Carg26300 (gene) Silver-seed gourd

NameCarg26300
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA-directed RNA polymerase subunit
LocationCucurbita_argyrosperma_scaffold_399 : 21053 .. 25128 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTACATCCCTCAGCTGGTCTACCGTCTCCACATTAACATTTCATCCTCATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTTCATAATTTTACCCCGAAAGCTTATACTGAATTTTATAGGCATTATCTGTTTGTTTTTTTAGTTGCCGAGGAACTGTGCGAGAAAACAATCAAGTAAAAATATGTTTTTCTTTACATGGTCTGCTCGAATAGAAACTTCCCTAGTCTCGAACAATATATTATATTACAGCAAGATTGGAGAAAAGAATCTTGTTAAAATTCACAAACAGACATACAGAACATGTTTAAGGGTGAGAACCTTGTTAGAAATTTCATTTTTTAATGAACCAAAATATTCCTTCCATGAAACATACATAATACCTTTTCACTCGTGATAAACTCAAGATAATGGAAGATTGTACGTTGATTAGCGGGTAGATGAAAATATAACGTGAAAAGTAAATATGAAGCTGACAATTATACCTTCTTAATAACTGATAATCAGTTATCAGGTTTTCCTTACTTCTAATTTGAATCGACATGAATTGGTATATGTTCTGTGTTTTCATGGCAATATGATAACTACTTTCGTGTATCAACTCCTGGCTAAATCGTTTTAATTGGATCAATGCATTTGATATTTACATACGAGACCCAAAATGTTGAATCTTTCCAAGTACACTGACAACGACGGGAAGCTTTCAAAAACATTACAGCAGAAAGAAAAATGATATTCGAATTAGGTTTCAGTTTATTCTATGTGCCCTTTCTTATCTTTCTTTGTGGATTTGGGATTTGACTTTCTACGGCCTCTGCAAATAACTAGGGGAAGACTTGGTTAATTAATGCGCTCATCTTTCAGTTTTATTTATAGGAGGAGTAGTCAGTTGGACGTTAGGCAGTAGGGCCCTTGAGGTAATTCCGTTTTGATTGGTAGTAGGTGATGTGGAGGAAAAAGGTACTGTGTTTAGTAGTTTCATGTTGGGAGAGATTCAAGCCTCTCGCATTGCTATTTGATCCTCATTGGAATTAGCAAACTTGATTTCTGTTGGAAATTTTATCGACATTTGTTCACATAATATTTGTTAAGGTCTTCTTCCATTTGGTTACTTATTGGAGTCATGATTGTAATCTATATTCTTCTCTTTGATCTTTTCCATTTTGACTAGTATTCAATGCATAATATTATGACAATTGATATCAAAAGTAATGTCCAATGAGACCTAGTGGATGATCAGCAGCTTTTAACCGGTAAAAGCAGTGCTTTCCTCAATGTAGGGTTGGTTGCCAGTGTTCATGAGGTGGTCTCATTAGGCACGTTTCAATACAATATATGGCTCATGTTTTTGTTTTACAATCACACTTTGCTCCTATGATACAATATATGACTTCTATTTTTTGTCCCAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTATGCTTTGGTCTGGACTAAATAGTTTAGAGTTCTTGCTATGTTTCAAATATGCAGTTTGCATGCTTTATTTTGTTAGATCATGTAGAAATAAAGCAGATAAAGAAACAAATGACATTTTGTTCGTGGATGTTTCCAAAAGCTTAAAATACAAGAAACTTACGAAATGAATTGGACAACTCTAGCCCTAGAAAATAATTGGATAATAGGTACCCGACTAATATTGTGAGATCCCACCTCGGTTGGGGAGGAGAACTAAATATTCTTTATAAGAGTGTAGAAACCTTTTCCTAACAAACGCGTTTTAAAAATCTGGAGAGGAAACCCGGAAGAGAGTTCAAAGAGGACAATATATGTTAACCATGGGTTTGAGTTGTTACATGTATATATAGCCTTCAGATAAAAAGGATTACAAAGATGGGAAAGAAATTTGAGGTATCCCTCCTTTAACTCTCTCAATTCCAGTTCAAGAGAAACCGTGTAAAATCACATAAATAAATGGTAGCAATTGGCAGAAACCTCTGGCTTTGCACCTCAATCTTTGCCAAAATACTTGCCTGCCCAACTCCCTTCATAACGACCGGATCTAATGAACTTCCTAGCCAATGACTACATAATAACATTTGTTGCATGCCTCCTCAAGTTGCTGCCCATGTGATCAAGTAATAGCCTCCATTTAACAACTATCTCTTTCCATATAAGGGACAGACTTGAATTGTGATTGAGGTCATTAAGCAATTTCATATATACATTACTAATACTGAAGCTTCTCTTAATAATACTTTCGCTGTATGTCATGTGGTACTGGCGTGTCCATTGAAGATCTTTGTGGGCTATCATGCTCTTCTGCGACTGTTTGTACAGAAGAAATGACACAGTTGTAAATGGAACTTATCTTCTGGTGTTGCCAAAGTAGCATACTGGACTCTATGGCTGTGTTTTTGTGTTGCTCAACTATAATCTTGAGTAAGACGTCGTAAATGGAACCACATTTGAAATACGTTGCTGCATGATAGCACCTTGAGTAAGATGTGGTAACTCTGTGGCCCATGGCCTTGCTTTGGCAGTCCTCCACTTCGGCCCTTTCAATGGTTGTCTTATATCCTTTTGGATTCAGGATAGTTGTATCTGTTGGCCAGGCTCTTGGGTTCAATATTATATTCCCTTCACAAAAAATAAACAAAAGTTGAAAATTGCATCTGACCTAATTTTCTGTTTTCCATGACACTTTACCTTCATTGCCCAGCCATACAAAATCATCGCATGCTTTTTTCCTTTGCCCACCCACTTCTCATTTTGAGATGTTGTGCAGGCTACTTTGTTAGACCTCCAATCCAGAAGGTTTGTTCAAGGAAGAACAAAACTGGAATATGGTTGTTTCTAACGTTTAGAAGTATCAGCTTCAGTTAGTTAGTCGGTTTATTTTTTCTTTTAAATTTTTATTTGAGTATTTTGAATTAGCGAGTGATAACTTATTGAGTTAATTATATAACTTCTTAGTTTTGTTTGTATGCAGTGTTTTTGTAAATGCCGGGCATTGTTTTTTTTTTTTCCTTATGTTGTGTGGCTTCTTGAAAAGAATGTGGAGTGATTAATGATCCTCTCAAATGGGGACTCCCATCACACTTTTGATGTCAACAAGGCTTACATCTATTGTCTATAGAGATGTGATGCTTGCCCAGTTTAAAATTGTTCTTTATTTTAAACAATTATTTAAGCTATCTTCTGTCATTGAAGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGATGAATGTGTGCTATTGTTGATGCTGAGCTGTGGTCTGAATTTGTTTTGATCAAGAAAGATGGATGAATGATTAAATCAATTCTTCATGGTTCGGTGACCTACATGAAGGAAAAATGTACAGATTGTCAATGTAATAGATAGCATGTCCTGGACGCACTGCACAGTTTTTAAGAATGAGAAGAATCGATGATCATTGAAGTGAACCTTCACTTTATTGACTTGCAGCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCGTTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAATATAGGATTGAAAAGTTTAAACTGAT

