Carg07435-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTTCTATCGTAGAGATTCTATTCCCATATATGTAAGCATCCCTTCTCTTTCTTTCTCTCTTTCTCTCATGAATTTAATTTTACTCATATGATGTTCATAAGTTCTTGCCTGCAATGTGTTTGTTCATTTGCCAATGATGGTGGAAGTTGTTTGAAGGTTGCTGCCACTGTCTCTTTTTTTTGTGCTTTTTCGTTAGTTTTAGATTTTTCTTGATCTGGATTGTTGTTTCCTTGAATTCATTTGGTTTTGTTAGATTTCTGCCGGAACTTGACGAAGCTAATATATACGTATTACGAATTATTAGTGCAAACGTTTGAATCAGTTTAGAGGTCTTGAGAACTTCGTTTTTGAGTCGCAAGAACTAAATGTTTGAAATGAAGCTAAATATTACTGTTCTAGCTGGAGCACTGGTGCTCAATCCTCTTATTATGCCCATAGGTCTGTTCCTACTTATTATCGAGGAAGGCTTTGCCTATTCCAAGGCCAATCTCTAGAGATCATAATTAACAATCCAAACCCACTGCTATAAGATATTGTCTCTTTGGGCTTTCTCTTTCGAGCTTCCCTTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGGTTTCTAGACCCTTATAAAGAATGTTTCGTTCTTCTCCCCAACCGATGTGAGATCTCACAATCCACAACCCCGAAGGGGTGGACACGAGGCGGTGTGCCAGGAAAGACACTGGGACCCGAAAGGGGGTGGATTGAGGGGTCTCACATCAATTGGAGTAGGGAACGAGTGCCAGCTAGGATGCGGAGTCTCGAAGGGGGGCGGATTGTGAGATTCCACAGCAGTTGAGGAGGAGAACGAAGTATTCTTTATAAGGATGTGGAAATCTCTCCCTAGTAGACGCATTTTAAAAACCTCGAGGAAAATCCCGAAAGGAAAAGTCCAAAGAGGACAATATCTACTAGCGGTGAGCTTGGACTGTTACAAATGATATCAGAGCTAGACACCAAGCGGTGTGCCAGCGAGGACGCTAGGCCCCAAGGGGTGGATTGTGAAATCTCGGATAGAGGGGGAAACAAAACATTCCTTATAAGGGTGTAGAACCTCTCCCTAATAAACGTGTGTTAAAACCTTGAGGGGAAGCCTGGAAGGAAAAGCTCAAAGAGGACAATATCTACTAGCGGTGGATTTGGGCTGGTATGTCATTGATCTAAATTTAGAAAACAGCAAGTATTTCAATTTGTACTTTTTTCACCTAGGAATTTGAACTCAAGACTTCGGAGGATATCTCCAAACATCCCAATTCCGAAGCCCTTACCAGTTTCCCCACCACCCTTAGGGACGCAAATTCCAAAAATTTCATATTGTCTTTTCTTTTCTGCTCTTTATCTTTGAAGTTATATTATGCTGAGAAACAATCTGAGTCCTCATGAAAGCTGGTCACTGCAGCAAATAAAATCACCTGCACAATTGTAATTGTTGTTTGGCTTATTTGTTTTATTTTATTAACATTCACACCAATTTCTACTGGATCATTGAAGAATGGGGGATCATTTTGTGCTGTTGGTGGATCGGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGATAAAAACATAATTCTTCATCCTATGGCCTCAACAACTGCAGATAATATGATATCTTCCATAGATATAGATATTGAATCCATATCACCTTCAACTAAACTTGTTGAGTGCAGAATTTGTCATGATGAGGATGATGAATCAAATATGGAAACACCCTGCTCTTGCCGTGGCAGCTTGAAGGTTAGATTTAGTTTAGTCAATACCAACTGGTTTCACTTATAAATAACTCAGATAGCTATTGTTTGAATCCCCCTTTTAAAACTTTATGGCTGACTAAACTGGTTTCAACAATGTTTCGAGAAAATTGTAGAACTAGATTTGTGGCCGTTAAGAATGAGAAACAAAAGTGGGATTGAATCAAATTTCATAATAATGGCTCAGATCGGGCATCCTGTGCTATTCTTGTTTTCCTTTCCCTTTCCAATCCTTATTCCTCGTTGTGTTAGTTTAGATGGTTCATCCTGATAATTAGCTTCCAATTAGTGTCGATAATTGCAGTATGCTCATCGTTTGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAACACAATCTGCGAGATTTGCCACCAGGTTTGTTGTGTTTATATTAAAAAAAGATGTCTTTAATGCAGGGCTAAATTTATGGTATCAAGAACTCCTTTTTCTTATCAGGACTTTAAGCCAGGGTACACAGCACCTCCCCATGTGTTTTATAATGGAGGTATTAGCTCACTAATGCATTTCAGGTAAGCCATTAACCAACCTATCTCCCCACAATGCATATAGTTTTCTTGTATATTGAGTTCCTGTTCATACATTTCTTCAACACTTTGATATCAAATTGTGGTCTCAGGGGAAGTTGGGAGATGTCAAGGCCGAACCAGCATGTCCCTGCAGGAATGCTCGATCACGAGTATCTCGATTCCGCGTTCGATGATTTCATCAGTCCCTCTCCATGCAGCGTACTGTGCTGCCGCATAGTTGCAGTAATGGTATTCCCTCTCTCTTCAATTTACTTCATTTGCAGTTTCCTTATCTCTGTAAACCAATTTTAAGTGTCTTGGCAATTGGCCTTGCTTTCTGCTGATTGAAAAGTATTACATGTTTTTGCTCGTTGATTCATTTTCATTGACTTATTGAGGCACCAAAGAAATTTAAAATACAGTATTTGGAAATTTAAAGATGAAAATGTAAGGAGTAAATGTTGAGAATTGTTGGGAGGGAGTCTTACTTTGGCTAATTTAGGAAATGATCATGGGTTTATAAGTAAGAAATACATCTATATTGGTATGAGACCTTTTGGAGAAGCTGAAAGCAAAGCCACGAGAGCTTATACTCAAAGTGGACAATATCATACTATTGTGGGTTCGTGATTTCTAACATGGTATTAGAGTCATGCCTTTAACTTAGCCATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGCCAAAATTGACTCAAGTGTCGAACAAAGGGAGTGTACTTTGTTCGAGGACTCCAGAGAAGGAGTCGAGCCTCGATTAAGAGGAGACTGTTCGAGGGCTCCATAGGGCTCGGGGGAGGCTCTGTAGTGTACTTTGTTCAAGGGGAAGATTGTTGAAGATTGTTCATTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTAAGAAATACATCTCCATTGGTATGAAATCTTTTGGGGAAGCCCAAAGCAAAACTATGAGAGCGGACAATATCATACCATTGTGGAGAGTCGTCATTCCTAAGAGTAAAAAGTTCAACAAATGTGGAGGAATGGATTTGAACCTCGAACTTCCACGAAAAGAGTAGATGCTTTAAACGCTAAGCTATGTTCATATTGGCAACTAAGATATTATTTAGCCTATTATTTTTTTTTTTTCTCGTATTTCTATCATTATGACAGTTGGATTGACCTGAAATCCTCAGTTTGAAACTGCTAATCATATCTGTATGTTGCAGTTCATCGTTCTCCTTGTTTTACGCCATACTCTACCGATTATAATTAGTGGAGCTGGAGAGTATTCACTGACATTGTTAATGGTAAGTTTGTTGCTCGGCCTTCCTCCATTGTTTAGACCAATGAAGAGCCACAAGTTCATGTTCTGTGTATTGCAGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTGCCTATATATGTCATGGTTAGGGTATTTACTTCCATTCGAAGACGGCGTCATTATCAGGTT