Carg05271-RA (mRNA) Silver-seed gourd

NameCarg05271-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA cytidine acetyltransferase
LocationCucurbita_argyrosperma_scaffold_010 : 824832 .. 825355 (-)
Sequence length433
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGTAAGATTCATGCTTCATATTATGATGCAGATGGTGCGCGCACACGCACGCTTATCTTATAAATCAACTCTTTGCTGGAATGGAAATGCAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAAAAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCCTTGACAGTAGGCTAGGAAAAGACGAGAAGAGGCTTGTAGCAATGCCTAATTGGCCTTAG

mRNA sequence

ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAAAAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCCTTGACAGTAGGCTAGGAAAAGACGAGAAGAGGCTTGTAGCAATGCCTAATTGGCCTTAG

Coding sequence (CDS)

ATGATTTTACTGCAGATTCCACTGGAACCCCATGAGATCACTGTTGATGATGATCTCAAGGAAGGCGCAAAACAAGTTGAGGAGAAAATGAAAATGAAGAATGAGGGGTCGTTAGATGTTGGGATGCTGCAACAATATGCCATTGTGGATGGAGAGGTTGATTTTGATGGTGCTTTGCCAAGTGGTGGAAAGATTCCCTCTGGCGGAGTTGTAAGTGTAAAATCCAATAAAACGAAGGCAGAGAAGCAAGTGAAGAAGAAAGAAAAAGAGCAGAGCAGTAGAAAACGAAGTAAAGATGATGGTTTCAAATCAAATAAAAAGAAGAAGGCTTAA

Protein sequence

MILLQIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFDGALPSGGKIPSGGVVSVKSNKTKAEKQVKKKEKEQSSRKRSKDDGFKSNKKKKA
BLAST of Carg05271-RA vs. NCBI nr
Match: XP_022963048.1 (RNA cytidine acetyltransferase 2-like [Cucurbita moschata])

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX 64
            +IPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX
Sbjct: 925  EIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX 984

Query: 65   XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA 111
            XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA
Sbjct: 985  XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA 1030

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_023518075.1 (RNA cytidine acetyltransferase 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 88/106 (83.02%), Postives = 89/106 (83.96%), Query Frame = 0

Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX 64
            +IPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF         
Sbjct: 925  EIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFDGALASGGK 984

Query: 65   XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA 111
                   SVKSNKTKAEXXXXXXXXXXXXXXXXXX GFKSNKKKKA
Sbjct: 985  IPSGGVVSVKSNKTKAEXXXXXXXXXXXXXXXXXXXGFKSNKKKKA 1030

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_023003399.1 (RNA cytidine acetyltransferase 1-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 7.0e-25
Identity = 86/106 (81.13%), Postives = 87/106 (82.08%), Query Frame = 0

Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXX 64
            +IPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF         
Sbjct: 925  EIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFDGALASGGK 984

Query: 65   XXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKKA 111
                   SVKSNKTKAE XXXXXXXXXXXXXXXXX  FKSNKKKKA
Sbjct: 985  IPSGGFVSVKSNKTKAEKXXXXXXXXXXXXXXXXXXXFKSNKKKKA 1030

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_022132534.1 (RNA cytidine acetyltransferase 2-like [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-21
Identity = 71/106 (66.98%), Postives = 73/106 (68.87%), Query Frame = 0

Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF-XXXXXXXX 64
            +IP+EPHEITVDDDL E AKQVEEKMKM NEG LDVGMLQQYAIVDGEVD          
Sbjct: 924  EIPMEPHEITVDDDLHEAAKQVEEKMKMNNEGLLDVGMLQQYAIVDGEVDLAGALQSGGG 983

Query: 65   XXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKK 110
                    SVKSNKTKAE          XXXXXXX DGFKSNKKKK
Sbjct: 984  KIPSGGVVSVKSNKTKAEKQGKRKEKDHXXXXXXXDDGFKSNKKKK 1029

BLAST of Carg05271-RA vs. NCBI nr
Match: XP_004141967.1 (PREDICTED: UPF0202 protein At1g10490 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 79/106 (74.53%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF-XXXXXXXX 64
            +IPLEPHEI+VDDDL E AKQVEEKMKM NEG LDVGMLQQYAIVDG+VD          
Sbjct: 925  EIPLEPHEISVDDDLHEAAKQVEEKMKMNNEGLLDVGMLQQYAIVDGDVDLAGALQSGGG 984

