Carg16270-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACGTGAACCAAGTAATCAACTCCATACAGAAAACTATGGGTATCCTATCAGCTGCCTCTTTTACAACGCCTGTATGCCCAATTTTGCTTCATCTAATATATAATTCGTTCTTTGTTCACTGCTTATTCCACTCTATACCAGTGATATTGTTCTTGATTTTGCAGTAATTCACTAGTTTTGGAGCTAGATAACATGGTTAAATGAGAAGTGTTCCATTCAGGTTCCTATGGGGGTTGTTGAGTGAGTCTTTCTAGCTTTACAAACATTTTTTTTTTTTTTACTCTTCCACTTATTGTTTGTTCGTTCTTACTTTTGTTCCATTAGTTTCATTGATGCTGGGAAGAATCCAGATGAATTTGCAAGGGATGTCTTAAATAGTTGAATTGCAAAAAATCAGAGTACAAAAGGCAGCACTGATGCCTTCAAGGTAGTCTTTAAATCTCCATGTGGCAGGCTTTTAAAATCTACTTATCTCTTATTTGTATTTTGATTTCCGAAAGTTCACGAAAGTCTTTATTGAATGTTGTACTACTTACTATATTCAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGTGAGTTGAAATTTCTTTTTGCTGTCAATTTTATCTCTACCTTCAAATTTTGCTCAAGATGATTGGATATATATACTTTATCCAACAAGTCCTAGTTTTTTTTTCTAAATAATTTGACTTGTTTTGTTTGTTTCGTGCTTCTTAGTGTGATCTTGCTCCTTATAAGTGAATTATGTAACTTACGTTGTATAAAGACATTATAAATCAGAATAAGCATGGGTCCTTCCCTGCAAGTTTGTTTGTGTAACGGCCTAAGCCTGCTATTAGCAGATATTGTCTGCTTTGGCCCATTACGTATGCTGTCAGCCTCACGATCTTAAAACGCATCTTTCAAAGTTACGCAACGGAACCGATACTCATCCAGATACTGTCCTTTTTCGACTTTCCTTTTCGGGCTTTCCCTTCTGGACTTCCCCATTATGTGTCTACTAGGGAGATGTTTCAACACCCTTATAAGTAATGCTTCATTTCCCTCCCCAACCGATGTGAGATCTCGCAGTTTGATACAAAAAAAATTGATAGGAGATGAAAATTTATTGCAATATCAAATTGGAATAAACGTGTAGTAGTCTTTCTAGATTACTCTCCCAGCACAAATTTTCCAAGCGATCACTTAATTCTAAATTTGCCTCACTCACTAGTTATAACCAGCCCTTTCTAGTATGTTCATTAACCAACGACTAATTTATTTATTGTGAGAGTACTTGTAAGGGTTATGCTGGGAATATTAGTAAGGTCATAGTGGTAATTAGTTGGAAGTGCCTTGGTTATAAAATAGAGGGAGCTTAGAGGGGGGAATGATTTTGGTATTGTCCAGTGTTTGCACTTTGGGAGAGAAACTCAAATCCTAGCAGAACCTCTGCTTTGGACAGCCCATGCCATGTCTGAGTTTGGAAAGCCAAAAACTTCTACTTCTGTTAAACAGCTATGTTGTGAGGTTGTTTGACCAGGGAATCAATTATAACAAGAACAGACATAAGTATGCATCTTAGAGAAAACTCTTGGTTTAGTTTTTGGTTTATTTATTTTCTTTATTGTTATTATTTTTTTAACTTTCAGGTTATTCATCAAGATTTTGCCGTAAAAGGTCATTATTTATAATTTTTTTCTGTTATTGGGCTCAAATTTTAATCTTGTTGCAACAAATGCAGGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGGTTTAAGTGCCTTCTGAGTTGATTATCAGGTCTTTGAAGTTCTTCACATACCATCATTTTTCATCATGCCTTCAGCATATAATAATTTGATTGGGCATCATATTTCACATGATTTTAGTCTCATTCAAGGGATTGATAAGAGAATAATCACTCTTATCACCCCCTCCCCTCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAGAAAAAAGGAAAAAGAATCTACATCATCCTTATTCTATTACTCTGTTACTTGCTATGGAGATAACATTGTATATGCTGTGACTGACTTATTGAGTGGAAGATGGTCGCTTCCCATATTTCATGTTCCTCGTGATCTGAAACCATTATTTCGAATGAAATTGGGGTTTCTTACCTTAAAAAAAAAAAAAAAAAAAAAAAATCTACCATCAATTTCGAATTCAACTTTCTTTGGCGCATCCAAATGTGTGTTTTAGTTCTTTTGGAATTGTGAATCATGATCATGTGACTTTTACTTCTTTTGTACTGGAACATGAGCATGACATGGTTGCTAACTTGAACATGGTTTAATCTGGTAATCACAAGCATATTTTGATCAATTTGTTAAGAAATATATCTTTTTCTAGAAGTCAAATGTGTTTTTTTTTTTACTTCAACATGTGGGTGTGAGGATTTTCAATCTGCTGACTTATTGGTCGAAAGTACATCTAAGTTATGATCAATTTTCTGTAGAAGGTATATATTTTAACTGAAACTTCGTGAATTTGAACAGGGAATTCTTTCTTATTTTATACTCGATTCAGTTGAAAAGATGTTTTCAAGAACAAATTAGTTGCTCAAAATAGGTAAGGTAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGGTGTGTTTAAGTTCTGTTTTCTACTTTTTCTTGTTGAATGAATCTTTTCGTAACTGGATTCTCACTTTTCTGTTAATTAGTAGCGTAAATTCATGTACACTTTCTTTCCTCATTTCAAACTCTGAATTGTGAATCTCATATTTATCCCTAGCTGCTATTTCCCAAATGATTTGTTTGTGTACTTTGTATCCATCTATCCATAATTGTGCACATACCATGGGCTACGTCTAAGTGAGGTTTTAGCACACCTAAAAACACTTGTTCGAAAACACGCTTAGTACTCAAATTTCTCACTCAGATTCATCAACACTTGAAAGTACTCTGTAAAGAACTTTGTAAAGAAGCACTTGTTGACCGCTTTTGGTGTACTTGATCACTAAGAAAGTACTCAAACACACTTTTAAAAGTGCAGCATGGGTTGGTGAAATCTCAACTTCTCCATCATTATATTTTTCTTTATAGACAAATTTTTATTTTCATGCTACAAGCCTTGAAGATGTCGTTCTAGTTGAGACCCGTATATTTGTTTTTCTACCTTATCAAAGAATATGTTATTTAGTTTTGTAAACAATGGAAACAATACTAACAGTTTCTAGAAATGCAATATTCTCAGGTTGTAGAATATTGAAAGAGCCAAGAAGATCATTTAGTGGCTGTGATGTAGGTGGCATGCATTGGTGTTGCAGGGCATGAATCAAAGTATAGCTACCAATAACGATGCGAGTTTGAAGACCAACATTGGCTGTAGGAAGGATGGCAGGTACATTCTTGGTGCTAAGTTGAGTCTTATCTTACTTGTCAGGTTGATATTGGAAAATCCGGTGTATGCACCTTGAGGACTAACTTAAGTATGTGCTTTTAACATAAGAAAATAAGAGGCATTCAACTATGGGAACGTGTTGACTATGCTTCATAATGTGTTTAGAGCCTATGCTGTGATGTGATATTTTATACATCGGTATTTACCTTCTAAAAAGAATTCTCTTAAAATAAGTACAATTCTACCATGTCGTGTCATTTGTATTGTTATTTTGTGTGTGTTAGAATGAGTTGACCAAGTCGTATTGACAACCTAGCAAATGAGTGTTTGTATTGTCATCTTGTGACTTCTGGATGTCGGTTTTGAGTTAGGAACTGTCATGAATATCTCATACAATTGACAATATATTAGACACGAATGATGGAGTAAACTAGTGGGTTCAATCGATATGACTTTTCTAGTCATGGGATATGTTTAGTTAGTATAAGAACGACATTTTATGCATCATAGAAGCAACCCACGCCCTATAAGAAACGAACAACTTGGCTGGCTAGTATTATTATTGGAAAGTATACTTTCTTTTGATCCAATATTTAAACGTGATGTTTGAGAGACAACTAAGGAAAGGTCCCACAGAACAAAGAAAGGGGTTAAAAAGTCATGGTAGAATGATTTAGAAAGTTGAAAATAGACCAAAAACATCACATTACAAAGCATCATAGCATGTGATCTGTTGAAGTTGAATGATCACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAACTTAAATCAAAGTAATTGGATTGAGTTGTGAAGTGGGGGCCATGTGATTACAAATATATCATCTCATTTGATTCATATCCAAAGCAACAGATCAAGCCTTAGTTTGTGTCTTTGTTTTTTTCTAATTCTAGTTTCAAACTGAAGGCCAATGTGTTATGTGTGTGCCACTTTTCTTGGTCAAATTACCTCTTTTTCCTCTCTTAATTGTCTACATGATCTGGTTGTTGCTATGTCAATGCTCCAATTATTTTTTACTTTGAATTTTTTTTTGTAGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAAATTAAAGGAGTTAAATCGTCACTTCCAGGGACTAAGACATTAATTAATGCAGGTATAAGGACCAAAGGTATAATTTGACCTATTTTTTTCTGCCTCTAATTTCAACTATATTTATATTAATTTAAGGTTAAATTAAAAAAACTATAAAGT ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACTAATTCACTAGTTTTGGAGCTAGATAACATGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAAATTAAAGGAGTTAAATCGTCACTTCCAGGGACTAAGACATTAATTAATGCAGGTATAAGGACCAAAGGTATAATTTGACCTATTTTTTTCTGCCTCTAATTTCAACTATATTTATATTAATTTAAGGTTAAATTAAAAAAACTATAAAGT ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACTAATTCACTAGTTTTGGAGCTAGATAACATGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAA MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLGFSTRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFLIESLRVYPLCYNQVGFPGLNCFKF
BLAST of Carg16270-RA vs. NCBI nr
Match: XP_004146135.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sativus] >XP_011650296.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sativus] >XP_011650297.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sativus]) HSP 1 Score: 90.5 bits (223), Expect = 7.1e-15 Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0
BLAST of Carg16270-RA vs. NCBI nr
Match: XP_008448559.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo] >XP_008448560.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo] >XP_008448561.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo]) HSP 1 Score: 90.5 bits (223), Expect = 7.1e-15 Identity = 84/185 (45.41%), Postives = 88/185 (47.57%), Query Frame = 0
BLAST of Carg16270-RA vs. NCBI nr
Match: KGN55669.1 (Nut2 [Cucumis sativus]) HSP 1 Score: 90.5 bits (223), Expect = 7.1e-15 Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0
BLAST of Carg16270-RA vs. NCBI nr
