Carg05161 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05161
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING zinc finger protein
Location	Cucurbita_argyrosperma_scaffold_010 : 209630 .. 210085 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA

mRNA sequence

ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA

Coding sequence (CDS)

ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA

Protein sequence

MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW

Homology

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BLAST of Carg05161 vs. NCBI nr
Match: XP_022947327.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022947328.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 1.4e-84
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID 60
           MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID 60

Query: 61  FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV 120
           FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV
Sbjct: 61  FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV 120

Query: 121 CLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           CLEKWLDYWNITCPLCRTPLMPEEETASCFW
Sbjct: 121 CLEKWLDYWNITCPLCRTPLMPEEETASCFW 151

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BLAST of Carg05161 vs. NCBI nr
Match: XP_022971123.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022971124.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 321.2 bits (822), Expect = 1.8e-84
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID 60
           MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID 60

Query: 61  FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV 120
           FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV
Sbjct: 61  FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV 120

Query: 121 CLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           CLEKWLDYWN+TCPLCRTPLMPEEETASCFW
Sbjct: 121 CLEKWLDYWNVTCPLCRTPLMPEEETASCFW 151

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BLAST of Carg05161 vs. NCBI nr
Match: XP_023534541.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023534542.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.3 bits (817), Expect = 7.0e-84
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID 60
           MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLS PSSSDSMENSPESID
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSAPSSSDSMENSPESID 60

Query: 61  FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV 120
           FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV
Sbjct: 61  FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRV 120

Query: 121 CLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           CLEKWLDYWN+TCPLCRTPLMPEEETASCFW
Sbjct: 121 CLEKWLDYWNVTCPLCRTPLMPEEETASCFW 151

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BLAST of Carg05161 vs. NCBI nr
Match: XP_004139989.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN46618.1 hypothetical protein Csa_6G113550 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 9.7e-78
Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLST----PSSSDSMENSP 60
           MGLSSLPAPSEGVLGVILVNTA+SISIFKGIVRSILHVVGIHLS+    PSS DSMEN+P
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHV 120
           ESI+F LNPNG YIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH+
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           FHRVCLEKWLDYWN+TCPLCRTPLMPEE+TASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]

BLAST of Carg05161 vs. NCBI nr
Match: XP_008448128.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 6.3e-77
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLST-----PSSSDSMENS 60
           MGLSSLPAPSEGVLGVILVNTA+SISIFKGIVRSILHVVGIHLS+     PSS DSMEN+
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESI+F LNPNG YIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 VFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           +FH VCLEKWLDYWN+TCPLCRTPLMPEE+TASCFW
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156

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BLAST of Carg05161 vs. TAIR10
Match: AT2G04240.1 (RING/U-box superfamily protein)

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-42
Identity = 89/159 (55.97%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPS--------SSDSM 60
           MGLSSLP PSEG+L VILVNTA+SISI KGIVRS L +VGI LS PS             
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSXXXXXXXXXXXXX 60

Query: 61  ENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSC-KWLEHDCSVCLTQFEPESEINHL 120
               ES DF +     Y+EEFR+R P + F+ +  C K  +++CSVCL++F+ +SEIN L
Sbjct: 61  XXXSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHVFHRVCLEKWLDYWNITCPLCRTPL--MPEEETAS 149
            CGH+FH+ CLEKW+DYWNITCPLCRTPL  +PE+   S
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

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BLAST of Carg05161 vs. TAIR10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 0


Query: 10  SEGVLGVILVNTAISISIFKGIVRSILHVVGI--HLSTPSSSDSMENSPESIDFCLNPNG 69
           +E  L  + V T   +   + IV SI   +G+   L    +     + P  I    +P  
Sbjct: 8   TEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIPETRSPFS 67

Query: 70  GYIEEFRSRIPAILFDKV-RSCKWLEHDCSVCLTQFEPESEINHL-SCGHVFHRVCLEKW 129
             +   R  +P I F+++  S + L  +C+VCL +FE E EI  L +C H+FHR CL++W
Sbjct: 68  ALL--IREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRW 127

Query: 130 LDYWNITCPLCRTPLMPEE 145
           +D+   TCPLCRTP +P+E
Sbjct: 128 MDHDQKTCPLCRTPFVPDE 144

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BLAST of Carg05161 vs. TAIR10
Match: AT1G67856.1 (RING/U-box superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13
Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID 60
           MG+S  P  SEGV+ ++++NT +S+S+ K +VRS++             +          
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVV-------------NXXXXXXXXXX 60

