Carg10572 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10572
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor
Location	Cucurbita_argyrosperma_scaffold_031 : 28776 .. 29912 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATGGACTACGACGCTACATGCTCATTTTGTACACGCTGTTGAGCTTCTTGGCGGCCATGAAAGTAATTCCACAACAAAACCAATAACCTTAAACACATCAAAACTTTGATTGTTCTATTAATATCCATTTTTGTATCTGTCTCAGGAGCTACACCAAAATCAGTATTGGAGCTTATGAATATCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGGTACTTTCATTGTTTTATCTTCCAAATTTGTCTATTTTATGCATAAATTCTCGTAATTTTATTTTTTTATTTTCTCAAAAGCTCTCGTATCAAACATAACGGGTTAAGCTTTTTCCCTCTTCTTTTAGCATATCTTCTCTCGTTCATCAAAAAAATTGCTCTCGATAGGATTAGTTTACTCATATTCTTGTATAAGAGTCAGGAGTTTGAAAGCACTCTGAGATTATAAGTAAGGTCAGGGATTACTAATTAGTCAAATTAGCCTATTCCTCTAGCCTATCATAGTGAGTCGATCGGGCTATCGGTTCCTGCATCTCCATGGGAGACCCTCCACGGCGTTCCTGTGGTTAGCAAGAAGGAGCTAATGATTCCGTTGTAGCTACTAAGCTATTGATAAGAGTTTTCGAGTCTAGTTTTTAGGTGGAGTTAATGATTCAGGTACATGTGGGTTGAAAGAGGTTGTTTTTGTCACATAATATTTATCTTATTCGCATAAAACATAACATTTTTGAAGATTCATTGATATGAGATAGGGGAGTAAAAGAGAGAGTACAAACGTGAAAGGACAAAAAAGCATCTAAAATTACATCAACTACAACGCAAGGCTGTTAAAAAAGAAAAAGGGTTTTGGTTTGTTGTGGATGCAGATGTTCCGAACAGTGAAGAACAGTGTGAAGAAGGGAACAGGTAATAAATAAAAACACTGTCTGTTCTTTAATGCAAACACTGTTCTTCTTCCTCACTTCTTCAGATCTGAAAATTAAAAAAAGCTTCATGTTTTTTTGTTGCAGACGATTATGGAAGGCCTGAGATCGAAGCAGATGGGGTTTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTTATCTCTTCAAAAATCTAACTTTCACACACTCAAACGGTGA

mRNA sequence

ATGAGATGGACTACGACGCTACATGCTCATTTTGTACACGCTGTTGAGCTTCTTGGCGGCCATGAAACCTATCATAGTGAGTCGATCGGGCTATCGGTTCCTGCATCTCCATGGGAGACCCTCCACGGCGTTCCTGTGATGTTCCGAACAGTGAAGAACAGTGTGAAGAAGGGAACAGACGATTATGGAAGGCCTGAGATCGAAGCAGATGGGGTTTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTTATCTCTTCAAAAATCTAACTTTCACACACTCAAACGGTGA

Coding sequence (CDS)

ATGAGATGGACTACGACGCTACATGCTCATTTTGTACACGCTGTTGAGCTTCTTGGCGGCCATGAAACCTATCATAGTGAGTCGATCGGGCTATCGGTTCCTGCATCTCCATGGGAGACCCTCCACGGCGTTCCTGTGATGTTCCGAACAGTGAAGAACAGTGTGAAGAAGGGAACAGACGATTATGGAAGGCCTGAGATCGAAGCAGATGGGGTTTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTTATCTCTTCAAAAATCTAACTTTCACACACTCAAACGGTGA

Protein sequence

MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLHGVPVMFRTVKNSVKKGTDDYGRPEIEADGVLSSSSSSSSSSSSLSLQKSNFHTLKR

Homology

[Close]