mRNA sequence

ATTTTACATCCCTCAGCTGGTCTACCGTCTCCACATTAACATTTCATCCTCATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGATGAATGTGTGCTATTGTTGATGCTGAGCTGTGGTCTGAATTTGTTTTGATCAAGAAAGATGGATGAATGATTAAATCAATTCTTCATGGTTCGGTGACCTACATGAAGGAAAAATGTACAGATTGTCAATGTAATAGATAGCATGTCCTGGACGCACTGCACAGTTTTTAAGAATGAGAAGAATCGATGATCATTGAAGTGAACCTTCACTTTATTGACTTGCAGCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCGTTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAATATAGGATTGAAAAGTTTAAACTGAT

Coding sequence (CDS)

ATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGA

Protein sequence

MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKRGS
BLAST of Carg26300 vs. NCBI nr
Match: XP_022936820.1 (protein DCL homolog, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 403.3 bits (1035), Expect = 4.8e-109
Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVS A
Sbjct: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSGA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180

Query: 181 PSYAEMFIREHFKRGS 197
           PSYAEMFIREHFKRGS
Sbjct: 181 PSYAEMFIREHFKRGS 196

BLAST of Carg26300 vs. NCBI nr
Match: XP_023536078.1 (protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.4 bits (1017), Expect = 5.8e-107
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGL HRGLCSGVVQVTRRSC TATAASTPPDGSLTSAENTASVSSA
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVVQVTRRSCCTATAASTPPDGSLTSAENTASVSSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQPTK+QRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQPTKYQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180

Query: 181 PSYAEMFIREHFKRGS 197
           PSYAEMFIREHFKRGS
Sbjct: 181 PSYAEMFIREHFKRGS 196

BLAST of Carg26300 vs. NCBI nr
Match: XP_022977112.1 (protein DCL homolog, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 389.0 bits (998), Expect = 9.3e-105
Identity = 189/196 (96.43%), Postives = 193/196 (98.47%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGL HRGLCSGVVQVTRRSC TATAASTPPDGSLTSAENTASVSSA
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVVQVTRRSCCTATAASTPPDGSLTSAENTASVSSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQ TK+QRWCEPDYRKWKDQEDEILSDVEPV+SLTKEI+HSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQSTKYQRWCEPDYRKWKDQEDEILSDVEPVMSLTKEILHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFR+SRCLFVVRTDGGWIDFSYQKCLRAYIRSKY
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRYSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180

Query: 181 PSYAEMFIREHFKRGS 197
           PSYAEMFIREHFKRGS
Sbjct: 181 PSYAEMFIREHFKRGS 196

BLAST of Carg26300 vs. NCBI nr
Match: XP_008452601.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 332.0 bits (850), Expect = 1.3e-87
Identity = 156/196 (79.59%), Postives = 173/196 (88.27%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAAS L RGHPLLR GL  RGLC+GVVQVTRRSC +AT ASTP DG LT+ +N  S+ S+
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           S+P K+QRW EPDYRKWK+QE+EIL D+EP+I LTKEI+HS+RY DGERLT EDER VVD
Sbjct: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180
           RLLAHHPHAEDKIGCGLE IMVDRHPQFRHSRC FV+RTDGGWIDFSYQKCLRAYIR+KY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAEMFIREHFKRGS 197
           PS+AE FIREHFKRGS
Sbjct: 181 PSFAERFIREHFKRGS 196

BLAST of Carg26300 vs. NCBI nr
Match: XP_022135338.1 (protein DCL, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 324.7 bits (831), Expect = 2.1e-85
Identity = 157/196 (80.10%), Postives = 171/196 (87.24%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLR GL HRGLC+G+VQVTRRSC TATAA TPPDG+LTSAEN  SV S+
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAAPTPPDGNLTSAENITSVLSS 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           S P K+ RW            +E+L+D+EP+ISLTKEI+HSNRYVDGERLTS DERIVV+
Sbjct: 61  SDPPKYSRWXXXXXXXXXXXXEEMLNDIEPIISLTKEILHSNRYVDGERLTSVDERIVVN 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180
           RLLAHHPHAEDKIGCGLE IMVDRHPQFRHSRCLFV+RTDGGWIDFSYQKCLRAYIR+KY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAEMFIREHFKRGS 197
           PSYAE FIREHFKRGS
Sbjct: 181 PSYAERFIREHFKRGS 196

BLAST of Carg26300 vs. TAIR10
Match: AT3G46630.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 225.3 bits (573), Expect = 3.2e-59
Identity = 121/210 (57.62%), Postives = 150/210 (71.43%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFG-LCHR---GLCSGVVQVTRRSCFTATA----------ASTPPDG 60
           M + LLLR  PLLR G L HR   G+ +G +   RR    + A          + +P +G
Sbjct: 1   MTSLLLLRTLPLLRNGFLNHRHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEG 60

