Carg17552-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17552-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GPI-anchored protein-like protein
Location	Cucurbita_argyrosperma_scaffold_183 : 186059 .. 186541 (-)
Sequence length	483

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAATTGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTCAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGCTGTCATCCGTGCTGTTGGGGTTGCTTCTTCTCTCTGGTTGA

mRNA sequence

ATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAATTGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTCAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGCTGTCATCCGTGCTGTTGGGGTTGCTTCTTCTCTCTGGTTGA

Coding sequence (CDS)

ATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAATTGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTCAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGCTGTCATCCGTGCTGTTGGGGTTGCTTCTTCTCTCTGGTTGA

Protein sequence

MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYLSKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVFAFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG

Homology

[Close]

BLAST of Carg17552-RA vs. NCBI nr
Match: XP_023537308.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.2 bits (822), Expect = 1.9e-84
Identity = 158/160 (98.75%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL
Sbjct: 37  MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 96

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQ+AKYWSKPEFTSVGIGCFEQWVVF
Sbjct: 97  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQMAKYWSKPEFTSVGIGCFEQWVVF 156

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG 161
           AFATDSPTGSFSSAVNLSDLGLRHFYL+SSVLLGLLLLSG
Sbjct: 157 AFATDSPTGSFSSAVNLSDLGLRHFYLVSSVLLGLLLLSG 196

[Close]

BLAST of Carg17552-RA vs. NCBI nr
Match: XP_022938133.1 (uncharacterized GPI-anchored protein At5g19250-like [Cucurbita moschata])

HSP 1 Score: 318.9 bits (816), Expect = 9.6e-84
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL
Sbjct: 42  MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 101

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQ+AKYWSKPEFTSVGIGCFEQWVVF
Sbjct: 102 SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQMAKYWSKPEFTSVGIGCFEQWVVF 161

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG 161
           AFATDSPTGSFSSAVNLSDLGLRHFYL+ SVLLGLLLLSG
Sbjct: 162 AFATDSPTGSFSSAVNLSDLGLRHFYLVLSVLLGLLLLSG 201

[Close]

BLAST of Carg17552-RA vs. NCBI nr
Match: XP_022965902.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 4.9e-80
Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           MNSYRKSIKLTPMNKNSKA CLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL
Sbjct: 42  MNSYRKSIKLTPMNKNSKADCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 101

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQ AKYWSKPEFTSVGIG +EQWVVF
Sbjct: 102 SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQTAKYWSKPEFTSVGIGSYEQWVVF 161

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG 161
           AFATDSP GSFSSAVNLSDLGLRHF+L+SSVLLGL LLSG
Sbjct: 162 AFATDSPPGSFSSAVNLSDLGLRHFHLVSSVLLGLFLLSG 201

[Close]

BLAST of Carg17552-RA vs. NCBI nr
Match: XP_022965901.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 4.9e-80
Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           MNSYRKSIKLTPMNKNSKA CLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL
Sbjct: 48  MNSYRKSIKLTPMNKNSKADCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 107

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQ AKYWSKPEFTSVGIG +EQWVVF
Sbjct: 108 SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQTAKYWSKPEFTSVGIGSYEQWVVF 167

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG 161
           AFATDSP GSFSSAVNLSDLGLRHF+L+SSVLLGL LLSG
Sbjct: 168 AFATDSPPGSFSSAVNLSDLGLRHFHLVSSVLLGLFLLSG 207

[Close]

BLAST of Carg17552-RA vs. NCBI nr
Match: XP_022965899.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 4.9e-80
Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           MNSYRKSIKLTPMNKNSKA CLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL
Sbjct: 87  MNSYRKSIKLTPMNKNSKADCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 146

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQ AKYWSKPEFTSVGIG +EQWVVF
Sbjct: 147 SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQTAKYWSKPEFTSVGIGSYEQWVVF 206

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG 161
           AFATDSP GSFSSAVNLSDLGLRHF+L+SSVLLGL LLSG
Sbjct: 207 AFATDSPPGSFSSAVNLSDLGLRHFHLVSSVLLGLFLLSG 246

[Close]

BLAST of Carg17552-RA vs. TAIR10
Match: AT5G19250.1 (Glycoprotein membrane precursor GPI-anchored)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-20
Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           +NSYR S+ LT +  N  A CL  +IA  F +Q   +   +GS   P      P+LP+ L
Sbjct: 37  INSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTN--TTGSASVPGTTPGFPNLPNLL 96

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           SKC++    T++G ILP  +P L  +LVL   T SQ +K  +  +FT +GIG  + W+V 
Sbjct: 97  SKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFTGIGIGSDDNWIVV 156

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLL 157
              T +P GS+S A N          L+SS L+ LL
Sbjct: 157 VLTTSTPEGSYSPASNSGAFAFGVNGLVSSSLMFLL 190

[Close]

BLAST of Carg17552-RA vs. TAIR10
Match: AT1G54860.1 (Glycoprotein membrane precursor GPI-anchored)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19
Identity = 49/136 (36.03%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNF-SQLPSLPDY 60
           +NSYR + ++ P  KN KA C+  +IA   +DQ P +   + ST+ P +   +L +  D 
Sbjct: 39  LNSYRTAQRVPPFAKNEKADCVADEIADKLEDQ-PCTNHTTASTVTPGSVPPRLTNYQDI 98

Query: 61  LSKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVV 120
           LS+CKI+ N T++GLILP+ IP     L L   T +  A+Y +   +   G+G  ++W+V
Sbjct: 99  LSECKIDPNTTRDGLILPVCIPNRIPTLALTNYTQTGYARYLNDSRYVGAGVGSEKEWMV 158

Query: 121 FAFATDSPTGSFSSAV 136
               T +P GSF++ V
Sbjct: 159 VVLTTSTPGGSFTAGV 173

[Close]

BLAST of Carg17552-RA vs. TAIR10
Match: AT3G06035.1 (Glycoprotein membrane precursor GPI-anchored)

HSP 1 Score: 91.3 bits (225), Expect = 5.9e-19
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           +NSYR +  LT ++KN  A CL  +IA  F ++   +   +GS   P    Q  + P  L
Sbjct: 36  INSYRTTQNLTILSKNENAECLADEIADQFKNKPCTND--TGSATVPGTEPQFANYPQIL 95

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           +KC + ++ T++G I+P  +P L  NLVL   T SQ +   +  +FT +GIG  + W+V 
Sbjct: 96  AKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTGIGIGKEDDWIVV 155

Query: 121 AFATDSPTGSFSSA 135
              T++P GS+S+A
Sbjct: 156 VLTTNTPEGSYSTA 167

[Close]

BLAST of Carg17552-RA vs. TAIR10
Match: AT5G19240.1 (Glycoprotein membrane precursor GPI-anchored)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12
Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 0


Query: 2   NSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYLS 61
           N YR+S+ LT + KN  A CL  ++     +Q   +   +GS   P     +P+ P+ L+
Sbjct: 38  NQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTN--TTGSASVPGTDPGIPNFPNLLA 97

Query: 62  KCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQ--WVV 121
           KC++  N T++GLIL +  P       L    N  L K  +  +FT  G+G      W+V
Sbjct: 98  KCRLNTNVTRDGLILQVCAPKHHSTPDLSSFAN-VLTKNLNDSKFTGAGVGIDSDGIWLV 157

Query: 122 FAFATDSPTGSFSSA 135
               T++P GS+S++
Sbjct: 158 TVLTTNTPGGSYSNS 169

[Close]

BLAST of Carg17552-RA vs. Swiss-Prot
Match: sp|P59833|UGPI3_ARATH (Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana OX=3702 GN=At5g19250 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-19
Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           +NSYR S+ LT +  N  A CL  +IA  F +Q   +   +GS   P      P+LP+ L
Sbjct: 37  INSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTN--TTGSASVPGTTPGFPNLPNLL 96

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           SKC++    T++G ILP  +P L  +LVL   T SQ +K  +  +FT +GIG  + W+V 
Sbjct: 97  SKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFTGIGIGSDDNWIVV 156

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLL 157
              T +P GS+S A N          L+SS L+ LL
Sbjct: 157 VLTTSTPEGSYSPASNSGAFAFGVNGLVSSSLMFLL 190

[Close]

BLAST of Carg17552-RA vs. Swiss-Prot
Match: sp|Q84MC0|UGPI4_ARATH (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 GN=At3g06035 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           +NSYR +  LT ++KN  A CL  +IA  F ++   +   +GS   P    Q  + P  L
Sbjct: 36  INSYRTTQNLTILSKNENAECLADEIADQFKNKPCTND--TGSATVPGTEPQFANYPQIL 95

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           +KC + ++ T++G I+P  +P L  NLVL   T SQ +   +  +FT +GIG  + W+V 
Sbjct: 96  AKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTGIGIGKEDDWIVV 155

Query: 121 AFATDSPTGSFSSA 135
              T++P GS+S+A
Sbjct: 156 VLTTNTPEGSYSTA 167

[Close]

