Carg05271 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGTAAGATTCATGCTTCATATTATGATGCAGATGGTGCGCGCACACGCACGCTTATCTTATAAATCAACTCTTTGCTGGAATGGAAATGCAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAAAAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCCTTGACAGTAGGCTAGGAAAAGACGAGAAGAGGCTTGTAGCAATGCCTAATTGGCCTTAG ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAAAAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCCTTGACAGTAGGCTAGGAAAAGACGAGAAGAGGCTTGTAGCAATGCCTAATTGGCCTTAG ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAA MILLQIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFDGALPSGGKIPSGGVVSVKSNKTKAEKQVKKKEKEQSSRKRSKDDGFKSNKKKKA
BLAST of Carg05271 vs. NCBI nr
Match: XP_022963048.1 (RNA cytidine acetyltransferase 2-like [Cucurbita moschata]) HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26 Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0
BLAST of Carg05271 vs. NCBI nr
Match: XP_023518075.1 (RNA cytidine acetyltransferase 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25 Identity = 88/106 (83.02%), Postives = 89/106 (83.96%), Query Frame = 0
BLAST of Carg05271 vs. NCBI nr
Match: XP_023003399.1 (RNA cytidine acetyltransferase 1-like [Cucurbita maxima]) HSP 1 Score: 122.9 bits (307), Expect = 7.0e-25 Identity = 86/106 (81.13%), Postives = 87/106 (82.08%), Query Frame = 0
BLAST of Carg05271 vs. NCBI nr
Match: XP_022132534.1 (RNA cytidine acetyltransferase 2-like [Momordica charantia]) HSP 1 Score: 110.2 bits (274), Expect = 4.7e-21 Identity = 71/106 (66.98%), Postives = 73/106 (68.87%), Query Frame = 0
BLAST of Carg05271 vs. NCBI nr
Match: XP_004141967.1 (PREDICTED: UPF0202 protein At1g10490 [Cucumis sativus]) HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18 Identity = 79/106 (74.53%), Postives = 82/106 (77.36%), Query Frame = 0
BLAST of Carg05271 vs. TAIR10
Match: AT1G10490.1 (Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)) HSP 1 Score: 53.5 bits (127), Expect = 9.4e-08 Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0
BLAST of Carg05271 vs. TAIR10
Match: AT3G57940.1 (Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)) HSP 1 Score: 47.0 bits (110), Expect = 8.8e-06 Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of Carg05271 vs. Swiss-Prot
Match: sp|Q9XIK4|NT101_ARATH (RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g10490 PE=2 SV=2) HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06 Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0
BLAST of Carg05271 vs. Swiss-Prot
Match: sp|Q9M2Q4|NT102_ARATH (RNA cytidine acetyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At3g57940 PE=2 SV=2) HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04 Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of Carg05271 vs. TrEMBL
Match: tr|A0A0A0KFD1|A0A0A0KFD1_CUCSA (RNA cytidine acetyltransferase OS=Cucumis sativus OX=3659 GN=Csa_6G486930 PE=3 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18 Identity = 79/106 (74.53%), Postives = 82/106 (77.36%), Query Frame = 0
BLAST of Carg05271 vs. TrEMBL
Match: tr|A0A1S3AZZ3|A0A1S3AZZ3_CUCME (RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103484684 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17 Identity = 75/106 (70.75%), Postives = 78/106 (73.58%), Query Frame = 0
BLAST of Carg05271 vs. TrEMBL
Match: tr|A0A2P4JYD7|A0A2P4JYD7_QUESU (RNA cytidine acetyltransferase OS=Quercus suber OX=58331 GN=CFP56_07121 PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11 Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = 0
BLAST of Carg05271 vs. TrEMBL
Match: tr|A0A1Q3B5U7|A0A1Q3B5U7_CEPFO (GNAT_acetyltr_2 domain-containing protein/tRNA_bind_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06662 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10 Identity = 46/104 (44.23%), Postives = 55/104 (52.88%), Query Frame = 0
BLAST of Carg05271 vs. TrEMBL
Match: tr|A0A1Q3DHJ7|A0A1Q3DHJ7_CEPFO (Helicase_RecD domain-containing protein/GNAT_acetyltr_2 domain-containing protein/tRNA_bind_2 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_35160 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09 Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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