Query: 61  SLTSAENTASVSSASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVD 120
           S  +A N  S    +      R+ +PDYRKWK+ E EIL D+EP+  L KEI+HS+RY+D
Sbjct: 61  SGAAAMNVTSPVVDNS----WRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLD 120

Query: 121 GERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDF 180
           GERL  EDE+IV+++LL +HP+++DKIGCGL+FIMVDRHPQFRHSRCLFVVRTDGGWIDF
Sbjct: 121 GERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDF 180

Query: 181 SYQKCLRAYIRSKYPSYAEMFIREHFKRGS 197
           SYQKCLRAY+R KYPS+AE FIREHFKR S
Sbjct: 181 SYQKCLRAYVRDKYPSHAERFIREHFKRAS 206

BLAST of Carg26300 vs. TAIR10
Match: AT1G45230.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 79  DQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLE 138
           D ED+IL    P++   + I+HS +Y + +RL+ E ER +++ LL +HP  E KIGCG++
Sbjct: 99  DWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGID 158

Query: 139 FIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKR 195
           +IMV  HP F  SRC+F+VR DG  +DFSY KC++  I+ KYP YA+ FI  HF++
Sbjct: 159 YIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214

BLAST of Carg26300 vs. TAIR10
Match: AT2G40030.1 (nuclear RNA polymerase D1B)

HSP 1 Score: 118.2 bits (295), Expect = 5.5e-27
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0

Query: 80   QEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEF 139
            +E E+LSDVEPV+   ++I+H + Y DG+ ++ +D+  V++++L  HP  E K+G G++F
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794

Query: 140  IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKR 195
            I VD+H  F  SRC FVV TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

BLAST of Carg26300 vs. TAIR10
Match: AT1G63020.1 (nuclear RNA polymerase D1A)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-07
Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 87   DVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHP 146
            ++E +    K I+HS  Y   E L   DE + V  +L  HP++ +KIG G++ I V +  
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLNERDEGL-VKMVLQLHPNSVEKIGPGVKGIRVAK-S 1397

Query: 147  QFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKRGS 197
            +   S C  VVR DG + DFSY KC+    +   P     +  ++ K G+
Sbjct: 1398 KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443

BLAST of Carg26300 vs. Swiss-Prot
Match: sp|Q9C642|DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-30
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 79  DQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLE 138
           D ED+IL    P++   + I+HS +Y + +RL+ E ER +++ LL +HP  E KIGCG++
Sbjct: 99  DWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGID 158

Query: 139 FIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKR 195
           +IMV  HP F  SRC+F+VR DG  +DFSY KC++  I+ KYP YA+ FI  HF++
Sbjct: 159 YIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214

BLAST of Carg26300 vs. Swiss-Prot
Match: sp|Q42463|DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-29
Identity = 64/174 (36.78%), Postives = 96/174 (55.17%), Query Frame = 0

Query: 21  GLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSASQPTKFQRWCEPDYRKWKDQ 80
           G+ S   ++ R+   +    +T     L   E+   V   S           D   W D 
Sbjct: 56  GIRSDNAELLRKPVISTELETTSESEELVKEESDDEVGKKS----------GDGEGWVDW 115

Query: 81  EDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFI 140
           ED+IL D  P++   + I+HS +Y  G+RL+ + +R ++ RLL +HP  + KIG G+++I
Sbjct: 116 EDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYI 175

Query: 141 MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKR 195
            V  HP F +SRCLF+VR DG  +DFSY KC++  IR  YP YA+ FI  HF++
Sbjct: 176 TVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219

BLAST of Carg26300 vs. Swiss-Prot
Match: sp|Q5D869|NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0

Query: 80   QEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEF 139
            +E E+LSDVEPV+   ++I+H + Y DG+ ++ +D+  V++++L  HP  E K+G G++F
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794

Query: 140  IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKR 195
            I VD+H  F  SRC FVV TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

BLAST of Carg26300 vs. Swiss-Prot
Match: sp|Q9LQ02|NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-06
Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 87   DVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHP 146
            ++E +    K I+HS  Y   E L   DE + V  +L  HP++ +KIG G++ I V +  
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLNERDEGL-VKMVLQLHPNSVEKIGPGVKGIRVAK-S 1397