TTTCTTCTATCGTAGAGATTCTATTCCCATATATAATGGGGGATCATTTTGTGCTGTTGGTGGATCGGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGATAAAAACATAATTCTTCATCCTATGGCCTCAACAACTGCAGATAATATGATATCTTCCATAGATATAGATATTGAATCCATATCACCTTCAACTAAACTTGTTGAGTGCAGAATTTGTCATGATGAGGATGATGAATCAAATATGGAAACACCCTGCTCTTGCCGTGGCAGCTTGAAGTATGCTCATCGTTTGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAACACAATCTGCGAGATTTGCCACCAGGACTTTAAGCCAGGGTACACAGCACCTCCCCATGTGTTTTATAATGGAGGTATTAGCTCACTAATGCATTTCAGGGGAAGTTGGGAGATGTCAAGGCCGAACCAGCATGTCCCTGCAGGAATGCTCGATCACGAGTATCTCGATTCCGCGTTCGATGATTTCATCAGTCCCTCTCCATGCAGCGTACTGTGCTGCCGCATAGTTGCAGTAATGTTCATCGTTCTCCTTGTTTTACGCCATACTCTACCGATTATAATTAGTGGAGCTGGAGAGTATTCACTGACATTGTTAATGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTGCCTATATATGTCATGGTTAGGGTATTTACTTCCATTCGAAGACGGCGTCATTATCAGGTT ATGGCCTCAACAACTGCAGATAATATGATATCTTCCATAGATATAGATATTGAATCCATATCACCTTCAACTAAACTTGTTGAGTGCAGAATTTGTCATGATGAGGATGATGAATCAAATATGGAAACACCCTGCTCTTGCCGTGGCAGCTTGAAGTATGCTCATCGTTTGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAACACAATCTGCGAGATTTGCCACCAGGACTTTAAGCCAGGGTACACAGCACCTCCCCATGTGTTTTATAATGGAGGTATTAGCTCACTAATGCATTTCAGGGGAAGTTGGGAGATGTCAAGGCCGAACCAGCATGTCCCTGCAGGAATGCTCGATCACGAGTATCTCGATTCCGCGTTCGATGATTTCATCAGTCCCTCTCCATGCAGCGTACTGTGCTGCCGCATAGTTGCAGTAATGTTCATCGTTCTCCTTGTTTTACGCCATACTCTACCGATTATAATTAGTGGAGCTGGAGAGTATTCACTGACATTGTTAATGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTGCCTATATATGTCATGGTTAGGGTATTTACTTCCATTCGAAGACGGCGTCATTATCAGGTT MASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIRRRRHYQV
BLAST of Carg07435-RA vs. NCBI nr
Match: XP_023522606.1 (uncharacterized protein LOC111786585 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023522612.1 uncharacterized protein LOC111786585 isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 392.9 bits (1008), Expect = 6.7e-106 Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 0
BLAST of Carg07435-RA vs. NCBI nr
Match: XP_022948599.1 (uncharacterized protein LOC111452226 isoform X2 [Cucurbita moschata] >XP_022948600.1 uncharacterized protein LOC111452226 isoform X2 [Cucurbita moschata]) HSP 1 Score: 391.7 bits (1005), Expect = 1.5e-105 Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 0
BLAST of Carg07435-RA vs. NCBI nr
Match: XP_022997793.1 (uncharacterized protein LOC111492643 isoform X2 [Cucurbita maxima] >XP_022997794.1 uncharacterized protein LOC111492643 isoform X2 [Cucurbita maxima]) HSP 1 Score: 382.5 bits (981), Expect = 9.1e-103 Identity = 189/198 (95.45%), Postives = 192/198 (96.97%), Query Frame = 0
BLAST of Carg07435-RA vs. NCBI nr
Match: XP_023522598.1 (uncharacterized protein LOC111786585 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 343.6 bits (880), Expect = 4.7e-91 Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0
BLAST of Carg07435-RA vs. NCBI nr
Match: XP_023522591.1 (uncharacterized protein LOC111786585 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 343.6 bits (880), Expect = 4.7e-91 Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0
BLAST of Carg07435-RA vs. TAIR10