BLAST of Carg10572 vs. NCBI nr
Match: XP_022941100.1 (probable transcription factor KAN4 [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 7.8e-20
Identity = 75/103 (72.82%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAVELLGGHE    +S+   ++V       +     MFRTVKNSVKKG
Sbjct: 76  MRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMFRTVKNSVKKG 135

Query: 61  TDDYGRPEIEADGVLS---XXXXXXXXXXXXXXQKSNFHTLKR 99
           TDDYGRPEIEADGVLS   XXXXXXXXXXXXXX KSNFHTLKR
Sbjct: 136 TDDYGRPEIEADGVLSXXXXXXXXXXXXXXXXXXKSNFHTLKR 178

[Close]

BLAST of Carg10572 vs. NCBI nr
Match: XP_023525472.1 (probable transcription factor KAN4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.4 bits (254), Expect = 8.7e-19
Identity = 72/101 (71.29%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAV+LLGGHE    +S+   ++V       +     MFRTVKNSVKKG
Sbjct: 76  MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMFRTVKNSVKKG 135

Query: 61  TDDYGRPEIEADGVLS--XXXXXXXXXXXXXXQKSNFHTLK 98
           TDDYGRPEIEADGVLS  XXXXXXXXXXXXXX KSNFHT+K
Sbjct: 136 TDDYGRPEIEADGVLSXXXXXXXXXXXXXXXXXKSNFHTVK 176

[Close]

BLAST of Carg10572 vs. NCBI nr
Match: XP_022982284.1 (probable transcription factor KAN4 [Cucurbita maxima])

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAVELLGGHE    +S+   ++V       +     MFRTVKNSVKKG
Sbjct: 87  MRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMFRTVKNSVKKG 146

Query: 61  TDDYGRPEIEADGVLS 75
           TDDYGRPEIEADGVLS
Sbjct: 147 TDDYGRPEIEADGVLS 162

[Close]

BLAST of Carg10572 vs. NCBI nr
Match: XP_008454673.1 (PREDICTED: probable transcription factor KAN4 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAVELLGGHE    +S+   ++V       +     M+RTVKN+VK+ 
Sbjct: 102 MRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKET 161

Query: 61  TDDYGRPEIEADGVL 74
            DD GRPE+E DG++
Sbjct: 162 ADDCGRPEVEGDGMV 176

[Close]

BLAST of Carg10572 vs. NCBI nr
Match: XP_011652394.1 (PREDICTED: probable transcription factor KAN4 [Cucumis sativus] >KGN59904.1 hypothetical protein Csa_3G852530 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 4.6e-12
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAVELLGGHE    +S+   ++V       +     M+RTVKN+VK+ 
Sbjct: 104 MRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKET 163

Query: 61  TDDYGRPEIEADGVL 74
            DD GRPE+E DG++
Sbjct: 164 ADDCGRPEVEEDGMV 178

[Close]

BLAST of Carg10572 vs. TAIR10
Match: AT4G17695.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-08
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLH--GVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAV+LLGGHE    +S+   +        H      M+RT+K S +K 
Sbjct: 167 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK-STEKP 226

Query: 61  TDDYGRPEIE 69
           T   G+ + E
Sbjct: 227 TTSSGQSDCE 235

[Close]

BLAST of Carg10572 vs. TAIR10
Match: AT5G42630.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWT+TLHAHFVHAV+LLGGHE    +S+   ++V       +     M+RTVK    KG
Sbjct: 108 MRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK-CTDKG 167

Query: 61  TDDYGRPEIEAD 71
           +   G+ E EA+
Sbjct: 168 SPGEGKVEKEAE 178

[Close]

BLAST of Carg10572 vs. TAIR10
Match: AT1G32240.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.4e-07
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLH--GVPVMFRTVKNSVKKG 60
           MRWTTTLHA FVHAVELLGGHE    +S+   +        H      M+RTVK + K  
Sbjct: 216 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAA 275

Query: 61  TDDYGRPEIEADG 72
               G+ ++  +G
Sbjct: 276 ASS-GQSDVYENG 287