Query: 147  QFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKRGS 197
            +   S C  VVR DG + DFSY KC+    +   P     +  ++ K G+
Sbjct: 1398 KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443

BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A1S3BU88|A0A1S3BU88_CUCME (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 8.9e-88
Identity = 156/196 (79.59%), Postives = 173/196 (88.27%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAAS L RGHPLLR GL  RGLC+GVVQVTRRSC +AT ASTP DG LT+ +N  S+ S+
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           S+P K+QRW EPDYRKWK+QE+EIL D+EP+I LTKEI+HS+RY DGERLT EDER VVD
Sbjct: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180
           RLLAHHPHAEDKIGCGLE IMVDRHPQFRHSRC FV+RTDGGWIDFSYQKCLRAYIR+KY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAEMFIREHFKRGS 197
           PS+AE FIREHFKRGS
Sbjct: 181 PSFAERFIREHFKRGS 196

BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A0A0L0D6|A0A0A0L0D6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641650 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.7e-84
Identity = 152/196 (77.55%), Postives = 168/196 (85.71%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAAS L RGHPLLR GL  RG C+G+VQVT R C +ATAASTP DG LT+ +N  SV S 
Sbjct: 16  MAASFLFRGHPLLRLGLKRRGQCTGIVQVTCRFCCSATAASTPSDGDLTAGDNATSVVSV 75

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           S+P K+ RW EPDYRKWK+QE+EIL D+EP+I LTKEI+HS+RY DGERLT EDER VVD
Sbjct: 76  SEPPKYLRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 135

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180
           RLLAHHPHAEDKIGCGLE IMVDRHPQFR SRC FV+RTDGGWIDFSYQKCLRAYIR+KY
Sbjct: 136 RLLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 195

Query: 181 PSYAEMFIREHFKRGS 197
           PS+AE FIREHFKRGS
Sbjct: 196 PSFAERFIREHFKRGS 211

BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A1U7XY00|A0A1U7XY00_NICSY (protein DCL, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=LOC104238989 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 7.8e-68
Identity = 130/197 (65.99%), Postives = 154/197 (78.17%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPP-DGSLTSAENTASVSS 60
           MAA LLLRG PLLR   C++ L S    +     F+A++ S  P D + +  +NT +V  
Sbjct: 1   MAAPLLLRGFPLLRLRFCNQRLQSPSFVLLAPRLFSASSESGQPYDDAASIEDNTTTVLR 60

Query: 61  ASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVV 120
              P K+ RW +PDYRKWK++E +IL D+EPVI L KEIIHS+RY+DGERLT+EDE+IVV
Sbjct: 61  TKDPPKYPRWPDPDYRKWKERETQILKDIEPVIFLAKEIIHSDRYMDGERLTAEDEKIVV 120

Query: 121 DRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSK 180
           D+LLA+HPH EDKIGCGL+ IMVDRHPQFR SRCLFVVRTDGGWIDFSYQKCLR YIR K
Sbjct: 121 DKLLAYHPHCEDKIGCGLDSIMVDRHPQFRRSRCLFVVRTDGGWIDFSYQKCLRQYIRDK 180

Query: 181 YPSYAEMFIREHFKRGS 197
           YPSYAE FI+EHFKRGS
Sbjct: 181 YPSYAEKFIKEHFKRGS 197

BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A067KZT4|A0A067KZT4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16094 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 6.6e-67
Identity = 128/196 (65.31%), Postives = 157/196 (80.10%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAA LLLRG PLLR    H  L   ++   R+S + + A ST  D  +T+AE + +V SA
Sbjct: 1   MAAPLLLRGIPLLRLRHNHHRLAVRILSPLRQS-WCSAADSTRLDEEVTTAEKSTAVLSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
             P+ +  W +PDYRKWKD+EDEIL D+EP+  LTKEI+HS+RY+DGERLT++DE++VV+
Sbjct: 61  RDPSNYPIWDDPDYRKWKDKEDEILRDIEPITCLTKEILHSDRYLDGERLTADDEKLVVE 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKY 180
           +LL +HP++EDKIG GL+ IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIR KY
Sbjct: 121 KLLTYHPNSEDKIGSGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKY 180

