDEDLREGAKEVEEQMRARIEELLDPELLDQFAIGDKEAE 976

[Close]

BLAST of Carg05271-RA vs. Swiss-Prot
Match: sp|Q9M2Q4|NT102_ARATH (RNA cytidine acetyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At3g57940 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 8   LEPHEITVDDDLKEGAKQVEEKMKM-KNEGSLDVGMLQQYAIVDGEVD 55
           L  H ++VDDD++EGAKQVEE+MK  K EG +D   LQQY I D E +
Sbjct: 926 LTAHNVSVDDDIREGAKQVEEQMKKEKIEGLMD-SELQQYVIGDKEAE 972

[Close]

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A0A0KFD1|A0A0A0KFD1_CUCSA (RNA cytidine acetyltransferase OS=Cucumis sativus OX=3659 GN=Csa_6G486930 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 79/106 (74.53%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF-XXXXXXXX 64
            +IPLEPHEI+VDDDL E AKQVEEKMKM NEG LDVGMLQQYAIVDG+VD          
Sbjct: 913  EIPLEPHEISVDDDLHEAAKQVEEKMKMNNEGLLDVGMLQQYAIVDGDVDLAGALQSGGG 972

Query: 65   XXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKK 110
                    SVKSNKTKAE XXXXXXXXXXXXXXXXX GFKSNKKKK
Sbjct: 973  KVPSGGVVSVKSNKTKAE-XXXXXXXXXXXXXXXXXXGFKSNKKKK 1017

[Close]

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A1S3AZZ3|A0A1S3AZZ3_CUCME (RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103484684 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 75/106 (70.75%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF-XXXXXXXX 64
            +IPLEPHEI+VDDDL E AKQVEEKMKM NEG LDVGMLQQYAIVDG+VDF         
Sbjct: 925  EIPLEPHEISVDDDLHEAAKQVEEKMKMNNEGLLDVGMLQQYAIVDGDVDFAGALQSGGG 984

Query: 65   XXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKK 110
                    SVKSNKTKAE  XXXXXXXXXXXXXXXX     NKKKK
Sbjct: 985  KVPSGGVVSVKSNKTKAEKQXXXXXXXXXXXXXXXXXXXXXNKKKK 1030

[Close]

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A2P4JYD7|A0A2P4JYD7_QUESU (RNA cytidine acetyltransferase OS=Quercus suber OX=58331 GN=CFP56_07121 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11
Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 3    LLQIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXX 62
            L +I +EPH I+VD+DLK  AKQVE++MK K EGSL+  +LQQYAIVD + DF       
Sbjct: 923  LKEIVMEPHSISVDEDLKNAAKQVEDEMKSKMEGSLNPELLQQYAIVDRDADFENALQIG 982

Query: 63   XXXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXD-GFKSNKKKKA 111
                     SVKS+  K E                  D G KSNKKKK+
Sbjct: 983  GKVPSGGLVSVKSSGNKIEKHRNQKESPKSGKKRSKDDRGSKSNKKKKS 1031

[Close]

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A1Q3B5U7|A0A1Q3B5U7_CEPFO (GNAT_acetyltr_2 domain-containing protein/tRNA_bind_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06662 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 46/104 (44.23%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 8   LEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXXXXX 67
           LEPH I++DDDL E AKQVE+ MK K EG L+   LQQ+AIVD E DF            
Sbjct: 348 LEPHSISMDDDLNEAAKQVEDGMKTKMEGLLNPDFLQQFAIVDREADFDNALQNGGKLPS 407

Query: 68  XXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXD-GFKSNKKKKA 111
               SVKSN++K E                  D G+KSNKK K+
Sbjct: 408 SGLVSVKSNRSKVEKRGMQKESHKNGKKRSKDDRGYKSNKKIKS 451

[Close]

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A1Q3DHJ7|A0A1Q3DHJ7_CEPFO (Helicase_RecD domain-containing protein/GNAT_acetyltr_2 domain-containing protein/tRNA_bind_2 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_35160 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 4   LQIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXX 63
           +Q  LEPH I++DDDL E AKQVE+ MK K EG L+   LQQ+AIVD E DF        
Sbjct: 525 IQRVLEPHSISMDDDLNEAAKQVEDGMKTKMEGLLNPDFLQQFAIVDREADFENALQNGG 584

Query: 64  XXXXXXXXSVKSNKTKAE 82
                   SVKSN++K E
Sbjct: 585 KLPSIGLVSVKSNRSKVE 602

The following BLAST results are available for this feature:

BLAST of Carg05271-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963048.1	1.7e-26	99.06	RNA cytidine acetyltransferase 2-like [Cucurbita moschata]	[more]
XP_023518075.1	1.1e-25	83.02	RNA cytidine acetyltransferase 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003399.1	7.0e-25	81.13	RNA cytidine acetyltransferase 1-like [Cucurbita maxima]	[more]
XP_022132534.1	4.7e-21	66.98	RNA cytidine acetyltransferase 2-like [Momordica charantia]	[more]
XP_004141967.1	2.2e-18	74.53	PREDICTED: UPF0202 protein At1g10490 [Cucumis sativus]	[more]

BLAST of Carg05271-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10490.1	9.4e-08	53.19	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)	[more]
AT3G57940.1	8.8e-06	56.25	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)	[more]

BLAST of Carg05271-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XIK4\|NT101_ARATH	1.7e-06	53.19	RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g10490 PE...	[more]
sp\|Q9M2Q4\|NT102_ARATH	1.6e-04	56.25	RNA cytidine acetyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At3g57940 PE...	[more]

BLAST of Carg05271-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFD1\|A0A0A0KFD1_CUCSA	1.4e-18	74.53	RNA cytidine acetyltransferase OS=Cucumis sativus OX=3659 GN=Csa_6G486930 PE=3 S...	[more]
tr\|A0A1S3AZZ3\|A0A1S3AZZ3_CUCME	1.2e-17	70.75	RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103484684 PE=3 SV=1	[more]
tr\|A0A2P4JYD7\|A0A2P4JYD7_QUESU	6.5e-11	44.04	RNA cytidine acetyltransferase OS=Quercus suber OX=58331 GN=CFP56_07121 PE=3 SV=...	[more]
tr\|A0A1Q3B5U7\|A0A1Q3B5U7_CEPFO	2.5e-10	44.23	GNAT_acetyltr_2 domain-containing protein/tRNA_bind_2 domain-containing protein ...	[more]
tr\|A0A1Q3DHJ7\|A0A1Q3DHJ7_CEPFO	2.7e-09	50.00	Helicase_RecD domain-containing protein/GNAT_acetyltr_2 domain-containing protei...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027992	tRNA_bind_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05271	Carg05271	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05271-RA.three_prime_UTR.1	Carg05271-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05271-RA.CDS.2	Carg05271-RA.CDS.2	CDS
Carg05271-RA.CDS.1	Carg05271-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05271-RA.exon.2	Carg05271-RA.exon.2	exon
Carg05271-RA.exon.1	Carg05271-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05271-RA	Carg05271-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..90
None	No IPR available	COILS	Coil	Coil	coord: 108..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..110
IPR027992	Possible tRNA binding domain	PFAM	PF13725	tRNA_bind_2	coord: 8..58 e-value: 1.8E-7 score: 31.0