Query: 61  FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEH-----DCSVCLTQFEPESEINHL-SCG 120
                      + R RI    F+ +   +   +     DC VCL  F+ E E++ L SC 
Sbjct: 61  XXXXXXXXXXXKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCK 120

Query: 121 HVFHRVCLEKWLDYWNITCPLCRTPL 141
           H FH  CL+KW    + TCPLCR+ L
Sbjct: 121 HYFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of Carg05161 vs. TAIR10
Match: AT2G01150.1 (RING-H2 finger protein 2B)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 94  DCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMP 143
           DC VCL++ +   E+  L C HVFH+ CLE WL + N  CPLCR+PL+P
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Carg05161 vs. TAIR10
Match: AT4G11370.1 (RING-H2 finger A1A)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-12
Identity = 41/146 (28.08%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 9   PSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENS-PESIDFCLNPNG 68
           P + +  + + +  + I    G  R I+  +  ++  P   D  E S P+     L+ + 
Sbjct: 4   PEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHALSTSA 63

Query: 69  GYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHL-SCGHVFHRVCLEKWL 128
               E    IP + F  + +    E  C+VCL+ FE + ++  L  CGHVFH  CL++W+
Sbjct: 64  SLANEL---IPVVRFSDLPTDP--EDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWI 123

Query: 129 -DYWNITCPLCRTPLMPEEETASCFW 152
            DY  + CP+CR   +P+E+     W
Sbjct: 124 VDYNKMKCPVCRHRFLPKEKYTQSDW 144

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BLAST of Carg05161 vs. Swiss-Prot
Match: sp|Q9SI09|XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 89/159 (55.97%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPS--------SSDSM 60
           MGLSSLP PSEG+L VILVNTA+SISI KGIVRS L +VGI LS PS             
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSXXXXXXXXXXXXX 60

Query: 61  ENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSC-KWLEHDCSVCLTQFEPESEINHL 120
               ES DF +     Y+EEFR+R P + F+ +  C K  +++CSVCL++F+ +SEIN L
Sbjct: 61  XXXSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHVFHRVCLEKWLDYWNITCPLCRTPL--MPEEETAS 149
            CGH+FH+ CLEKW+DYWNITCPLCRTPL  +PE+   S
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]

BLAST of Carg05161 vs. Swiss-Prot
Match: sp|Q9ZU51|RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 94  DCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMP 143
           DC VCL++ +   E+  L C HVFH+ CLE WL + N  CPLCR+PL+P
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Carg05161 vs. Swiss-Prot
Match: sp|Q9SUS4|RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.0e-11
Identity = 41/146 (28.08%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 9   PSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENS-PESIDFCLNPNG 68
           P + +  + + +  + I    G  R I+  +  ++  P   D  E S P+     L+ + 
Sbjct: 4   PEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHALSTSA 63

Query: 69  GYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHL-SCGHVFHRVCLEKWL 128
               E    IP + F  + +    E  C+VCL+ FE + ++  L  CGHVFH  CL++W+
Sbjct: 64  SLANEL---IPVVRFSDLPTDP--EDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWI 123

Query: 129 -DYWNITCPLCRTPLMPEEETASCFW 152
            DY  + CP+CR   +P+E+     W
Sbjct: 124 VDYNKMKCPVCRHRFLPKEKYTQSDW 144

[Close]

BLAST of Carg05161 vs. Swiss-Prot
Match: sp|Q9SUS5|RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 0


Query: 18  LVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENS-PESIDFCLNPNGGYIEEFRSR 77
           ++ T   I  F+ +V ++   +G+    PS  D  E S  +     L+ +     E    
Sbjct: 16  VLKTLYVIGFFRDMVDALCPYIGL----PSFLDHNETSRSDPTRLALSTSATLANEL--- 75

Query: 78  IPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHL-SCGHVFHRVCLEKWL-DYWNITCP 137
           IP + F  + +    E  C+VCL+ F  + +I  L  CGHVFH  CL++W+ D   ITCP
Sbjct: 76  IPVVRFSDLLTDP--EDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCP 135

Query: 138 LCRTPLMPEEETASCFW 152
           +CR   +PEE++    W
Sbjct: 136 ICRNRFLPEEKSTPFDW 143

[Close]

