Carg22100-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACGCTTTATCGCTTCTGAGTGCGCGGATAGTCTGCAGATTGGTTTCAAGTTCTTTCATTGTGCGTCGAACAATTTGGAATCGGAGTTTTGGTAGTGATGACCGATTTGAGTTTGTTATGGAACCCTATAAGAAGGGGTTGGAGAGATCAGAGTCTTGTGAGTTTGAGAGTCTTAGATGCGATGATTTGTCTGTGAGAAGGGGTTTTCTAGAGGTTTCGAAAACTGATGCTGGAAAAGTTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTAGTGGCTTTGGATGAACTCCAACTAAAGGTCTCAGGAGTTCTTGTTAGGGAAGTTTTGAGGGGGATTTTGAGAAGCATAAATGTTCTAAACAAAACTCAGTGTGCAAAATTGGGGTACAAGTTCTTCGTGTGGTCTGGTAAGGTTGAGAATTTCAACCACACCGCGAGTTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCAAGGCTATGTGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTGATATGTACTTGTGGTGATGCAGGGTTGGCTAGGAAAGTTGTCGTGAGGTTTATCAAATCGAAAACGTTCAATTACAGGCCGTTTAAGCACTCTTATAATGCTATTCTCCATGCACTTCTTGGTATAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGATGGTCATAGCTCGGACATGCTGACATATAATTCGCTATTGTATGCAAGGTGCAAATTGGGGAAATTGGATCAGTTTCACAGATTGCTTGATGAAATGGCCAGGAACGGATTCTCTCCTGATTGTCATACTTATAACATTCTTCTCTATGTTCTTGGCAAAGGAGACAAGCCTCTTGCAGCTTTAAACCTTTTGAACCACATGAGGGAAGTGGGCTCTGATCCGAGCATTCTTCACTTCACGACGTTGATAAATGGACTTAGTCGGGCTGGAAATTTGGATGCTTGCAAATATTTTTTTGATGAACTTTCTAATAACGGCTGCACTCCTGATGTCGTTTGCTACACTGTGATGATCACAAGCTATACAGTAGCTGGGGAGCACGAAAAGGCTCGAGAACTTTTCGATGAGATGGTAATAAAGGGCCAACTCCCTAATGTATTTACATACAACTCCATGATTCGTGGGTTTTGTATGGTCGGTGAATTCGAGGAAGCTTACACTATGCTCGAAGAAATGGAATCCCGAGGCTGCAATCCAAATTTTCTTGTATATAGTACCCTTGTAAGTTATTTGCGAAACGCTGGACAGCTTTCCGAGGCTCACAAAGTTATTACACATATGGTCGAGAAGGGGCAATACGCGCATTTAGTGACGAAATTGAAGGGATATAGAAGATGCTAG ATGAACGCTTTATCGCTTCTGAGTGCGCGGATAGTCTGCAGATTGGTTTCAAGTTCTTTCATTGTGCGTCGAACAATTTGGAATCGGAGTTTTGGTAGTGATGACCGATTTGAGTTTGTTATGGAACCCTATAAGAAGGGGTTGGAGAGATCAGAGTCTTGTGAGTTTGAGAGTCTTAGATGCGATGATTTGTCTGTGAGAAGGGGTTTTCTAGAGGTTTCGAAAACTGATGCTGGAAAAGTTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTAGTGGCTTTGGATGAACTCCAACTAAAGGTCTCAGGAGTTCTTGTTAGGGAAGTTTTGAGGGGGATTTTGAGAAGCATAAATGTTCTAAACAAAACTCAGTGTGCAAAATTGGGGTACAAGTTCTTCGTGTGGTCTGGTAAGGTTGAGAATTTCAACCACACCGCGAGTTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCAAGGCTATGTGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTGATATGTACTTGTGGTGATGCAGGGTTGGCTAGGAAAGTTGTCGTGAGGTTTATCAAATCGAAAACGTTCAATTACAGGCCGTTTAAGCACTCTTATAATGCTATTCTCCATGCACTTCTTGGTATAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGATGGTCATAGCTCGGACATGCTGACATATAATTCGCTATTGTATGCAAGGTGCAAATTGGGGAAATTGGATCAGTTTCACAGATTGCTTGATGAAATGGCCAGGAACGGATTCTCTCCTGATTGTCATACTTATAACATTCTTCTCTATGTTCTTGGCAAAGGAGACAAGCCTCTTGCAGCTTTAAACCTTTTGAACCACATGAGGGAAGTGGGCTCTGATCCGAGCATTCTTCACTTCACGACGTTGATAAATGGACTTAGTCGGGCTGGAAATTTGGATGCTTGCAAATATTTTTTTGATGAACTTTCTAATAACGGCTGCACTCCTGATGTCGTTTGCTACACTGTGATGATCACAAGCTATACAGTAGCTGGGGAGCACGAAAAGGCTCGAGAACTTTTCGATGAGATGGTAATAAAGGGCCAACTCCCTAATGTATTTACATACAACTCCATGATTCGTGGGTTTTGTATGGTCGGTGAATTCGAGGAAGCTTACACTATGCTCGAAGAAATGGAATCCCGAGGCTGCAATCCAAATTTTCTTGTATATAGTACCCTTGTAAGTTATTTGCGAAACGCTGGACAGCTTTCCGAGGCTCACAAAGTTATTACACATATGGTCGAGAAGGGGCAATACGCGCATTTAGTGACGAAATTGAAGGGATATAGAAGATGCTAG