Query: 181 PSYAEMFIREHFKRGS 197
           P+YAE FIREHFKRGS
Sbjct: 181 PTYAERFIREHFKRGS 195

BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A2R6RN49|A0A2R6RN49_ACTCH (Protein DCL like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04753 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 5.6e-66
Identity = 130/200 (65.00%), Postives = 157/200 (78.50%), Query Frame = 0

Query: 1   MAASLLLRGHPLLRFGL----CHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTAS 60
           MAA LLLRG PLLR  L     H  L +G+  +TRR  + A A ST PD  ++ ++ +A+
Sbjct: 1   MAAPLLLRGVPLLRLRLHQHQLHHRLAAGL--LTRRP-WCAAAESTRPDEDVSFSDQSAA 60

Query: 61  VSSASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDER 120
           V     P +  RW  PD+RKWKD+EDEIL D+EP+  LTKEI+HS+RY+DGERLT+EDE 
Sbjct: 61  VFGVKDPLQHPRWDNPDFRKWKDKEDEILRDIEPITFLTKEILHSDRYMDGERLTAEDEG 120

Query: 121 IVVDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYI 180
            VV++LLA+HPH+EDKIGCGL+ IMVDRHPQFR SRCLFVVRTDGGWIDFSYQKCLRAYI
Sbjct: 121 AVVEKLLAYHPHSEDKIGCGLDSIMVDRHPQFRRSRCLFVVRTDGGWIDFSYQKCLRAYI 180

Query: 181 RSKYPSYAEMFIREHFKRGS 197
           R KYPSYAE FI++HFKRG+
Sbjct: 181 RHKYPSYAERFIKDHFKRGT 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022936820.14.8e-10999.49protein DCL homolog, chloroplastic-like [Cucurbita moschata][more]
XP_023536078.15.8e-10798.47protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022977112.19.3e-10596.43protein DCL homolog, chloroplastic-like [Cucurbita maxima][more]
XP_008452601.11.3e-8779.59PREDICTED: protein DCL, chloroplastic [Cucumis melo][more]
XP_022135338.12.1e-8580.10protein DCL, chloroplastic isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT3G46630.13.2e-5957.62Protein of unknown function (DUF3223)[more]
AT1G45230.11.7e-3147.41Protein of unknown function (DUF3223)[more]
AT2G40030.15.5e-2746.09nuclear RNA polymerase D1B[more]
AT1G63020.11.7e-0732.73nuclear RNA polymerase D1A[more]
Match NameE-valueIdentityDescription
sp|Q9C642|DCL_ARATH3.0e-3047.41Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S... [more]
sp|Q42463|DCL_SOLLC4.3e-2936.78Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1[more]
sp|Q5D869|NRPE1_ARATH1.0e-2546.09DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1... [more]
sp|Q9LQ02|NRPD1_ARATH3.0e-0632.73DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BU88|A0A1S3BU88_CUCME8.9e-8879.59protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1[more]
tr|A0A0A0L0D6|A0A0A0L0D6_CUCSA2.7e-8477.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641650 PE=4 SV=1[more]
tr|A0A1U7XY00|A0A1U7XY00_NICSY7.8e-6865.99protein DCL, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=LOC104238989 PE=4 ... [more]
tr|A0A067KZT4|A0A067KZT4_JATCU6.6e-6765.31Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16094 PE=4 SV=1[more]
tr|A0A2R6RN49|A0A2R6RN49_ACTCH5.6e-6665.00Protein DCL like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26300-RACarg26300-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF11523DUF3223coord: 97..172
e-value: 1.4E-26
score: 93.0
NoneNo IPR availableGENE3DG3DSA:3.10.450.40coord: 82..178
e-value: 8.6E-24
score: 85.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..59
NoneNo IPR availablePANTHERPTHR33415FAMILY NOT NAMEDcoord: 1..195
NoneNo IPR availablePANTHERPTHR33415:SF4SUBFAMILY NOT NAMEDcoord: 1..195

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg26300Carg10621Silver-seed gourdcarcarB606
The following block(s) are covering this gene:
GeneOrganismBlock
Carg26300Cucurbita pepo (Zucchini)carcpeB1107