Match: CAN83497.1 (hypothetical protein VITISV_026967 [Vitis vinifera]) HSP 1 Score: 90.1 bits (222), Expect = 9.3e-15 Identity = 42/53 (79.25%), Postives = 51/53 (96.23%), Query Frame = 0
BLAST of Carg16270-RA vs. NCBI nr
Match: XP_023910486.1 (mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910487.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910490.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910491.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910492.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910493.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910494.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >POF12615.1 isoform 2 of mediator of rna polymerase ii transcription subunit 10b [Quercus suber]) HSP 1 Score: 90.1 bits (222), Expect = 9.3e-15 Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg16270-RA vs. TAIR10
Match: AT5G41910.1 (Mediator complex, subunit Med10) HSP 1 Score: 77.0 bits (188), Expect = 1.5e-14 Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0
BLAST of Carg16270-RA vs. TAIR10
Match: AT1G26665.2 (Mediator complex, subunit Med10) HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14 Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
BLAST of Carg16270-RA vs. Swiss-Prot
Match: sp|Q9FHZ2|MD10A_ARATH (Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana OX=3702 GN=MED10A PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.7e-13 Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0
BLAST of Carg16270-RA vs. Swiss-Prot
Match: sp|F4HPA7|MD10B_ARATH (Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana OX=3702 GN=MED10B PE=1 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.5e-13 Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
BLAST of Carg16270-RA vs. TrEMBL
Match: tr|A0A1S3BJY3|A0A1S3BJY3_CUCME (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 GN=LOC103490703 PE=3 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15 Identity = 84/185 (45.41%), Postives = 88/185 (47.57%), Query Frame = 0
BLAST of Carg16270-RA vs. TrEMBL
Match: tr|A0A0A0L3Q2|A0A0A0L3Q2_CUCSA (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis sativus OX=3659 GN=MED10 PE=3 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15 Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0
BLAST of Carg16270-RA vs. TrEMBL
Match: tr|A0A2P4M549|A0A2P4M549_QUESU (Mediator of RNA polymerase II transcription subunit 10 OS=Quercus suber OX=58331 GN=MED10 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15 Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg16270-RA vs. TrEMBL
Match: tr|A5BR75|A5BR75_VITVI (Mediator of RNA polymerase II transcription subunit 10 OS=Vitis vinifera OX=29760 GN=MED10 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15 Identity = 42/53 (79.25%), Postives = 51/53 (96.23%), Query Frame = 0
BLAST of Carg16270-RA vs. TrEMBL
Match: tr|A0A2P4JQN7|A0A2P4JQN7_QUESU (Mediator of RNA polymerase II transcription subunit 10 OS=Quercus suber OX=58331 GN=MED10 PE=3 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14 Identity = 43/49 (87.76%), Postives = 49/49 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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