CmoCh02G002420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G002420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein, putative
Location	Cmo_Chr02 : 1139058 .. 1139513 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA

mRNA sequence

ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA

Coding sequence (CDS)

ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA

Homology

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BLAST of CmoCh02G002420 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.7e-44
Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSM-----ENS 60
           MGLSSLP PSEG+L VILVNTA+SISI KGIVRS L +VGI LS  SSS S      ENS
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  P--ESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCK-WLEHDCSVCLTQFEPESEINHLS 120
              ES DF +     Y+EEFR+R P + F+ +  CK   +++CSVCL++F+ +SEIN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHVFHRVCLEKWLDYWNITCPLCRTPL--MPEEETAS 149
           CGH+FH+ CLEKW+DYWNITCPLCRTPL  +PE+   S
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

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BLAST of CmoCh02G002420 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 94  DCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMP 143
           DC VCL++ +   E+  L C HVFH+ CLE WL + N  CPLCR+PL+P
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

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BLAST of CmoCh02G002420 vs. Swiss-Prot
Match: RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-11
Identity = 41/146 (28.08%), Postives = 70/146 (47.95%), Query Frame = 1


Query: 9   PSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENS-PESIDFCLNPNG 68
           P + +  + + +  + I    G  R I+  +  ++  P   D  E S P+     L+ + 
Sbjct: 4   PEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHALSTSA 63

Query: 69  GYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHL-SCGHVFHRVCLEKWL 128
               E    IP + F  + +    E  C+VCL+ FE + ++  L  CGHVFH  CL++W+
Sbjct: 64  SLANEL---IPVVRFSDLPTDP--EDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWI 123

Query: 129 -DYWNITCPLCRTPLMPEEETASCFW 152
            DY  + CP+CR   +P+E+     W
Sbjct: 124 VDYNKMKCPVCRHRFLPKEKYTQSDW 144

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BLAST of CmoCh02G002420 vs. Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 1


Query: 18  LVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENS-PESIDFCLNPNGGYIEEFRSR 77
           ++ T   I  F+ +V ++   +G+    PS  D  E S  +     L+ +     E    
Sbjct: 16  VLKTLYVIGFFRDMVDALCPYIGL----PSFLDHNETSRSDPTRLALSTSATLANEL--- 75

Query: 78  IPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHL-SCGHVFHRVCLEKWL-DYWNITCP 137
           IP + F  + +    E  C+VCL+ F  + +I  L  CGHVFH  CL++W+ D   ITCP
Sbjct: 76  IPVVRFSDLLTDP--EDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCP 135

Query: 138 LCRTPLMPEEETASCFW 152
           +CR   +PEE++    W
Sbjct: 136 ICRNRFLPEEKSTPFDW 143

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BLAST of CmoCh02G002420 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1


Query: 94  DCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMPEE 145
           DC VCL++ +   E+  L C HVFH+ CLE WL  +N TCPLCR+ L+ ++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

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BLAST of CmoCh02G002420 vs. TrEMBL
Match: A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-78
Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLST----PSSSDSMENSP 60
           MGLSSLPAPSEGVLGVILVNTA+SISIFKGIVRSILHVVGIHLS+    PSS DSMEN+P
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHV 120
           ESI+F LNPNG YIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH+
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           FHRVCLEKWLDYWN+TCPLCRTPLMPEE+TASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]

BLAST of CmoCh02G002420 vs. TrEMBL
Match: A0A061DMB3_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-61
Identity = 118/152 (77.63%), Postives = 132/152 (86.84%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSS-SDSMENSPESI 60
           MGLSSLPAPSEGVL ++LVNTA+SISI KGI+RSILH+VGIHLS+ SS SDS+EN  ES 
Sbjct: 1   MGLSSLPAPSEGVLCILLVNTALSISIVKGIIRSILHIVGIHLSSSSSASDSVENPSESF 60

Query: 61  DFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHR 120
           DF L+ +  YI+EFRSR PAI FD V SCK  EHDCSVCLTQFEPESEIN LSCGH+FH+
Sbjct: 61  DFHLSTSDSYIDEFRSRTPAIRFDAVCSCKRPEHDCSVCLTQFEPESEINRLSCGHLFHK 120

Query: 121 VCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           VCLEKWL YWN+TCPLCRTPL+PEEE ASCFW
Sbjct: 121 VCLEKWLKYWNVTCPLCRTPLLPEEE-ASCFW 151

[Close]

BLAST of CmoCh02G002420 vs. TrEMBL
Match: A5ADW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037474 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.9e-61
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLS-TPSSSDSMENSPESI 60
           MGLSSLPAPSEGVL V+LVNTA+SISIFKGIVR+ILHV+GIHLS TPSSSDS E + E  
Sbjct: 73  MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRAILHVIGIHLSATPSSSDSPEPTSEPF 132

