Carg16278 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16278
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	short-chain dehydrogenase TIC 32, chloroplastic-like
Location	Cucurbita_argyrosperma_scaffold_077 : 489986 .. 490947 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGTGATTCCGGTGACAAAGAAGGGGCAGTTCAGAAGAGTGTTCGAGTGTGGGCCGGCCTACAGGACCATTGGTGGTCCCCATTGGTATCCTACTGCCACGCCGTCCATCATAATTATTCTAATTATAATTATATTTATATAATAATACTGCCCTGAGATGAGAGGCGCGGAATGATGAGCTGTCAGTTTGTTTTCTTTTTTTTTTAGGAAAGATGATGCTGTATTTGACGTCATCACCTCTTCTTTTTGTCCTTTTGTCTTTCTCTCTCCCCGCAATCAGGAGTGTTCTAAAAAATTGTGTTTTTTATTTTATTTATTATTATTATTTTCTCATAATTCGGCGCTTGATGGGCCTTATTTATGGGCCTTCAACCCATGATTGCTAGAAAGGTTCAAGCCCTATGGTGACCGCGGTGCGGTGGTGGAACGTGCACGGTAGGGTAGCGTTGGGTGCCTTTAGGCGTGCGACATGAGCCTTATTGGACATCAGCTGTTGCTGTGTTCCTTTCCAACCCATGTGCCCCTCCCTCGCAACTCCGTACAATATTGTCTACTTTAGGCATAACTTCCAGTAGTTTTGCTTTAAGATTTTCAAGTACCAAAATAGGGATATTATTATTTTTCTTTTTTTATAAAATATTATTAAATTTATTATGACATTTTATATTTTAAAATAAAATTATGTTAGAAAACGGTTGAAATGAATAAATAAGGTTACTCAAGGATGTTCTCATTTGCACTCCATCACTGCCATAATCACAGGTTTGTGTTCTTTGAATTTTGAATTTCGATTTTGTTACATTACGTTTTTCTTTCAATTTTAACTAATTTAAGCGCAGGGGAGCGACGTCGGGAATCGGAGCGGAGACGGCAAGAGTCTTAGCCAAGCGCGGCGCCAGGATCGTCATTCCGGTTCGCAACCTTAAAGCCGCCGTGGAAGTCAAGGCGCGAATCTGA

mRNA sequence

ATGCCGGTGATTCCGGTGACAAAGAAGGGGCAGTTCAGAAGAGTGTTCGAGTGTGGGCCGGCCTACAGGACCATTGGTGGTCCCCATTGGGGAGCGACGTCGGGAATCGGAGCGGAGACGGCAAGAGTCTTAGCCAAGCGCGGCGCCAGGATCGTCATTCCGGTTCGCAACCTTAAAGCCGCCGTGGAAGTCAAGGCGCGAATCTGA

Coding sequence (CDS)

ATGCCGGTGATTCCGGTGACAAAGAAGGGGCAGTTCAGAAGAGTGTTCGAGTGTGGGCCGGCCTACAGGACCATTGGTGGTCCCCATTGGGGAGCGACGTCGGGAATCGGAGCGGAGACGGCAAGAGTCTTAGCCAAGCGCGGCGCCAGGATCGTCATTCCGGTTCGCAACCTTAAAGCCGCCGTGGAAGTCAAGGCGCGAATCTGA

Protein sequence

MPVIPVTKKGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI

Homology

[Close]

BLAST of Carg16278 vs. NCBI nr
Match: XP_022773537.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Durio zibethinus])

HSP 1 Score: 69.3 bits (168), Expect = 5.6e-09
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K    +V E  P  R+I     GATSGIGAETARVLAKRGAR+V+P RNLKAA EVKARI
Sbjct: 20 KSTAEQVTETCPVLRSITAIITGATSGIGAETARVLAKRGARLVLPSRNLKAAEEVKARI 79

[Close]

BLAST of Carg16278 vs. NCBI nr
Match: XP_010919277.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Elaeis guineensis])

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 39/60 (65.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K     V E  P  R+I     GATSGIGAETARVLAKRGAR+V+P RNLKAA E KARI
Sbjct: 20 KSTAEEVTEASPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEETKARI 79

[Close]

BLAST of Carg16278 vs. NCBI nr
Match: XP_016686400.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Gossypium hirsutum])