BLAST of Carg17552-RA vs. Swiss-Prot
Match: sp|Q84VZ5|UGPI2_ARATH (Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana OX=3702 GN=At5g19240 PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-11
Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 0


Query: 2   NSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYLS 61
           N YR+S+ LT + KN  A CL  ++     +Q   +   +GS   P     +P+ P+ L+
Sbjct: 38  NQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTN--TTGSASVPGTDPGIPNFPNLLA 97

Query: 62  KCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQ--WVV 121
           KC++  N T++GLIL +  P       L    N  L K  +  +FT  G+G      W+V
Sbjct: 98  KCRLNTNVTRDGLILQVCAPKHHSTPDLSSFAN-VLTKNLNDSKFTGAGVGIDSDGIWLV 157

Query: 122 FAFATDSPTGSFSSA 135
               T++P GS+S++
Sbjct: 158 TVLTTNTPGGSYSNS 169

[Close]

BLAST of Carg17552-RA vs. TrEMBL
Match: tr|A0A1S4E078|A0A1S4E078_CUCME (uncharacterized GPI-anchored protein At5g19250-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495110 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.3e-65
Identity = 124/160 (77.50%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           MN YR S +LTPMN+NSKA C VKQIAWDFDDQ PLSIF SGS I PSN +QLP+LPDYL
Sbjct: 37  MNIYRSSKELTPMNRNSKADCFVKQIAWDFDDQLPLSIFTSGSNITPSNLTQLPNLPDYL 96

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           ++C IELN+TKNGLILPLHIPTL  NLVLH CT+SQ+A Y SKPEFTS+GIGC+EQW VF
Sbjct: 97  TRCNIELNNTKNGLILPLHIPTLVSNLVLHGCTHSQMANYLSKPEFTSIGIGCYEQWAVF 156

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG 161
           AFATDSPTGSF+SAV LS LGL HFYL+SS+L GL LLSG
Sbjct: 157 AFATDSPTGSFNSAVTLSKLGLHHFYLVSSLLFGLFLLSG 196

[Close]

BLAST of Carg17552-RA vs. TrEMBL
Match: tr|A6YTC6|A6YTC6_CUCME (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.3e-65
Identity = 124/160 (77.50%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           MN YR S +LTPMN+NSKA C VKQIAWDFDDQ PLSIF SGS I PSN +QLP+LPDYL
Sbjct: 247 MNIYRSSKELTPMNRNSKADCFVKQIAWDFDDQLPLSIFTSGSNITPSNLTQLPNLPDYL 306

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           ++C IELN+TKNGLILPLHIPTL  NLVLH CT+SQ+A Y SKPEFTS+GIGC+EQW VF
Sbjct: 307 TRCNIELNNTKNGLILPLHIPTLVSNLVLHGCTHSQMANYLSKPEFTSIGIGCYEQWAVF 366

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG 161
           AFATDSPTGSF+SAV LS LGL HFYL+SS+L GL LLSG
Sbjct: 367 AFATDSPTGSFNSAVTLSKLGLHHFYLVSSLLFGLFLLSG 406

[Close]

BLAST of Carg17552-RA vs. TrEMBL
Match: tr|A0A0A0LIM2|A0A0A0LIM2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021650 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 5.2e-62
Identity = 121/161 (75.16%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           MN YR S +LTPM++NSKA CLVKQIAWD DDQSPLSIF SGS I PSN +QLP+LPDYL
Sbjct: 1   MNKYRSSKELTPMHRNSKADCLVKQIAWDLDDQSPLSIFTSGSPIIPSNLTQLPNLPDYL 60

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
           +KCKIELN+T+ GLILPLHIPTLAL LVLH CT+SQ+  Y SKPEFTS+GIGC+E+W VF
Sbjct: 61  TKCKIELNNTRKGLILPLHIPTLALKLVLHGCTHSQMDNYLSKPEFTSIGIGCYEEWAVF 120

Query: 121 AFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGL-LLLSG 161
           AFATDSPTGSF+SAV LS LG +HF+L+SS+L GL  LLSG
Sbjct: 121 AFATDSPTGSFNSAVKLSKLGHQHFFLVSSLLFGLFFLLSG 161

[Close]

BLAST of Carg17552-RA vs. TrEMBL
Match: tr|W9S359|W9S359_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002452 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24
Identity = 61/146 (41.78%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           +NSYR+S +L P+ KN KA CL  +IA + +DQ P + F +G+ IAPS  +QL + P  L
Sbjct: 37  LNSYRQSQRLPPLVKNGKAECLADEIADEMEDQ-PCTTFAAGANIAPSTQTQLTNYPKLL 96

