Carg05161-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW
BLAST of Carg05161-RA vs. NCBI nr
Match: XP_022947327.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022947328.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]) HSP 1 Score: 321.6 bits (823), Expect = 1.4e-84 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of Carg05161-RA vs. NCBI nr
Match: XP_022971123.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022971124.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]) HSP 1 Score: 321.2 bits (822), Expect = 1.8e-84 Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of Carg05161-RA vs. NCBI nr
Match: XP_023534541.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023534542.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]) HSP 1 Score: 319.3 bits (817), Expect = 7.0e-84 Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0
BLAST of Carg05161-RA vs. NCBI nr
Match: XP_004139989.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN46618.1 hypothetical protein Csa_6G113550 [Cucumis sativus]) HSP 1 Score: 298.9 bits (764), Expect = 9.7e-78 Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 0
BLAST of Carg05161-RA vs. NCBI nr
Match: XP_008448128.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo]) HSP 1 Score: 296.2 bits (757), Expect = 6.3e-77 Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 0
BLAST of Carg05161-RA vs. TAIR10
Match: AT2G04240.1 (RING/U-box superfamily protein) HSP 1 Score: 168.7 bits (426), Expect = 2.8e-42 Identity = 89/159 (55.97%), Postives = 110/159 (69.18%), Query Frame = 0
BLAST of Carg05161-RA vs. TAIR10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2) HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15 Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 0
BLAST of Carg05161-RA vs. TAIR10
Match: AT1G67856.1 (RING/U-box superfamily protein) HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13 Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 0
BLAST of Carg05161-RA vs. TAIR10
Match: AT2G01150.1 (RING-H2 finger protein 2B) HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of Carg05161-RA vs. TAIR10
Match: AT4G11370.1 (RING-H2 finger A1A) HSP 1 Score: 68.6 bits (166), Expect = 3.9e-12 Identity = 41/146 (28.08%), Postives = 70/146 (47.95%), Query Frame = 0
BLAST of Carg05161-RA vs. Swiss-Prot
Match: sp|Q9SI09|XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41 Identity = 89/159 (55.97%), Postives = 110/159 (69.18%), Query Frame = 0
BLAST of Carg05161-RA vs. Swiss-Prot
Match: sp|Q9ZU51|RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2) HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of Carg05161-RA vs. Swiss-Prot
Match: sp|Q9SUS4|RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 7.0e-11 Identity = 41/146 (28.08%), Postives = 70/146 (47.95%), Query Frame = 0
BLAST of Carg05161-RA vs. Swiss-Prot
Match: sp|Q9SUS5|RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10 Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 0
BLAST of Carg05161-RA vs. Swiss-Prot
Match: sp|Q9ZT50|RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10 Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0
BLAST of Carg05161-RA vs. TrEMBL
Match: tr|A0A0A0KAU4|A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G113550 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 6.4e-78 Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 0
BLAST of Carg05161-RA vs. TrEMBL
Match: tr|A0A1S3BIY9|A0A1S3BIY9_CUCME (probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103490418 PE=4 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 4.2e-77 Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 0
BLAST of Carg05161-RA vs. TrEMBL
Match: tr|A0A2P5ER22|A0A2P5ER22_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_161910 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 2.5e-61 Identity = 119/161 (73.91%), Postives = 133/161 (82.61%), Query Frame = 0
BLAST of Carg05161-RA vs. TrEMBL
Match: tr|A0A061DMB3|A0A061DMB3_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_002456 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 2.5e-61 Identity = 118/152 (77.63%), Postives = 132/152 (86.84%), Query Frame = 0
BLAST of Carg05161-RA vs. TrEMBL
Match: tr|F6HHR0|F6HHR0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0057g01330 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 7.1e-61 Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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