Query: 65   XXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKK 110
                    SVKSNKTKAE XXXXXXXXXXXXXXXXX GFKSNKKKK
Sbjct: 985  KVPSGGVVSVKSNKTKAE-XXXXXXXXXXXXXXXXXXGFKSNKKKK 1029

BLAST of Carg05271-RA vs. TAIR10
Match: AT1G10490.1 (Domain of unknown function (DUF1726) ;Putative ATPase (DUF699))

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-08
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 8   LEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVD 55
           LEPH+++VD+DL+EGAK+VEE+M+ + E  LD  +L Q+AI D E +
Sbjct: 930 LEPHKVSVDEDLREGAKEVEEQMRARIEELLDPELLDQFAIGDKEAE 976

BLAST of Carg05271-RA vs. TAIR10
Match: AT3G57940.1 (Domain of unknown function (DUF1726) ;Putative ATPase (DUF699))

HSP 1 Score: 47.0 bits (110), Expect = 8.8e-06
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 8   LEPHEITVDDDLKEGAKQVEEKMKM-KNEGSLDVGMLQQYAIVDGEVD 55
           L  H ++VDDD++EGAKQVEE+MK  K EG +D   LQQY I D E +
Sbjct: 926 LTAHNVSVDDDIREGAKQVEEQMKKEKIEGLMD-SELQQYVIGDKEAE 972

BLAST of Carg05271-RA vs. Swiss-Prot
Match: sp|Q9XIK4|NT101_ARATH (RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g10490 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 8   LEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVD 55
           LEPH+++VD+DL+EGAK+VEE+M+ + E  LD  +L Q+AI D E +
Sbjct: 930 LEPHKVSVDEDLREGAKEVEEQMRARIEELLDPELLDQFAIGDKEAE 976

BLAST of Carg05271-RA vs. Swiss-Prot
Match: sp|Q9M2Q4|NT102_ARATH (RNA cytidine acetyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At3g57940 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 8   LEPHEITVDDDLKEGAKQVEEKMKM-KNEGSLDVGMLQQYAIVDGEVD 55
           L  H ++VDDD++EGAKQVEE+MK  K EG +D   LQQY I D E +
Sbjct: 926 LTAHNVSVDDDIREGAKQVEEQMKKEKIEGLMD-SELQQYVIGDKEAE 972

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A0A0KFD1|A0A0A0KFD1_CUCSA (RNA cytidine acetyltransferase OS=Cucumis sativus OX=3659 GN=Csa_6G486930 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 79/106 (74.53%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF-XXXXXXXX 64
            +IPLEPHEI+VDDDL E AKQVEEKMKM NEG LDVGMLQQYAIVDG+VD          
Sbjct: 913  EIPLEPHEISVDDDLHEAAKQVEEKMKMNNEGLLDVGMLQQYAIVDGDVDLAGALQSGGG 972

Query: 65   XXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKK 110
                    SVKSNKTKAE XXXXXXXXXXXXXXXXX GFKSNKKKK
Sbjct: 973  KVPSGGVVSVKSNKTKAE-XXXXXXXXXXXXXXXXXXGFKSNKKKK 1017

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A1S3AZZ3|A0A1S3AZZ3_CUCME (RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103484684 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 75/106 (70.75%), Postives = 78/106 (73.58%), Query Frame = 0

Query: 5    QIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDF-XXXXXXXX 64
            +IPLEPHEI+VDDDL E AKQVEEKMKM NEG LDVGMLQQYAIVDG+VDF         
Sbjct: 925  EIPLEPHEISVDDDLHEAAKQVEEKMKMNNEGLLDVGMLQQYAIVDGDVDFAGALQSGGG 984

Query: 65   XXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXDGFKSNKKKK 110
                    SVKSNKTKAE  XXXXXXXXXXXXXXXX     NKKKK
Sbjct: 985  KVPSGGVVSVKSNKTKAEKQXXXXXXXXXXXXXXXXXXXXXNKKKK 1030

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A2P4JYD7|A0A2P4JYD7_QUESU (RNA cytidine acetyltransferase OS=Quercus suber OX=58331 GN=CFP56_07121 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11
Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = 0

Query: 3    LLQIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXX 62
            L +I +EPH I+VD+DLK  AKQVE++MK K EGSL+  +LQQYAIVD + DF       
Sbjct: 923  LKEIVMEPHSISVDEDLKNAAKQVEDEMKSKMEGSLNPELLQQYAIVDRDADFENALQIG 982

Query: 63   XXXXXXXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXD-GFKSNKKKKA 111
                     SVKS+  K E                  D G KSNKKKK+
Sbjct: 983  GKVPSGGLVSVKSSGNKIEKHRNQKESPKSGKKRSKDDRGSKSNKKKKS 1031

