Carg23639-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
BLAST of Carg23639-RA vs. NCBI nr
Match: XP_023512845.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60 Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0
BLAST of Carg23639-RA vs. NCBI nr
Match: XP_023512843.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60 Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0
BLAST of Carg23639-RA vs. NCBI nr
Match: XP_022944394.1 (mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata] >XP_022944395.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata] >XP_022944396.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata]) HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59 Identity = 150/155 (96.77%), Postives = 150/155 (96.77%), Query Frame = 0
BLAST of Carg23639-RA vs. NCBI nr
Match: XP_022986622.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita maxima] >XP_022986623.1 mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59 Identity = 146/155 (94.19%), Postives = 147/155 (94.84%), Query Frame = 0
BLAST of Carg23639-RA vs. NCBI nr
Match: XP_022986620.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59 Identity = 146/155 (94.19%), Postives = 147/155 (94.84%), Query Frame = 0
BLAST of Carg23639-RA vs. TAIR10
Match: AT1G11760.1 (MED32) HSP 1 Score: 175.6 bits (444), Expect = 2.3e-44 Identity = 100/159 (62.89%), Postives = 116/159 (72.96%), Query Frame = 0
BLAST of Carg23639-RA vs. Swiss-Prot
Match: sp|Q84VW5|MED32_ARATH (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 4.2e-43 Identity = 100/159 (62.89%), Postives = 116/159 (72.96%), Query Frame = 0
BLAST of Carg23639-RA vs. TrEMBL
Match: tr|A0A0A0LIN7|A0A0A0LIN7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 2.9e-57 Identity = 140/155 (90.32%), Postives = 142/155 (91.61%), Query Frame = 0
BLAST of Carg23639-RA vs. TrEMBL
Match: tr|A0A1S3C6T6|A0A1S3C6T6_CUCME (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 4.9e-57 Identity = 139/155 (89.68%), Postives = 141/155 (90.97%), Query Frame = 0
BLAST of Carg23639-RA vs. TrEMBL
Match: tr|A0A2I4GYT8|A0A2I4GYT8_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X3 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 5.6e-53 Identity = 121/155 (78.06%), Postives = 125/155 (80.65%), Query Frame = 0
BLAST of Carg23639-RA vs. TrEMBL
Match: tr|A0A2I4GYU4|A0A2I4GYU4_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X2 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 5.6e-53 Identity = 121/155 (78.06%), Postives = 125/155 (80.65%), Query Frame = 0
BLAST of Carg23639-RA vs. TrEMBL
Match: tr|A0A2I4GYU5|A0A2I4GYU5_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X1 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 5.6e-53 Identity = 121/155 (78.06%), Postives = 125/155 (80.65%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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