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVF 120
            KCKI+ N T +G+ILP+ +  L   L+L   T++  AKY +  ++T  G+G  + W+V 
Sbjct: 97  KKCKIDANTTSDGVILPVCVSNLVPTLLLTNYTHTSYAKYLNNTKYTGAGLGSEDDWMVV 156

Query: 121 AFATDSPTGSFSSAVNL-SDLGLRHF 146
             +T +PTGSFS +++L S +G  H+
Sbjct: 157 VLSTSTPTGSFSGSLSLVSMMGFGHY 181

[Close]

BLAST of Carg17552-RA vs. TrEMBL
Match: tr|A0A2P6R6U8|A0A2P6R6U8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0454541 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.7e-24
Identity = 70/161 (43.48%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 1   MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYL 60
           +NSYR+S+ L  + K+ KA CL ++IA D  DQ P S   +G+ I+P + ++LPSLP  L
Sbjct: 13  INSYRRSLSLPNLIKHDKADCLAEEIADDIQDQ-PCSSRTNGANISPKSSTELPSLPSNL 72

Query: 61  SKCKIELNHTKNGLILPLHIPTLALNLVLHECTNS-QLAKYWSKPEFTSVGIGCFEQWVV 120
            KCKI++N T +G+I+P+ +P     LVL   T+S + AK+ +   FT VGIG  + W V
Sbjct: 73  IKCKIDVNSTVDGVIMPVCVPKAVSTLVLTNYTSSPRYAKFLNDSRFTGVGIGTEDDWTV 132

Query: 121 FAFATDSPTGSFSSAVN--LSDLGLRHFYLLSSVLLGLLLL 159
              AT + TGSF++AVN  +S +G  H+  L S++LGL L+
Sbjct: 133 VVLATSTRTGSFANAVNSLVSTVGAVHY--LVSLMLGLWLI 170

The following BLAST results are available for this feature:

BLAST of Carg17552-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537308.1	1.9e-84	98.75	uncharacterized GPI-anchored protein At5g19250-like isoform X1 [Cucurbita pepo s...	[more]
XP_022938133.1	9.6e-84	98.13	uncharacterized GPI-anchored protein At5g19250-like [Cucurbita moschata]	[more]
XP_022965902.1	4.9e-80	95.00	uncharacterized GPI-anchored protein At5g19250-like isoform X3 [Cucurbita maxima...	[more]
XP_022965901.1	4.9e-80	95.00	uncharacterized GPI-anchored protein At5g19250-like isoform X2 [Cucurbita maxima...	[more]
XP_022965899.1	4.9e-80	95.00	uncharacterized GPI-anchored protein At5g19250-like isoform X1 [Cucurbita maxima...	[more]

BLAST of Carg17552-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19250.1	1.1e-20	37.82	Glycoprotein membrane precursor GPI-anchored	[more]
AT1G54860.1	2.0e-19	36.03	Glycoprotein membrane precursor GPI-anchored	[more]
AT3G06035.1	5.9e-19	35.82	Glycoprotein membrane precursor GPI-anchored	[more]
AT5G19240.1	1.4e-12	31.11	Glycoprotein membrane precursor GPI-anchored	[more]

BLAST of Carg17552-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P59833\|UGPI3_ARATH	1.9e-19	37.82	Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q84MC0\|UGPI4_ARATH	1.1e-17	35.82	Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q84VZ5\|UGPI2_ARATH	2.5e-11	31.11	Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg17552-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E078\|A0A1S4E078_CUCME	2.3e-65	77.50	uncharacterized GPI-anchored protein At5g19250-like isoform X2 OS=Cucumis melo O...	[more]
tr\|A6YTC6\|A6YTC6_CUCME	2.3e-65	77.50	GPI-anchored protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]
tr\|A0A0A0LIM2\|A0A0A0LIM2_CUCSA	5.2e-62	75.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021650 PE=4 SV=1	[more]
tr\|W9S359\|W9S359_9ROSA	3.3e-24	41.78	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002452 PE=4 SV=1	[more]
tr\|A0A2P6R6U8\|A0A2P6R6U8_ROSCH	9.7e-24	43.48	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0454541 PE=4...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17552	Carg17552	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17552-RA.CDS.1	Carg17552-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17552-RA.exon.1	Carg17552-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17552-RA	Carg17552-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33976	FAMILY NOT NAMED	coord: 1..158
None	No IPR available	PRODOM	PD208950		coord: 1..135 e-value: 4.0E-20 score: 238.0