Carg10572-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGATGGACTACGACGCTACATGCTCATTTTGTACACGCTGTTGAGCTTCTTGGCGGCCATGAAAGTAATTCCACAACAAAACCAATAACCTTAAACACATCAAAACTTTGATTGTTCTATTAATATCCATTTTTGTATCTGTCTCAGGAGCTACACCAAAATCAGTATTGGAGCTTATGAATATCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGGTACTTTCATTGTTTTATCTTCCAAATTTGTCTATTTTATGCATAAATTCTCGTAATTTTATTTTTTTATTTTCTCAAAAGCTCTCGTATCAAACATAACGGGTTAAGCTTTTTCCCTCTTCTTTTAGCATATCTTCTCTCGTTCATCAAAAAAATTGCTCTCGATAGGATTAGTTTACTCATATTCTTGTATAAGAGTCAGGAGTTTGAAAGCACTCTGAGATTATAAGTAAGGTCAGGGATTACTAATTAGTCAAATTAGCCTATTCCTCTAGCCTATCATAGTGAGTCGATCGGGCTATCGGTTCCTGCATCTCCATGGGAGACCCTCCACGGCGTTCCTGTGGTTAGCAAGAAGGAGCTAATGATTCCGTTGTAGCTACTAAGCTATTGATAAGAGTTTTCGAGTCTAGTTTTTAGGTGGAGTTAATGATTCAGGTACATGTGGGTTGAAAGAGGTTGTTTTTGTCACATAATATTTATCTTATTCGCATAAAACATAACATTTTTGAAGATTCATTGATATGAGATAGGGGAGTAAAAGAGAGAGTACAAACGTGAAAGGACAAAAAAGCATCTAAAATTACATCAACTACAACGCAAGGCTGTTAAAAAAGAAAAAGGGTTTTGGTTTGTTGTGGATGCAGATGTTCCGAACAGTGAAGAACAGTGTGAAGAAGGGAACAGGTAATAAATAAAAACACTGTCTGTTCTTTAATGCAAACACTGTTCTTCTTCCTCACTTCTTCAGATCTGAAAATTAAAAAAAGCTTCATGTTTTTTTGTTGCAGACGATTATGGAAGGCCTGAGATCGAAGCAGATGGGGTTTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTTATCTCTTCAAAAATCTAACTTTCACACACTCAAACGGTGA ATGAGATGGACTACGACGCTACATGCTCATTTTGTACACGCTGTTGAGCTTCTTGGCGGCCATGAAACCTATCATAGTGAGTCGATCGGGCTATCGGTTCCTGCATCTCCATGGGAGACCCTCCACGGCGTTCCTGTGATGTTCCGAACAGTGAAGAACAGTGTGAAGAAGGGAACAGACGATTATGGAAGGCCTGAGATCGAAGCAGATGGGGTTTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTTATCTCTTCAAAAATCTAACTTTCACACACTCAAACGGTGA ATGAGATGGACTACGACGCTACATGCTCATTTTGTACACGCTGTTGAGCTTCTTGGCGGCCATGAAACCTATCATAGTGAGTCGATCGGGCTATCGGTTCCTGCATCTCCATGGGAGACCCTCCACGGCGTTCCTGTGATGTTCCGAACAGTGAAGAACAGTGTGAAGAAGGGAACAGACGATTATGGAAGGCCTGAGATCGAAGCAGATGGGGTTTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTTATCTCTTCAAAAATCTAACTTTCACACACTCAAACGGTGA MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLHGVPVMFRTVKNSVKKGTDDYGRPEIEADGVLSSSSSSSSSSSSLSLQKSNFHTLKR
BLAST of Carg10572-RA vs. NCBI nr
Match: XP_022941100.1 (probable transcription factor KAN4 [Cucurbita moschata]) HSP 1 Score: 105.9 bits (263), Expect = 7.8e-20 Identity = 75/103 (72.82%), Postives = 80/103 (77.67%), Query Frame = 0
BLAST of Carg10572-RA vs. NCBI nr
Match: XP_023525472.1 (probable transcription factor KAN4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 102.4 bits (254), Expect = 8.7e-19 Identity = 72/101 (71.29%), Postives = 79/101 (78.22%), Query Frame = 0
BLAST of Carg10572-RA vs. NCBI nr
Match: XP_022982284.1 (probable transcription factor KAN4 [Cucurbita maxima]) HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17 Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 0
BLAST of Carg10572-RA vs. NCBI nr
Match: XP_008454673.1 (PREDICTED: probable transcription factor KAN4 [Cucumis melo]) HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12 Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0
BLAST of Carg10572-RA vs. NCBI nr
Match: XP_011652394.1 (PREDICTED: probable transcription factor KAN4 [Cucumis sativus] >KGN59904.1 hypothetical protein Csa_3G852530 [Cucumis sativus]) HSP 1 Score: 80.1 bits (196), Expect = 4.6e-12 Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0
BLAST of Carg10572-RA vs. TAIR10
Match: AT4G17695.1 (Homeodomain-like superfamily protein) HSP 1 Score: 55.8 bits (133), Expect = 1.7e-08 Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of Carg10572-RA vs. TAIR10
Match: AT5G42630.1 (Homeodomain-like superfamily protein) HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08 Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0
BLAST of Carg10572-RA vs. TAIR10
Match: AT1G32240.1 (Homeodomain-like superfamily protein) HSP 1 Score: 52.0 bits (123), Expect = 2.4e-07 Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 0
BLAST of Carg10572-RA vs. TAIR10
Match: AT5G16560.1 (Homeodomain-like superfamily protein) HSP 1 Score: 50.8 bits (120), Expect = 5.4e-07 Identity = 30/70 (42.86%), Postives = 37/70 (52.86%), Query Frame = 0
BLAST of Carg10572-RA vs. Swiss-Prot
Match: sp|Q941I2|KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.0e-07 Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of Carg10572-RA vs. Swiss-Prot
Match: sp|Q9FJV5|KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 4.0e-07 Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0
BLAST of Carg10572-RA vs. Swiss-Prot
Match: sp|Q9C616|KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 4.4e-06 Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 0
BLAST of Carg10572-RA vs. Swiss-Prot
Match: sp|Q93WJ9|KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 9.8e-06 Identity = 30/70 (42.86%), Postives = 37/70 (52.86%), Query Frame = 0
BLAST of Carg10572-RA vs. Swiss-Prot
Match: sp|Q0J235|ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2) HSP 1 Score: 50.1 bits (118), Expect = 1.7e-05 Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 0
BLAST of Carg10572-RA vs. TrEMBL
Match: tr|A0A1S3C0D9|A0A1S3C0D9_CUCME (probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103495027 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12 Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0
BLAST of Carg10572-RA vs. TrEMBL
Match: tr|A0A0A0LFY8|A0A0A0LFY8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852530 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12 Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0
BLAST of Carg10572-RA vs. TrEMBL
Match: tr|A0A0F6QEM6|A0A0F6QEM6_9ROSA (Aberrant testa shape OS=Prunus incisa OX=137206 GN=ATS PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06 Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 0
BLAST of Carg10572-RA vs. TrEMBL
Match: tr|A0A251RA19|A0A251RA19_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G387800 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06 Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0
BLAST of Carg10572-RA vs. TrEMBL
Match: tr|A0A0F6T2S1|A0A0F6T2S1_PRUAR (Aberrant testa shape OS=Prunus armeniaca OX=36596 GN=ATS PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06 Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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