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 40/60 (66.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K     V E  P  R I     GATSGIGAETARVLAKRGAR+VIP RNLKAA E KARI
Sbjct: 20 KSTAEEVTETSPDLRFITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARI 79

[Close]

BLAST of Carg16278 vs. NCBI nr
Match: XP_017610342.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Gossypium arboreum])

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K     V E  P  R+I     GATSGIGAETARVLAKRGAR+VIP RNLKAA E KARI
Sbjct: 20 KSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARI 79

[Close]

BLAST of Carg16278 vs. NCBI nr
Match: OMO79823.1 (Short-chain dehydrogenase/reductase SDR [Corchorus capsularis])

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K    +V E  P  R+I     GATSGIGAETARVLAKRGAR+V+P RNLKAA E KARI
Sbjct: 20 KSTAEQVTETSPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARI 79

[Close]

BLAST of Carg16278 vs. TAIR10
Match: AT1G64590.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-09
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 18 CGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 69
          C    R++     GATSGIGAETARVLAKRGAR+V+P R++K A E KARI
Sbjct: 28 CNSDLRSLTAIITGATSGIGAETARVLAKRGARLVLPARSVKTAEETKARI 78

[Close]

BLAST of Carg16278 vs. TAIR10
Match: AT4G24050.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 23 RTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 69
          R+I     GATSGIGAETARVLAKRGAR++ P RN+KAA E K RI
Sbjct: 33 RSITAVITGATSGIGAETARVLAKRGARLIFPARNVKAAEEAKERI 78

[Close]

BLAST of Carg16278 vs. TAIR10
Match: AT5G50130.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 4.9e-07
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 31 GATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 69
          G TSGIGAETARVLAKRG R+V+ VR++K A  VK RI
Sbjct: 43 GGTSGIGAETARVLAKRGVRVVMAVRDMKKAEMVKERI 80

[Close]

BLAST of Carg16278 vs. TAIR10
Match: AT5G53100.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 43.9 bits (102), Expect = 4.6e-05
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 31 GATSGIGAETARVLAKRGARIVIPVRNLKAAVEV 65
          G+TSGIG+ETAR LA+ GA +V+ VRN+KAA E+
Sbjct: 51 GSTSGIGSETARQLAEAGAHVVMAVRNIKAAHEL 84

[Close]

BLAST of Carg16278 vs. TAIR10
Match: AT5G53090.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 43.9 bits (102), Expect = 4.6e-05
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 31 GATSGIGAETARVLAKRGARIVIPVRNLKAAVEV 65
          G+TSGIG ETAR LA+ GAR+V+ VRN KAA E+
Sbjct: 63 GSTSGIGRETARQLAEAGARVVMAVRNTKAAHEL 96

[Close]

BLAST of Carg16278 vs. Swiss-Prot
Match: sp|Q6RVV4|TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-04
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 31 GATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 69
          GA+SGIGAET RVLA RGA +++ VRN+ AA +VK  I
Sbjct: 37 GASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKDTI 74

[Close]

BLAST of Carg16278 vs. TrEMBL
Match: tr|A0A1R3IB47|A0A1R3IB47_COCAP (Short-chain dehydrogenase/reductase SDR OS=Corchorus capsularis OX=210143 GN=CCACVL1_13385 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K    +V E  P  R+I     GATSGIGAETARVLAKRGAR+V+P RNLKAA E KARI
Sbjct: 20 KSTAEQVTETSPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARI 79

[Close]

BLAST of Carg16278 vs. TrEMBL
Match: tr|A0A1U8J7T0|A0A1U8J7T0_GOSHI (short-chain dehydrogenase TIC 32, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107904516 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 40/60 (66.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K     V E  P  R I     GATSGIGAETARVLAKRGAR+VIP RNLKAA E KARI
Sbjct: 20 KSTAEEVTETSPDLRFITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARI 79

[Close]

BLAST of Carg16278 vs. TrEMBL
Match: tr|A0A2P5WX93|A0A2P5WX93_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA24946 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K     V E  P  R+I     GATSGIGAETARVLAKRGAR+VIP RNLKAA E KARI
Sbjct: 20 KSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARI 79

[Close]