ATGAACGCTTTATCGCTTCTGAGTGCGCGGATAGTCTGCAGATTGGTTTCAAGTTCTTTCATTGTGCGTCGAACAATTTGGAATCGGAGTTTTGGTAGTGATGACCGATTTGAGTTTGTTATGGAACCCTATAAGAAGGGGTTGGAGAGATCAGAGTCTTGTGAGTTTGAGAGTCTTAGATGCGATGATTTGTCTGTGAGAAGGGGTTTTCTAGAGGTTTCGAAAACTGATGCTGGAAAAGTTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTAGTGGCTTTGGATGAACTCCAACTAAAGGTCTCAGGAGTTCTTGTTAGGGAAGTTTTGAGGGGGATTTTGAGAAGCATAAATGTTCTAAACAAAACTCAGTGTGCAAAATTGGGGTACAAGTTCTTCGTGTGGTCTGGTAAGGTTGAGAATTTCAACCACACCGCGAGTTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCAAGGCTATGTGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTGATATGTACTTGTGGTGATGCAGGGTTGGCTAGGAAAGTTGTCGTGAGGTTTATCAAATCGAAAACGTTCAATTACAGGCCGTTTAAGCACTCTTATAATGCTATTCTCCATGCACTTCTTGGTATAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGATGGTCATAGCTCGGACATGCTGACATATAATTCGCTATTGTATGCAAGGTGCAAATTGGGGAAATTGGATCAGTTTCACAGATTGCTTGATGAAATGGCCAGGAACGGATTCTCTCCTGATTGTCATACTTATAACATTCTTCTCTATGTTCTTGGCAAAGGAGACAAGCCTCTTGCAGCTTTAAACCTTTTGAACCACATGAGGGAAGTGGGCTCTGATCCGAGCATTCTTCACTTCACGACGTTGATAAATGGACTTAGTCGGGCTGGAAATTTGGATGCTTGCAAATATTTTTTTGATGAACTTTCTAATAACGGCTGCACTCCTGATGTCGTTTGCTACACTGTGATGATCACAAGCTATACAGTAGCTGGGGAGCACGAAAAGGCTCGAGAACTTTTCGATGAGATGGTAATAAAGGGCCAACTCCCTAATGTATTTACATACAACTCCATGATTCGTGGGTTTTGTATGGTCGGTGAATTCGAGGAAGCTTACACTATGCTCGAAGAAATGGAATCCCGAGGCTGCAATCCAAATTTTCTTGTATATAGTACCCTTGTAAGTTATTTGCGAAACGCTGGACAGCTTTCCGAGGCTCACAAAGTTATTACACATATGGTCGAGAAGGGGCAATACGCGCATTTAGTGACGAAATTGAAGGGATATAGAAGATGCTAG MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIEWVYQQMLLDGHSSDMLTYNSLLYARCKLGKLDQFHRLLDEMARNGFSPDCHTYNILLYVLGKGDKPLAALNLLNHMREVGSDPSILHFTTLINGLSRAGNLDACKYFFDELSNNGCTPDVVCYTVMITSYTVAGEHEKARELFDEMVIKGQLPNVFTYNSMIRGFCMVGEFEEAYTMLEEMESRGCNPNFLVYSTLVSYLRNAGQLSEAHKVITHMVEKGQYAHLVTKLKGYRRC
BLAST of Carg22100-RA vs. NCBI nr
Match: XP_022944812.1 (pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita moschata]) HSP 1 Score: 507.3 bits (1305), Expect = 5.7e-140 Identity = 253/256 (98.83%), Postives = 253/256 (98.83%), Query Frame = 0
BLAST of Carg22100-RA vs. NCBI nr
Match: XP_023542888.1 (pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 505.8 bits (1301), Expect = 1.6e-139 Identity = 251/256 (98.05%), Postives = 253/256 (98.83%), Query Frame = 0
BLAST of Carg22100-RA vs. NCBI nr
Match: XP_022968463.1 (pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita maxima]) HSP 1 Score: 494.6 bits (1272), Expect = 3.8e-136 Identity = 248/256 (96.88%), Postives = 251/256 (98.05%), Query Frame = 0
BLAST of Carg22100-RA vs. NCBI nr
Match: XP_023552266.1 (pentatricopeptide repeat-containing protein At1g55630-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552267.1 pentatricopeptide repeat-containing protein At1g55630-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023552268.1 pentatricopeptide repeat-containing protein At1g55630-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 431.0 bits (1107), Expect = 5.2e-117 Identity = 218/266 (81.95%), Postives = 236/266 (88.72%), Query Frame = 0
BLAST of Carg22100-RA vs. NCBI nr
Match: XP_023552269.1 (pentatricopeptide repeat-containing protein At1g55630-like isoform X4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 430.6 bits (1106), Expect = 6.7e-117 Identity = 217/266 (81.58%), Postives = 236/266 (88.72%), Query Frame = 0
BLAST of Carg22100-RA vs. TAIR10
Match: AT1G55630.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 290.4 bits (742), Expect = 2.0e-78 Identity = 150/258 (58.14%), Postives = 185/258 (71.71%), Query Frame = 0
BLAST of Carg22100-RA vs. TAIR10
Match: AT3G60050.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 269.6 bits (688), Expect = 3.6e-72 Identity = 140/256 (54.69%), Postives = 183/256 (71.48%), Query Frame = 0