[Close]

BLAST of Carg10572 vs. TAIR10
Match: AT5G16560.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 5.4e-07
Identity = 30/70 (42.86%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLH--GVPVMFRTVKNSVKKG 60
           MRWT++LHA FVHAVELLGGHE    +S+   +        H      M+RTVK + K  
Sbjct: 222 MRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPA 281

Query: 61  TDDYGRPEIE 69
               G  E E
Sbjct: 282 ASSDGSGEEE 291

[Close]

BLAST of Carg10572 vs. Swiss-Prot
Match: sp|Q941I2|KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-07
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLH--GVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAV+LLGGHE    +S+   +        H      M+RT+K S +K 
Sbjct: 167 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK-STEKP 226

Query: 61  TDDYGRPEIE 69
           T   G+ + E
Sbjct: 227 TTSSGQSDCE 235

[Close]

BLAST of Carg10572 vs. Swiss-Prot
Match: sp|Q9FJV5|KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-07
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWT+TLHAHFVHAV+LLGGHE    +S+   ++V       +     M+RTVK    KG
Sbjct: 108 MRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK-CTDKG 167

Query: 61  TDDYGRPEIEAD 71
           +   G+ E EA+
Sbjct: 168 SPGEGKVEKEAE 178

[Close]

BLAST of Carg10572 vs. Swiss-Prot
Match: sp|Q9C616|KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-06
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLH--GVPVMFRTVKNSVKKG 60
           MRWTTTLHA FVHAVELLGGHE    +S+   +        H      M+RTVK + K  
Sbjct: 216 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAA 275

Query: 61  TDDYGRPEIEADG 72
               G+ ++  +G
Sbjct: 276 ASS-GQSDVYENG 287

[Close]

BLAST of Carg10572 vs. Swiss-Prot
Match: sp|Q93WJ9|KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.8e-06
Identity = 30/70 (42.86%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLH--GVPVMFRTVKNSVKKG 60
           MRWT++LHA FVHAVELLGGHE    +S+   +        H      M+RTVK + K  
Sbjct: 222 MRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPA 281

Query: 61  TDDYGRPEIE 69
               G  E E
Sbjct: 282 ASSDGSGEEE 291

[Close]

BLAST of Carg10572 vs. Swiss-Prot
Match: sp|Q0J235|ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-05
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESIGLSVPASPWETLH--GVPVMFRTVKNSVK 57
           MRWT+TLHA FVHAVELLGGHE    +S+   +        H      M+RTVK++ K
Sbjct: 327 MRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

[Close]

BLAST of Carg10572 vs. TrEMBL
Match: tr|A0A1S3C0D9|A0A1S3C0D9_CUCME (probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103495027 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAVELLGGHE    +S+   ++V       +     M+RTVKN+VK+ 
Sbjct: 102 MRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKET 161

Query: 61  TDDYGRPEIEADGVL 74
            DD GRPE+E DG++
Sbjct: 162 ADDCGRPEVEGDGMV 176

[Close]

BLAST of Carg10572 vs. TrEMBL
Match: tr|A0A0A0LFY8|A0A0A0LFY8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852530 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAVELLGGHE    +S+   ++V       +     M+RTVKN+VK+ 
Sbjct: 104 MRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKET 163

Query: 61  TDDYGRPEIEADGVL 74
            DD GRPE+E DG++
Sbjct: 164 ADDCGRPEVEEDGMV 178

[Close]

BLAST of Carg10572 vs. TrEMBL
Match: tr|A0A0F6QEM6|A0A0F6QEM6_9ROSA (Aberrant testa shape OS=Prunus incisa OX=137206 GN=ATS PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAV+LLGGHE    +S+   ++V       +     M+RTVK++  KG
Sbjct: 140 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDNKG 199

Query: 61  TDDYGRPEI 68
           T   GR ++
Sbjct: 200 TGHEGRTDM 208

[Close]