Match: AT2G01275.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 186.0 bits (471), Expect = 2.3e-47 Identity = 90/175 (51.43%), Postives = 123/175 (70.29%), Query Frame = 0
BLAST of Carg07435-RA vs. TAIR10
Match: AT5G38070.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 181.4 bits (459), Expect = 5.6e-46 Identity = 97/203 (47.78%), Postives = 136/203 (67.00%), Query Frame = 0
BLAST of Carg07435-RA vs. TAIR10
Match: AT1G02610.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 134.4 bits (337), Expect = 7.8e-32 Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = 0
BLAST of Carg07435-RA vs. TAIR10
Match: AT1G14260.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 121.7 bits (304), Expect = 5.2e-28 Identity = 76/208 (36.54%), Postives = 99/208 (47.60%), Query Frame = 0
BLAST of Carg07435-RA vs. TAIR10
Match: AT2G02960.5 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 118.2 bits (295), Expect = 5.8e-27 Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 0
BLAST of Carg07435-RA vs. Swiss-Prot
Match: sp|Q5T0T0|MARH8_HUMAN (E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens OX=9606 GN=MARCH8 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 8.0e-10 Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 0
BLAST of Carg07435-RA vs. Swiss-Prot
Match: sp|Q0VD59|MARH8_BOVIN (E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus OX=9913 GN=MARCH8 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Carg07435-RA vs. Swiss-Prot
Match: sp|Q9DBD2|MARH8_MOUSE (E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus OX=10090 GN=March8 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Carg07435-RA vs. Swiss-Prot
Match: sp|Q5XH39|MARH8_XENLA (E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis OX=8355 GN=march8 PE=2 SV=2) HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09 Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0
BLAST of Carg07435-RA vs. Swiss-Prot
Match: sp|Q28IK8|MARH8_XENTR (E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis OX=8364 GN=march8 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09 Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0
BLAST of Carg07435-RA vs. TrEMBL
Match: tr|A0A0A0LBM8|A0A0A0LBM8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186720 PE=4 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 2.5e-85 Identity = 162/206 (78.64%), Postives = 180/206 (87.38%), Query Frame = 0
BLAST of Carg07435-RA vs. TrEMBL
Match: tr|A0A1S4E264|A0A1S4E264_CUCME (uncharacterized protein LOC103496860 OS=Cucumis melo OX=3656 GN=LOC103496860 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 4.2e-80 Identity = 157/238 (65.97%), Postives = 180/238 (75.63%), Query Frame = 0
BLAST of Carg07435-RA vs. TrEMBL
Match: tr|A0A2P5CBR3|A0A2P5CBR3_9ROSA (Zinc finger, RING-CH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_290980 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 2.1e-71 Identity = 140/208 (67.31%), Postives = 169/208 (81.25%), Query Frame = 0
BLAST of Carg07435-RA vs. TrEMBL
Match: tr|A0A2P5DVX3|A0A2P5DVX3_PARAD (Zinc finger, RING-CH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_026140 PE=4 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 2.8e-68 Identity = 135/209 (64.59%), Postives = 168/209 (80.38%), Query Frame = 0
BLAST of Carg07435-RA vs. TrEMBL
Match: tr|A0A2C9WBS4|A0A2C9WBS4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G073300 PE=4 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 1.1e-67 Identity = 127/194 (65.46%), Postives = 161/194 (82.99%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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