Carg17552 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAATTGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTCAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGCTGTCATCCGTGCTGTTGGGGTTGCTTCTTCTCTCTGGTTGA ATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAATTGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTCAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGCTGTCATCCGTGCTGTTGGGGTTGCTTCTTCTCTCTGGTTGA ATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAATTGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTCAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGCTGTCATCCGTGCTGTTGGGGTTGCTTCTTCTCTCTGGTTGA MNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYLSKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQLAKYWSKPEFTSVGIGCFEQWVVFAFATDSPTGSFSSAVNLSDLGLRHFYLLSSVLLGLLLLSG
BLAST of Carg17552 vs. NCBI nr
Match: XP_023537308.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 321.2 bits (822), Expect = 1.9e-84 Identity = 158/160 (98.75%), Postives = 160/160 (100.00%), Query Frame = 0
BLAST of Carg17552 vs. NCBI nr
Match: XP_022938133.1 (uncharacterized GPI-anchored protein At5g19250-like [Cucurbita moschata]) HSP 1 Score: 318.9 bits (816), Expect = 9.6e-84 Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0
BLAST of Carg17552 vs. NCBI nr
Match: XP_022965902.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X3 [Cucurbita maxima]) HSP 1 Score: 306.6 bits (784), Expect = 4.9e-80 Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0
BLAST of Carg17552 vs. NCBI nr
Match: XP_022965901.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 306.6 bits (784), Expect = 4.9e-80 Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0
BLAST of Carg17552 vs. NCBI nr
Match: XP_022965899.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 306.6 bits (784), Expect = 4.9e-80 Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0
BLAST of Carg17552 vs. TAIR10
Match: AT5G19250.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 97.1 bits (240), Expect = 1.1e-20 Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 0
BLAST of Carg17552 vs. TAIR10
Match: AT1G54860.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19 Identity = 49/136 (36.03%), Postives = 78/136 (57.35%), Query Frame = 0
BLAST of Carg17552 vs. TAIR10
Match: AT3G06035.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 91.3 bits (225), Expect = 5.9e-19 Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 0
BLAST of Carg17552 vs. TAIR10
Match: AT5G19240.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12 Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 0
BLAST of Carg17552 vs. Swiss-Prot
Match: sp|P59833|UGPI3_ARATH (Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana OX=3702 GN=At5g19250 PE=2 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 1.9e-19 Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 0
BLAST of Carg17552 vs. Swiss-Prot
Match: sp|Q84MC0|UGPI4_ARATH (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 GN=At3g06035 PE=2 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17 Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 0
BLAST of Carg17552 vs. Swiss-Prot
Match: sp|Q84VZ5|UGPI2_ARATH (Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana OX=3702 GN=At5g19240 PE=2 SV=2) HSP 1 Score: 70.1 bits (170), Expect = 2.5e-11 Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 0
BLAST of Carg17552 vs. TrEMBL
Match: tr|A0A1S4E078|A0A1S4E078_CUCME (uncharacterized GPI-anchored protein At5g19250-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495110 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 2.3e-65 Identity = 124/160 (77.50%), Postives = 138/160 (86.25%), Query Frame = 0
BLAST of Carg17552 vs. TrEMBL
Match: tr|A6YTC6|A6YTC6_CUCME (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 2.3e-65 Identity = 124/160 (77.50%), Postives = 138/160 (86.25%), Query Frame = 0
BLAST of Carg17552 vs. TrEMBL
Match: tr|A0A0A0LIM2|A0A0A0LIM2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021650 PE=4 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 5.2e-62 Identity = 121/161 (75.16%), Postives = 139/161 (86.34%), Query Frame = 0
BLAST of Carg17552 vs. TrEMBL
Match: tr|W9S359|W9S359_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002452 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24 Identity = 61/146 (41.78%), Postives = 94/146 (64.38%), Query Frame = 0
BLAST of Carg17552 vs. TrEMBL
Match: tr|A0A2P6R6U8|A0A2P6R6U8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0454541 PE=4 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 9.7e-24 Identity = 70/161 (43.48%), Postives = 104/161 (64.60%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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