BLAST of Carg05161 vs. Swiss-Prot
Match: sp|Q9ZT50|RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 94  DCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMPEE 145
           DC VCL++ +   E+  L C HVFH+ CLE WL  +N TCPLCR+ L+ ++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of Carg05161 vs. TrEMBL
Match: tr|A0A0A0KAU4|A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 6.4e-78
Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLST----PSSSDSMENSP 60
           MGLSSLPAPSEGVLGVILVNTA+SISIFKGIVRSILHVVGIHLS+    PSS DSMEN+P
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHV 120
           ESI+F LNPNG YIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH+
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           FHRVCLEKWLDYWN+TCPLCRTPLMPEE+TASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]

BLAST of Carg05161 vs. TrEMBL
Match: tr|A0A1S3BIY9|A0A1S3BIY9_CUCME (probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103490418 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.2e-77
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLST-----PSSSDSMENS 60
           MGLSSLPAPSEGVLGVILVNTA+SISIFKGIVRSILHVVGIHLS+     PSS DSMEN+
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESI+F LNPNG YIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 VFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           +FH VCLEKWLDYWN+TCPLCRTPLMPEE+TASCFW
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156

[Close]

BLAST of Carg05161 vs. TrEMBL
Match: tr|A0A2P5ER22|A0A2P5ER22_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_161910 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.5e-61
Identity = 119/161 (73.91%), Postives = 133/161 (82.61%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHL----------STPSSSD 60
           MGLSSLPAPSEGVL V+LVNTA+S+SIFKG+VR++LHVVGI L          S PSS+D
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSLSIFKGLVRAVLHVVGIRLSFSSSPSSLSSPPSSAD 60

Query: 61  SMENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINH 120
             EN  ES +F  +P+  YIEEFRSRIPAI FD + SCK  EHDCSVCL+QFEPESEINH
Sbjct: 61  YTENHSESFEFSRSPSYTYIEEFRSRIPAIRFDSMCSCKEAEHDCSVCLSQFEPESEINH 120

Query: 121 LSCGHVFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           LSCGH+FHRVCLEKWLDYWNITCPLCRTPLMPEEET +CFW
Sbjct: 121 LSCGHLFHRVCLEKWLDYWNITCPLCRTPLMPEEET-TCFW 160

[Close]

BLAST of Carg05161 vs. TrEMBL
Match: tr|A0A061DMB3|A0A061DMB3_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_002456 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.5e-61
Identity = 118/152 (77.63%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSS-SDSMENSPESI 60
           MGLSSLPAPSEGVL ++LVNTA+SISI KGI+RSILH+VGIHLS+ SS SDS+EN  ES 
Sbjct: 1   MGLSSLPAPSEGVLCILLVNTALSISIVKGIIRSILHIVGIHLSSSSSASDSVENPSESF 60

Query: 61  DFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHR 120
           DF L+ +  YI+EFRSR PAI FD V SCK  EHDCSVCLTQFEPESEIN LSCGH+FH+
Sbjct: 61  DFHLSTSDSYIDEFRSRTPAIRFDAVCSCKRPEHDCSVCLTQFEPESEINRLSCGHLFHK 120

Query: 121 VCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           VCLEKWL YWN+TCPLCRTPL+PEEE ASCFW
Sbjct: 121 VCLEKWLKYWNVTCPLCRTPLLPEEE-ASCFW 151

[Close]

BLAST of Carg05161 vs. TrEMBL
Match: tr|F6HHR0|F6HHR0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0057g01330 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 7.1e-61
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLS-TPSSSDSMENSPESI 60
           MGLSSLPAPSEGVL V+LVNTA+SISIFKGIVR+ILHV+GIHLS TPSSSDS E + E  
Sbjct: 52  MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRAILHVIGIHLSATPSSSDSPEPTSEPF 111

Query: 61  DFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHR 120
           +F  NP+   +EEFRSR PAI FD V SCK  EHDC+VCLT+FEP+SEINHL CGH FH+
Sbjct: 112 EFRRNPSETCMEEFRSRNPAIRFDTVCSCKRPEHDCAVCLTRFEPDSEINHLPCGHFFHK 171

Query: 121 VCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           VCLEKWLDYWNITCPLCRTPLMPEEET SCFW
Sbjct: 172 VCLEKWLDYWNITCPLCRTPLMPEEET-SCFW 202

The following BLAST results are available for this feature:

BLAST of Carg05161 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947327.1	1.4e-84	100.00	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022947328.1...	[more]
XP_022971123.1	1.8e-84	99.34	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022971124.1 p...	[more]
XP_023534541.1	7.0e-84	98.68	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_004139989.1	9.7e-78	90.97	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN466...	[more]
XP_008448128.1	6.3e-77	89.74	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo]	[more]

BLAST of Carg05161 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04240.1	2.8e-42	55.97	RING/U-box superfamily protein	[more]
AT3G61460.1	1.7e-15	34.53	brassinosteroid-responsive RING-H2	[more]
AT1G67856.1	2.1e-13	30.82	RING/U-box superfamily protein	[more]
AT2G01150.1	1.3e-12	53.06	RING-H2 finger protein 2B	[more]
AT4G11370.1	3.9e-12	28.08	RING-H2 finger A1A	[more]

BLAST of Carg05161 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SI09\|XERIC_ARATH	5.0e-41	55.97	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
sp\|Q9ZU51\|RHA2B_ARATH	2.4e-11	53.06	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
sp\|Q9SUS4\|RHA1A_ARATH	7.0e-11	28.08	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
sp\|Q9SUS5\|RHA1B_ARATH	1.2e-10	31.39	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
sp\|Q9ZT50\|RHA2A_ARATH	2.0e-10	49.02	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]

BLAST of Carg05161 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAU4\|A0A0A0KAU4_CUCSA	6.4e-78	90.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G113550 PE=4 SV=1	[more]
tr\|A0A1S3BIY9\|A0A1S3BIY9_CUCME	4.2e-77	89.74	probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103490...	[more]
tr\|A0A2P5ER22\|A0A2P5ER22_9ROSA	2.5e-61	73.91	43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_161910 PE=...	[more]
tr\|A0A061DMB3\|A0A061DMB3_THECC	2.5e-61	77.63	RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_00245...	[more]
tr\|F6HHR0\|F6HHR0_VITVI	7.1e-61	78.29	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0057g01330 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05161-RA	Carg05161-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 95..136 e-value: 6.2E-6 score: 35.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 94..137 e-value: 2.3E-11 score: 43.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 95..137 score: 12.902
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 66..143 e-value: 3.2E-16 score: 60.7
None	No IPR available	PANTHER	PTHR14155:SF204	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..141
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..141
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 84..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05161	Cla015704	Watermelon (97103) v1	carwmB0809
Carg05161	Csa6G113550	Cucumber (Chinese Long) v2	carcuB0823
Carg05161	ClCG02G003020	Watermelon (Charleston Gray)	carwcgB0782
Carg05161	CSPI06G09350	Wild cucumber (PI 183967)	carcpiB0843
Carg05161	Cucsa.120170	Cucumber (Gy14) v1	carcgyB0919
Carg05161	CmaCh02G002410	Cucurbita maxima (Rimu)	carcmaB1124
Carg05161	CmaCh19G008400	Cucurbita maxima (Rimu)	carcmaB1120
Carg05161	CmoCh02G002420	Cucurbita moschata (Rifu)	carcmoB1094
Carg05161	CmoCh19G008560	Cucurbita moschata (Rifu)	carcmoB1091
Carg05161	Lsi11G013330	Bottle gourd (USVL1VR-Ls)	carlsiB741
Carg05161	Lsi10G000360	Bottle gourd (USVL1VR-Ls)	carlsiB739
Carg05161	Cp4.1LG05g13760	Cucurbita pepo (Zucchini)	carcpeB1139
Carg05161	CsGy6G009420	Cucumber (Gy14) v2	carcgybB0797
Carg05161	CsaV3_6G009740	Cucumber (Chinese Long) v3	carcucB0847
Carg05161	Cla97C02G029530	Watermelon (97103) v2	carwmbB0844
Carg05161	Bhi10G001001	Wax gourd	carwgoB0942

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05161	Carg04133	Silver-seed gourd	carcarB235

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05161	Melon (DHL92) v3.5.1	carmeB0799
Carg05161	Melon (DHL92) v3.6.1	carmedB0811
Carg05161	Silver-seed gourd	carcarB372
Carg05161	Cucurbita maxima (Rimu)	carcmaB1121
Carg05161	Cucurbita moschata (Rifu)	carcmoB1092
Carg05161	Cucurbita pepo (Zucchini)	carcpeB1133