BLAST of Carg10572 vs. TrEMBL
Match: tr|A0A251RA19|A0A251RA19_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G387800 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAV+LLGGHE    +S+   ++V       +     M+RTVK++  KG
Sbjct: 143 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDNKG 202

Query: 61  TDDYGRPEI 68
           T   G+ ++
Sbjct: 203 TGHEGQTDM 211

[Close]

BLAST of Carg10572 vs. TrEMBL
Match: tr|A0A0F6T2S1|A0A0F6T2S1_PRUAR (Aberrant testa shape OS=Prunus armeniaca OX=36596 GN=ATS PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MRWTTTLHAHFVHAVELLGGHETYHSESI--GLSVPASPWETLHGVPVMFRTVKNSVKKG 60
           MRWTTTLHAHFVHAV+LLGGHE    +S+   ++V       +     M+RTVK++  KG
Sbjct: 140 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDNKG 199

Query: 61  TDDYGRPEI 68
           T   G+ ++
Sbjct: 200 TGHEGQTDM 208

The following BLAST results are available for this feature:

BLAST of Carg10572 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941100.1	7.8e-20	72.82	probable transcription factor KAN4 [Cucurbita moschata]	[more]
XP_023525472.1	8.7e-19	71.29	probable transcription factor KAN4 [Cucurbita pepo subsp. pepo]	[more]
XP_022982284.1	1.3e-17	68.42	probable transcription factor KAN4 [Cucurbita maxima]	[more]
XP_008454673.1	3.5e-12	54.67	PREDICTED: probable transcription factor KAN4 [Cucumis melo]	[more]
XP_011652394.1	4.6e-12	54.67	PREDICTED: probable transcription factor KAN4 [Cucumis sativus] >KGN59904.1 hypo...	[more]

BLAST of Carg10572 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17695.1	1.7e-08	45.71	Homeodomain-like superfamily protein	[more]
AT5G42630.1	2.2e-08	45.83	Homeodomain-like superfamily protein	[more]
AT1G32240.1	2.4e-07	42.47	Homeodomain-like superfamily protein	[more]
AT5G16560.1	5.4e-07	42.86	Homeodomain-like superfamily protein	[more]

BLAST of Carg10572 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q941I2\|KAN3_ARATH	3.0e-07	45.71	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]
sp\|Q9FJV5\|KAN4_ARATH	4.0e-07	45.83	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
sp\|Q9C616\|KAN2_ARATH	4.4e-06	42.47	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
sp\|Q93WJ9\|KAN1_ARATH	9.8e-06	42.86	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]
sp\|Q0J235\|ROLL9_ORYSJ	1.7e-05	48.28	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]

BLAST of Carg10572 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0D9\|A0A1S3C0D9_CUCME	2.3e-12	54.67	probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103495027 PE=4 ...	[more]
tr\|A0A0A0LFY8\|A0A0A0LFY8_CUCSA	3.0e-12	54.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852530 PE=4 SV=1	[more]
tr\|A0A0F6QEM6\|A0A0F6QEM6_9ROSA	1.5e-06	47.83	Aberrant testa shape OS=Prunus incisa OX=137206 GN=ATS PE=4 SV=1	[more]
tr\|A0A251RA19\|A0A251RA19_PRUPE	4.3e-06	46.38	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G387800 PE=4 SV=1	[more]
tr\|A0A0F6T2S1\|A0A0F6T2S1_PRUAR	4.3e-06	46.38	Aberrant testa shape OS=Prunus armeniaca OX=36596 GN=ATS PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10572-RA	Carg10572-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..98
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 1..23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10572	Cla97C05G101050	Watermelon (97103) v2	carwmbB0807
Carg10572	Bhi04G000271	Wax gourd	carwgoB0902

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10572	Carg08748	Silver-seed gourd	carcarB124

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10572	Cucurbita moschata (Rifu)	carcmoB1044