BLAST of Carg16278 vs. TrEMBL
Match: tr|A0A061G5K7|A0A061G5K7_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_016543 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K    +V E  P  R+I     GATSGIGAETARVLAKRGAR+V+P RNLKAA E KARI
Sbjct: 20 KSTAEQVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARI 79

[Close]

BLAST of Carg16278 vs. TrEMBL
Match: tr|A0A0D2SCP5|A0A0D2SCP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G020400 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 40/60 (66.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 9  KGQFRRVFECGPAYRTIGGPHWGATSGIGAETARVLAKRGARIVIPVRNLKAAVEVKARI 68
          K     V E  P  R I     GATSGIGAETARVLAKRGAR+VIP RNLKAA E KARI
Sbjct: 20 KSTAEEVTETCPDLRFITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARI 79

The following BLAST results are available for this feature:

BLAST of Carg16278 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022773537.1	5.6e-09	66.67	short-chain dehydrogenase TIC 32, chloroplastic-like [Durio zibethinus]	[more]
XP_010919277.1	7.4e-09	65.00	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Elaeis guineensis]	[more]
XP_016686400.1	7.4e-09	66.67	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Gossypium hirsu...	[more]
XP_017610342.1	7.4e-09	66.67	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Gossypium arbor...	[more]
OMO79823.1	7.4e-09	65.00	Short-chain dehydrogenase/reductase SDR [Corchorus capsularis]	[more]

BLAST of Carg16278 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64590.1	1.1e-09	62.75	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G24050.1	1.4e-09	69.57	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT5G50130.1	4.9e-07	71.05	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT5G53100.1	4.6e-05	64.71	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT5G53090.1	4.6e-05	67.65	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of Carg16278 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6RVV4\|TIC32_PEA	3.7e-04	63.16	Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC3...	[more]

BLAST of Carg16278 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1R3IB47\|A0A1R3IB47_COCAP	4.9e-09	65.00	Short-chain dehydrogenase/reductase SDR OS=Corchorus capsularis OX=210143 GN=CCA...	[more]
tr\|A0A1U8J7T0\|A0A1U8J7T0_GOSHI	4.9e-09	66.67	short-chain dehydrogenase TIC 32, chloroplastic-like OS=Gossypium hirsutum OX=36...	[more]
tr\|A0A2P5WX93\|A0A2P5WX93_GOSBA	4.9e-09	66.67	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA24946 PE=3 SV...	[more]
tr\|A0A061G5K7\|A0A061G5K7_THECC	1.1e-08	65.00	NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao OX=3641 GN=T...	[more]
tr\|A0A0D2SCP5\|A0A0D2SCP5_GOSRA	1.1e-08	66.67	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G020400 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16278-RA	Carg16278-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.720		coord: 30..68 e-value: 9.2E-8 score: 34.3
None	No IPR available	PANTHER	PTHR24320:SF114	SUBFAMILY NOT NAMED	coord: 28..68
None	No IPR available	PANTHER	PTHR24320	FAMILY NOT NAMED	coord: 28..68
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 31..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16278	CmoCh06G005970	Cucurbita moschata (Rifu)	carcmoB0933
Carg16278	Cla97C10G185500	Watermelon (97103) v2	carwmbB0705
Carg16278	BhiUN179G11	Wax gourd	carwgoB0798

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16278	Carg19489	Silver-seed gourd	carcarB442

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16278	Cucumber (Gy14) v2	carcgybB0677
Carg16278	Cucumber (Gy14) v1	carcgyB0759
Carg16278	Cucurbita maxima (Rimu)	carcmaB0956
Carg16278	Cucurbita maxima (Rimu)	carcmaB0957
Carg16278	Cucurbita moschata (Rifu)	carcmoB0932
Carg16278	Cucurbita pepo (Zucchini)	carcpeB0955
Carg16278	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16278	Wild cucumber (PI 183967)	carcpiB0713
Carg16278	Cucumber (Chinese Long) v2	carcuB0701
Carg16278	Cucumber (Chinese Long) v3	carcucB0715
Carg16278	Bottle gourd (USVL1VR-Ls)	carlsiB621
Carg16278	Melon (DHL92) v3.5.1	carmeB0681
Carg16278	Melon (DHL92) v3.6.1	carmedB0693
Carg16278	Watermelon (Charleston Gray)	carwcgB0655
Carg16278	Watermelon (97103) v1	carwmB0678