Query: 61  DFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHR 120
           +F  NP+   +EEFRSR PAI FD V SCK  EHDC+VCLT+FEP+SEINHL CGH FH+
Sbjct: 133 EFRRNPSETCMEEFRSRNPAIRFDTVCSCKRPEHDCAVCLTRFEPDSEINHLPCGHFFHK 192

Query: 121 VCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           VCLEKWLDYWNITCPLCRTPLMPEEET SCFW
Sbjct: 193 VCLEKWLDYWNITCPLCRTPLMPEEET-SCFW 223

[Close]

BLAST of CmoCh02G002420 vs. TrEMBL
Match: F6HHR0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g01330 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.9e-61
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLS-TPSSSDSMENSPESI 60
           MGLSSLPAPSEGVL V+LVNTA+SISIFKGIVR+ILHV+GIHLS TPSSSDS E + E  
Sbjct: 52  MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRAILHVIGIHLSATPSSSDSPEPTSEPF 111

Query: 61  DFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHR 120
           +F  NP+   +EEFRSR PAI FD V SCK  EHDC+VCLT+FEP+SEINHL CGH FH+
Sbjct: 112 EFRRNPSETCMEEFRSRNPAIRFDTVCSCKRPEHDCAVCLTRFEPDSEINHLPCGHFFHK 171

Query: 121 VCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           VCLEKWLDYWNITCPLCRTPLMPEEET SCFW
Sbjct: 172 VCLEKWLDYWNITCPLCRTPLMPEEET-SCFW 202

[Close]

BLAST of CmoCh02G002420 vs. TrEMBL
Match: C6TE74_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G223600 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.2e-59
Identity = 114/155 (73.55%), Postives = 128/155 (82.58%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLST-----PSSSDSMENS 60
           MGLSSLPAPSEGVL V+LVNT +SISIFKGIVR+ILH+VGIHLS+     PSS D    +
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSSTSPSSPDPSLTA 60

Query: 61  PESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PES +F L+P+  YIEEFRSR P + FD V  CK  EHDCSVCLTQFEPESEIN LSCGH
Sbjct: 61  PESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKQPEHDCSVCLTQFEPESEINRLSCGH 120

Query: 121 VFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCF 151
           +FH+VCLEKWLDYWNITCPLCRTPLMPE++T  CF
Sbjct: 121 LFHKVCLEKWLDYWNITCPLCRTPLMPEDDT-PCF 154

[Close]

BLAST of CmoCh02G002420 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 178.7 bits (452), Expect = 2.7e-45
Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSM-----ENS 60
           MGLSSLP PSEG+L VILVNTA+SISI KGIVRS L +VGI LS  SSS S      ENS
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  P--ESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCK-WLEHDCSVCLTQFEPESEINHLS 120
              ES DF +     Y+EEFR+R P + F+ +  CK   +++CSVCL++F+ +SEIN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHVFHRVCLEKWLDYWNITCPLCRTPL--MPEEETAS 149
           CGH+FH+ CLEKW+DYWNITCPLCRTPL  +PE+   S
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]

BLAST of CmoCh02G002420 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16
Identity = 47/146 (32.19%), Postives = 78/146 (53.42%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESID 60
           MG+S  P  SEGV+ ++++NT +S+S+ K +VRS++++V    +   + +  ++  +S  
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS-- 60

Query: 61  FCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEH-----DCSVCLTQFEPESEINHL-SCG 120
                      + R RI    F+ +   +   +     DC VCL  F+ E E++ L SC 
Sbjct: 61  -----------KRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCK 120

Query: 121 HVFHRVCLEKWLDYWNITCPLCRTPL 141
           H FH  CL+KW    + TCPLCR+ L
Sbjct: 121 HYFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of CmoCh02G002420 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 1


Query: 10  SEGVLGVILVNTAISISIFKGIVRSILHVVGIH--LSTPSSSDSMENSPESIDFCLNPNG 69
           +E  L  + V T   +   + IV SI   +G+   L    +     + P  I    +P  
Sbjct: 8   TEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIPETRSPFS 67

Query: 70  GYIEEFRSRIPAILFDKV-RSCKWLEHDCSVCLTQFEPESEINHL-SCGHVFHRVCLEKW 129
             +   R  +P I F+++  S + L  +C+VCL +FE E EI  L +C H+FHR CL++W
Sbjct: 68  ALL--IREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRW 127

Query: 130 LDYWNITCPLCRTPLMPEE 145
           +D+   TCPLCRTP +P+E
Sbjct: 128 MDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of CmoCh02G002420 vs. TAIR10
Match: AT3G43430.1 (AT3G43430.1 RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-13
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 1