BLAST of Carg22100-RA vs. TAIR10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 63.5 bits (153), Expect = 3.9e-10 Identity = 42/170 (24.71%), Postives = 78/170 (45.88%), Query Frame = 0
BLAST of Carg22100-RA vs. TAIR10
Match: AT1G52640.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 56.6 bits (135), Expect = 4.8e-08 Identity = 36/141 (25.53%), Postives = 68/141 (48.23%), Query Frame = 0
BLAST of Carg22100-RA vs. TAIR10
Match: AT1G77405.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 53.5 bits (127), Expect = 4.1e-07 Identity = 30/119 (25.21%), Postives = 56/119 (47.06%), Query Frame = 0
BLAST of Carg22100-RA vs. Swiss-Prot
Match: sp|Q7X6A5|PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana OX=3702 GN=At1g55630 PE=2 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 3.6e-77 Identity = 150/258 (58.14%), Postives = 185/258 (71.71%), Query Frame = 0
BLAST of Carg22100-RA vs. Swiss-Prot
Match: sp|Q9M1D8|PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana OX=3702 GN=At3g60050 PE=2 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 6.5e-71 Identity = 140/256 (54.69%), Postives = 183/256 (71.48%), Query Frame = 0
BLAST of Carg22100-RA vs. Swiss-Prot
Match: sp|Q9FVX2|PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2) HSP 1 Score: 63.5 bits (153), Expect = 7.1e-09 Identity = 42/170 (24.71%), Postives = 78/170 (45.88%), Query Frame = 0
BLAST of Carg22100-RA vs. Swiss-Prot
Match: sp|Q9SSR6|PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g52640 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 8.6e-07 Identity = 36/141 (25.53%), Postives = 68/141 (48.23%), Query Frame = 0
BLAST of Carg22100-RA vs. Swiss-Prot
Match: sp|Q1PFC5|PP130_ARATH (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana OX=3702 GN=At1g77405 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 7.3e-06 Identity = 30/119 (25.21%), Postives = 56/119 (47.06%), Query Frame = 0
BLAST of Carg22100-RA vs. TrEMBL
Match: tr|A0A1S3AYB3|A0A1S3AYB3_CUCME (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucumis melo OX=3656 GN=LOC103484076 PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 4.9e-108 Identity = 194/257 (75.49%), Postives = 227/257 (88.33%), Query Frame = 0
BLAST of Carg22100-RA vs. TrEMBL
Match: tr|A0A0A0L8P4|A0A0A0L8P4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182100 PE=4 SV=1) HSP 1 Score: 390.6 bits (1002), Expect = 5.1e-105 Identity = 189/257 (73.54%), Postives = 225/257 (87.55%), Query Frame = 0
BLAST of Carg22100-RA vs. TrEMBL
Match: tr|A0A251QNA4|A0A251QNA4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G294500 PE=4 SV=1) HSP 1 Score: 318.5 bits (815), Expect = 2.5e-83 Identity = 160/269 (59.48%), Postives = 203/269 (75.46%), Query Frame = 0
BLAST of Carg22100-RA vs. TrEMBL
Match: tr|A0A2N9GTB9|A0A2N9GTB9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30482 PE=4 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 7.2e-83 Identity = 160/269 (59.48%), Postives = 203/269 (75.46%), Query Frame = 0
BLAST of Carg22100-RA vs. TrEMBL
Match: tr|A0A2P5ABM2|A0A2P5ABM2_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_354170 PE=4 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 1.0e-81 Identity = 160/269 (59.48%), Postives = 198/269 (73.61%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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