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A1Q3B5U7|A0A1Q3B5U7_CEPFO (GNAT_acetyltr_2 domain-containing protein/tRNA_bind_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06662 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 46/104 (44.23%), Postives = 55/104 (52.88%), Query Frame = 0

Query: 8   LEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXXXXXX 67
           LEPH I++DDDL E AKQVE+ MK K EG L+   LQQ+AIVD E DF            
Sbjct: 348 LEPHSISMDDDLNEAAKQVEDGMKTKMEGLLNPDFLQQFAIVDREADFDNALQNGGKLPS 407

Query: 68  XXXXSVKSNKTKAEXXXXXXXXXXXXXXXXXXD-GFKSNKKKKA 111
               SVKSN++K E                  D G+KSNKK K+
Sbjct: 408 SGLVSVKSNRSKVEKRGMQKESHKNGKKRSKDDRGYKSNKKIKS 451

BLAST of Carg05271-RA vs. TrEMBL
Match: tr|A0A1Q3DHJ7|A0A1Q3DHJ7_CEPFO (Helicase_RecD domain-containing protein/GNAT_acetyltr_2 domain-containing protein/tRNA_bind_2 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_35160 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 4   LQIPLEPHEITVDDDLKEGAKQVEEKMKMKNEGSLDVGMLQQYAIVDGEVDFXXXXXXXX 63
           +Q  LEPH I++DDDL E AKQVE+ MK K EG L+   LQQ+AIVD E DF        
Sbjct: 525 IQRVLEPHSISMDDDLNEAAKQVEDGMKTKMEGLLNPDFLQQFAIVDREADFENALQNGG 584

Query: 64  XXXXXXXXSVKSNKTKAE 82
                   SVKSN++K E
Sbjct: 585 KLPSIGLVSVKSNRSKVE 602

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022963048.11.7e-2699.06RNA cytidine acetyltransferase 2-like [Cucurbita moschata][more]
XP_023518075.11.1e-2583.02RNA cytidine acetyltransferase 2-like [Cucurbita pepo subsp. pepo][more]
XP_023003399.17.0e-2581.13RNA cytidine acetyltransferase 1-like [Cucurbita maxima][more]
XP_022132534.14.7e-2166.98RNA cytidine acetyltransferase 2-like [Momordica charantia][more]
XP_004141967.12.2e-1874.53PREDICTED: UPF0202 protein At1g10490 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT1G10490.19.4e-0853.19Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)[more]
AT3G57940.18.8e-0656.25Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)[more]
Match NameE-valueIdentityDescription
sp|Q9XIK4|NT101_ARATH1.7e-0653.19RNA cytidine acetyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g10490 PE... [more]
sp|Q9M2Q4|NT102_ARATH1.6e-0456.25RNA cytidine acetyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At3g57940 PE... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KFD1|A0A0A0KFD1_CUCSA1.4e-1874.53RNA cytidine acetyltransferase OS=Cucumis sativus OX=3659 GN=Csa_6G486930 PE=3 S... [more]
tr|A0A1S3AZZ3|A0A1S3AZZ3_CUCME1.2e-1770.75RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103484684 PE=3 SV=1[more]
tr|A0A2P4JYD7|A0A2P4JYD7_QUESU6.5e-1144.04RNA cytidine acetyltransferase OS=Quercus suber OX=58331 GN=CFP56_07121 PE=3 SV=... [more]
tr|A0A1Q3B5U7|A0A1Q3B5U7_CEPFO2.5e-1044.23GNAT_acetyltr_2 domain-containing protein/tRNA_bind_2 domain-containing protein ... [more]
tr|A0A1Q3DHJ7|A0A1Q3DHJ7_CEPFO2.7e-0950.00Helicase_RecD domain-containing protein/GNAT_acetyltr_2 domain-containing protei... [more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR027992tRNA_bind_dom
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg05271Carg05271gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05271-RA.three_prime_UTR.1Carg05271-RA.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05271-RA.CDS.2Carg05271-RA.CDS.2CDS
Carg05271-RA.CDS.1Carg05271-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05271-RA.exon.2Carg05271-RA.exon.2exon
Carg05271-RA.exon.1Carg05271-RA.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg05271-RACarg05271-RA-proteinpolypeptide


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 70..90
NoneNo IPR availableCOILSCoilCoilcoord: 108..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..110
IPR027992Possible tRNA binding domainPFAMPF13725tRNA_bind_2coord: 8..58
e-value: 1.8E-7
score: 31.0