Query: 13  VLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESIDFCLNPNGGYIEE 72
           ++  +L  TA+ I++ + I   IL        + SSS S  +S  SI          +  
Sbjct: 11  IISHVLYKTALIITVLRWIFAWILRY---RSRSSSSSSSQSSSSPSISSQTIKESLAVSA 70

Query: 73  FRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHL-SCGHVFHRVCLEKWLDYW-- 132
           FR  +        RS   +   C+VCL   E E EI  L +C HVFHR C+++WLDY   
Sbjct: 71  FRDAVE-------RSPAAINDMCAVCLGDLEDEDEIRELRNCTHVFHRDCIDRWLDYECC 130

Query: 133 ------NITCPLCRTPLMP 143
                 + TCPLCRTPL+P
Sbjct: 131 GGDDDNHRTCPLCRTPLLP 139

[Close]

BLAST of CmoCh02G002420 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 94  DCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMP 143
           DC VCL++ +   E+  L C HVFH+ CLE WL + N  CPLCR+PL+P
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of CmoCh02G002420 vs. NCBI nr
Match: gi|449444454|ref|XP_004139989.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 5.0e-78
Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLST----PSSSDSMENSP 60
           MGLSSLPAPSEGVLGVILVNTA+SISIFKGIVRSILHVVGIHLS+    PSS DSMEN+P
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHV 120
           ESI+F LNPNG YIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH+
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           FHRVCLEKWLDYWN+TCPLCRTPLMPEE+TASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]

BLAST of CmoCh02G002420 vs. NCBI nr
Match: gi|659094560|ref|XP_008448128.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 3.2e-77
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLST-----PSSSDSMENS 60
           MGLSSLPAPSEGVLGVILVNTA+SISIFKGIVRSILHVVGIHLS+     PSS DSMEN+
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESI+F LNPNG YIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 VFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           +FH VCLEKWLDYWN+TCPLCRTPLMPEE+TASCFW
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156

[Close]

BLAST of CmoCh02G002420 vs. NCBI nr
Match: gi|590712545|ref|XP_007049410.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 118/152 (77.63%), Postives = 132/152 (86.84%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSS-SDSMENSPESI 60
           MGLSSLPAPSEGVL ++LVNTA+SISI KGI+RSILH+VGIHLS+ SS SDS+EN  ES 
Sbjct: 1   MGLSSLPAPSEGVLCILLVNTALSISIVKGIIRSILHIVGIHLSSSSSASDSVENPSESF 60

Query: 61  DFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHR 120
           DF L+ +  YI+EFRSR PAI FD V SCK  EHDCSVCLTQFEPESEIN LSCGH+FH+
Sbjct: 61  DFHLSTSDSYIDEFRSRTPAIRFDAVCSCKRPEHDCSVCLTQFEPESEINRLSCGHLFHK 120

Query: 121 VCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           VCLEKWL YWN+TCPLCRTPL+PEEE ASCFW
Sbjct: 121 VCLEKWLKYWNVTCPLCRTPLLPEEE-ASCFW 151

[Close]

BLAST of CmoCh02G002420 vs. NCBI nr
Match: gi|147843500|emb|CAN82068.1| (hypothetical protein VITISV_037474 [Vitis vinifera])

HSP 1 Score: 242.3 bits (617), Expect = 5.6e-61
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLS-TPSSSDSMENSPESI 60
           MGLSSLPAPSEGVL V+LVNTA+SISIFKGIVR+ILHV+GIHLS TPSSSDS E + E  
Sbjct: 73  MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRAILHVIGIHLSATPSSSDSPEPTSEPF 132

Query: 61  DFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHR 120
           +F  NP+   +EEFRSR PAI FD V SCK  EHDC+VCLT+FEP+SEINHL CGH FH+
Sbjct: 133 EFRRNPSETCMEEFRSRNPAIRFDTVCSCKRPEHDCAVCLTRFEPDSEINHLPCGHFFHK 192

Query: 121 VCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           VCLEKWLDYWNITCPLCRTPLMPEEET SCFW
Sbjct: 193 VCLEKWLDYWNITCPLCRTPLMPEEET-SCFW 223

[Close]

BLAST of CmoCh02G002420 vs. NCBI nr
Match: gi|225447484|ref|XP_002264718.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Vitis vinifera])

HSP 1 Score: 242.3 bits (617), Expect = 5.6e-61
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLS-TPSSSDSMENSPESI 60
           MGLSSLPAPSEGVL V+LVNTA+SISIFKGIVR+ILHV+GIHLS TPSSSDS E + E  
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRAILHVIGIHLSATPSSSDSPEPTSEPF 60

