Carg16278-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCGGTGATTCCGGTGACAAAGAAGGGGCAGTTCAGAAGAGTGTTCGAGTGTGGGCCGGCCTACAGGACCATTGGTGGTCCCCATTGGTATCCTACTGCCACGCCGTCCATCATAATTATTCTAATTATAATTATATTTATATAATAATACTGCCCTGAGATGAGAGGCGCGGAATGATGAGCTGTCAGTTTGTTTTCTTTTTTTTTTAGGAAAGATGATGCTGTATTTGACGTCATCACCTCTTCTTTTTGTCCTTTTGTCTTTCTCTCTCCCCGCAATCAGGAGTGTTCTAAAAAATTGTGTTTTTTATTTTATTTATTATTATTATTTTCTCATAATTCGGCGCTTGATGGGCCTTATTTATGGGCCTTCAACCCATGATTGCTAGAAAGGTTCAAGCCCTATGGTGACCGCGGTGCGGTGGTGGAACGTGCACGGTAGGGTAGCGTTGGGTGCCTTTAGGCGTGCGACATGAGCCTTATTGGACATCAGCTGTTGCTGTGTTCCTTTCCAACCCATGTGCCCCTCCCTCGCAACTCCGTACAATATTGTCTACTTTAGGCATAACTTCCAGTAGTTTTGCTTTAAGATTTTCAAGTACCAAAATAGGGATATTATTATTTTTCTTTTTTTATAAAATATTATTAAATTTATTATGACATTTTATATTTTAAAATAAAATTATGTTAGAAAACGGTTGAAATGAATAAATAAGGTTACTCAAGGATGTTCTCATTTGCACTCCATCACTGCCATAATCACAGGTTTGTGTTCTTTGAATTTTGAATTTCGATTTTGTTACATTACGTTTTTCTTTCAATTTTAACTAATTTAAGCGCAGGGGAGCGACGTCGGGAATCGGAGCGGAGACGGCAAGAGTCTTAGCCAAGCGCGGCGCCAGGATCGTCATTCCGGTTCGCAACCTTAAAGCCGCCGTGGAAGTCAAGGCGCGAATCTGA ATGCCGGTGATTCCGGTGACAAAGAAGGGGCAGTTCAGAAGAGTGTTCGAGTGTGGGCCGGCCTACAGGACCATTGGTGGTCCCCATTGGGGAGCGACGTCGGGAATCGGAGCGGAGACGGCAAGAGTCTTAGCCAAGCGCGGCGCCAGGATCGTCATTCCGGTTCGCAACCTTAAAGCCGCCGTGGAAGTCAAGGCGCGAATCTGA ATGCCGGTGATTCCGGTGACAAAGAAGGGGCAGTTCAGAAGAGTGTTCGAGTGTGGGCCGGCCTACAGGACCATTGGTGGTCCCCATTGGGGAGCGACGTCGGGAATCGGAGCGGAGACGGCAAGAGTCTTAGCCAAGCGCGGCGCCAGGATCGTCATTCCGGTTCGCAACCTTAAAGCCGCCGTGGAAGTCAAGGCGCGAATCTGA MPVIPVTKKGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI
BLAST of Carg16278-RA vs. NCBI nr
Match: XP_022773537.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Durio zibethinus]) HSP 1 Score: 69.3 bits (168), Expect = 5.6e-09 Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 0
BLAST of Carg16278-RA vs. NCBI nr
Match: XP_010919277.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Elaeis guineensis]) HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09 Identity = 39/60 (65.00%), Postives = 42/60 (70.00%), Query Frame = 0
BLAST of Carg16278-RA vs. NCBI nr
Match: XP_016686400.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Gossypium hirsutum]) HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09 Identity = 40/60 (66.67%), Postives = 41/60 (68.33%), Query Frame = 0
BLAST of Carg16278-RA vs. NCBI nr
Match: XP_017610342.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Gossypium arboreum]) HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09 Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 0
BLAST of Carg16278-RA vs. NCBI nr
Match: OMO79823.1 (Short-chain dehydrogenase/reductase SDR [Corchorus capsularis]) HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09 Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0
BLAST of Carg16278-RA vs. TAIR10
Match: AT1G64590.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 59.3 bits (142), Expect = 1.1e-09 Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0
BLAST of Carg16278-RA vs. TAIR10
Match: AT4G24050.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09 Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
BLAST of Carg16278-RA vs. TAIR10
Match: AT5G50130.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 50.4 bits (119), Expect = 4.9e-07 Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0
BLAST of Carg16278-RA vs. TAIR10
Match: AT5G53100.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 43.9 bits (102), Expect = 4.6e-05 Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0
BLAST of Carg16278-RA vs. TAIR10
Match: AT5G53090.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 43.9 bits (102), Expect = 4.6e-05 Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 0
BLAST of Carg16278-RA vs. Swiss-Prot
Match: sp|Q6RVV4|TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 3.7e-04 Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0
BLAST of Carg16278-RA vs. TrEMBL
Match: tr|A0A1R3IB47|A0A1R3IB47_COCAP (Short-chain dehydrogenase/reductase SDR OS=Corchorus capsularis OX=210143 GN=CCACVL1_13385 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09 Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0
BLAST of Carg16278-RA vs. TrEMBL
Match: tr|A0A1U8J7T0|A0A1U8J7T0_GOSHI (short-chain dehydrogenase TIC 32, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107904516 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09 Identity = 40/60 (66.67%), Postives = 41/60 (68.33%), Query Frame = 0
BLAST of Carg16278-RA vs. TrEMBL
Match: tr|A0A2P5WX93|A0A2P5WX93_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA24946 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09 Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 0
BLAST of Carg16278-RA vs. TrEMBL
Match: tr|A0A061G5K7|A0A061G5K7_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_016543 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08 Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0
BLAST of Carg16278-RA vs. TrEMBL
Match: tr|A0A0D2SCP5|A0A0D2SCP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G020400 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08 Identity = 40/60 (66.67%), Postives = 41/60 (68.33%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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