Query: 61  DFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHR 120
           +F  NP+   +EEFRSR PAI FD V SCK  EHDC+VCLT+FEP+SEINHL CGH FH+
Sbjct: 61  EFRRNPSETCMEEFRSRNPAIRFDTVCSCKRPEHDCAVCLTRFEPDSEINHLPCGHFFHK 120

Query: 121 VCLEKWLDYWNITCPLCRTPLMPEEETASCFW 152
           VCLEKWLDYWNITCPLCRTPLMPEEET SCFW
Sbjct: 121 VCLEKWLDYWNITCPLCRTPLMPEEET-SCFW 151

The following BLAST results are available for this feature:

BLAST of CmoCh02G002420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XERIC_ARATH	4.7e-44	59.49	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RHA2B_ARATH	2.4e-11	53.06	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2	[more]
RHA1A_ARATH	6.9e-11	28.08	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2...	[more]
RHA1B_ARATH	1.2e-10	31.39	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1	[more]
RHA2A_ARATH	2.0e-10	49.02	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1	[more]

BLAST of CmoCh02G002420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU4_CUCSA	3.5e-78	90.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1	[more]
A0A061DMB3_THECC	1.3e-61	77.63	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 S...	[more]
A5ADW9_VITVI	3.9e-61	78.29	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037474 PE=4 SV=1	[more]
F6HHR0_VITVI	3.9e-61	78.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g01330 PE=4 SV=...	[more]
C6TE74_SOYBN	6.2e-59	73.55	Uncharacterized protein OS=Glycine max GN=GLYMA_02G223600 PE=2 SV=1	[more]

BLAST of CmoCh02G002420 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04240.1	2.7e-45	59.49	RING/U-box superfamily protein	[more]
AT1G67856.1	2.0e-16	32.19	RING/U-box superfamily protein	[more]
AT3G61460.1	1.7e-15	34.53	brassinosteroid-responsive RING-H2	[more]
AT3G43430.1	4.6e-13	34.53	RING/U-box superfamily protein	[more]
AT2G01150.1	1.3e-12	53.06	RING-H2 finger protein 2B	[more]

BLAST of CmoCh02G002420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444454\|ref\|XP_004139989.1\|	5.0e-78	90.97	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]	[more]
gi\|659094560\|ref\|XP_008448128.1\|	3.2e-77	89.74	PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo]	[more]
gi\|590712545\|ref\|XP_007049410.1\|	1.9e-61	77.63	RING/U-box superfamily protein, putative [Theobroma cacao]	[more]
gi\|147843500\|emb\|CAN82068.1\|	5.6e-61	78.29	hypothetical protein VITISV_037474 [Vitis vinifera]	[more]
gi\|225447484\|ref\|XP_002264718.1\|	5.6e-61	78.29	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0009687	abscisic acid metabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G002420.1	CmoCh02G002420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 94..137 score: 1.6
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 95..136 score: 6.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 95..137 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 93..140 score: 2.4
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 94..148 score: 2.3
None	No IPR available	PANTHER	PTHR14155:SF184	SUBFAMILY NOT NAMED	coord: 94..148 score: 2.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 84..143 score: 1.63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G002420	Cucsa.120170	Cucumber (Gy14) v1	cgycmoB0306
CmoCh02G002420	CmaCh02G002410	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G002420	Csa6G113550	Cucumber (Chinese Long) v2	cmocuB611
CmoCh02G002420	CSPI06G09350	Wild cucumber (PI 183967)	cmocpiB616
CmoCh02G002420	Lsi10G000360	Bottle gourd (USVL1VR-Ls)	cmolsiB534
CmoCh02G002420	Cp4.1LG05g13760	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G002420	CsaV3_6G009740	Cucumber (Chinese Long) v3	cmocucB0730
CmoCh02G002420	Bhi10G001001	Wax gourd	cmowgoB0748
CmoCh02G002420	CsGy6G009420	Cucumber (Gy14) v2	cgybcmoB790
CmoCh02G002420	Carg05161	Silver-seed gourd	carcmoB1094

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G002420	Cucurbita moschata (Rifu)	cmocmoB406
CmoCh02G002420	Cucurbita maxima (Rimu)	cmacmoB524
CmoCh02G002420	Cucurbita maxima (Rimu)	cmacmoB556
CmoCh02G002420	Melon (DHL92) v3.5.1	cmomeB523
CmoCh02G002420	Cucurbita pepo (Zucchini)	cmocpeB577
CmoCh02G002420	Melon (DHL92) v3.6.1	cmomedB601
CmoCh02G002420	Silver-seed gourd	carcmoB0474