Carg16270 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16270
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mediator of RNA polymerase II transcription subunit 10
Location	Cucurbita_argyrosperma_scaffold_077 : 428909 .. 433997 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACGTGAACCAAGTAATCAACTCCATACAGAAAACTATGGGTATCCTATCAGCTGCCTCTTTTACAACGCCTGTATGCCCAATTTTGCTTCATCTAATATATAATTCGTTCTTTGTTCACTGCTTATTCCACTCTATACCAGTGATATTGTTCTTGATTTTGCAGTAATTCACTAGTTTTGGAGCTAGATAACATGGTTAAATGAGAAGTGTTCCATTCAGGTTCCTATGGGGGTTGTTGAGTGAGTCTTTCTAGCTTTACAAACATTTTTTTTTTTTTTACTCTTCCACTTATTGTTTGTTCGTTCTTACTTTTGTTCCATTAGTTTCATTGATGCTGGGAAGAATCCAGATGAATTTGCAAGGGATGTCTTAAATAGTTGAATTGCAAAAAATCAGAGTACAAAAGGCAGCACTGATGCCTTCAAGGTAGTCTTTAAATCTCCATGTGGCAGGCTTTTAAAATCTACTTATCTCTTATTTGTATTTTGATTTCCGAAAGTTCACGAAAGTCTTTATTGAATGTTGTACTACTTACTATATTCAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGTGAGTTGAAATTTCTTTTTGCTGTCAATTTTATCTCTACCTTCAAATTTTGCTCAAGATGATTGGATATATATACTTTATCCAACAAGTCCTAGTTTTTTTTTCTAAATAATTTGACTTGTTTTGTTTGTTTCGTGCTTCTTAGTGTGATCTTGCTCCTTATAAGTGAATTATGTAACTTACGTTGTATAAAGACATTATAAATCAGAATAAGCATGGGTCCTTCCCTGCAAGTTTGTTTGTGTAACGGCCTAAGCCTGCTATTAGCAGATATTGTCTGCTTTGGCCCATTACGTATGCTGTCAGCCTCACGATCTTAAAACGCATCTTTCAAAGTTACGCAACGGAACCGATACTCATCCAGATACTGTCCTTTTTCGACTTTCCTTTTCGGGCTTTCCCTTCTGGACTTCCCCATTATGTGTCTACTAGGGAGATGTTTCAACACCCTTATAAGTAATGCTTCATTTCCCTCCCCAACCGATGTGAGATCTCGCAGTTTGATACAAAAAAAATTGATAGGAGATGAAAATTTATTGCAATATCAAATTGGAATAAACGTGTAGTAGTCTTTCTAGATTACTCTCCCAGCACAAATTTTCCAAGCGATCACTTAATTCTAAATTTGCCTCACTCACTAGTTATAACCAGCCCTTTCTAGTATGTTCATTAACCAACGACTAATTTATTTATTGTGAGAGTACTTGTAAGGGTTATGCTGGGAATATTAGTAAGGTCATAGTGGTAATTAGTTGGAAGTGCCTTGGTTATAAAATAGAGGGAGCTTAGAGGGGGGAATGATTTTGGTATTGTCCAGTGTTTGCACTTTGGGAGAGAAACTCAAATCCTAGCAGAACCTCTGCTTTGGACAGCCCATGCCATGTCTGAGTTTGGAAAGCCAAAAACTTCTACTTCTGTTAAACAGCTATGTTGTGAGGTTGTTTGACCAGGGAATCAATTATAACAAGAACAGACATAAGTATGCATCTTAGAGAAAACTCTTGGTTTAGTTTTTGGTTTATTTATTTTCTTTATTGTTATTATTTTTTTAACTTTCAGGTTATTCATCAAGATTTTGCCGTAAAAGGTCATTATTTATAATTTTTTTCTGTTATTGGGCTCAAATTTTAATCTTGTTGCAACAAATGCAGGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGGTTTAAGTGCCTTCTGAGTTGATTATCAGGTCTTTGAAGTTCTTCACATACCATCATTTTTCATCATGCCTTCAGCATATAATAATTTGATTGGGCATCATATTTCACATGATTTTAGTCTCATTCAAGGGATTGATAAGAGAATAATCACTCTTATCACCCCCTCCCCTCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAGAAAAAAGGAAAAAGAATCTACATCATCCTTATTCTATTACTCTGTTACTTGCTATGGAGATAACATTGTATATGCTGTGACTGACTTATTGAGTGGAAGATGGTCGCTTCCCATATTTCATGTTCCTCGTGATCTGAAACCATTATTTCGAATGAAATTGGGGTTTCTTACCTTAAAAAAAAAAAAAAAAAAAAAAAATCTACCATCAATTTCGAATTCAACTTTCTTTGGCGCATCCAAATGTGTGTTTTAGTTCTTTTGGAATTGTGAATCATGATCATGTGACTTTTACTTCTTTTGTACTGGAACATGAGCATGACATGGTTGCTAACTTGAACATGGTTTAATCTGGTAATCACAAGCATATTTTGATCAATTTGTTAAGAAATATATCTTTTTCTAGAAGTCAAATGTGTTTTTTTTTTTACTTCAACATGTGGGTGTGAGGATTTTCAATCTGCTGACTTATTGGTCGAAAGTACATCTAAGTTATGATCAATTTTCTGTAGAAGGTATATATTTTAACTGAAACTTCGTGAATTTGAACAGGGAATTCTTTCTTATTTTATACTCGATTCAGTTGAAAAGATGTTTTCAAGAACAAATTAGTTGCTCAAAATAGGTAAGGTAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGGTGTGTTTAAGTTCTGTTTTCTACTTTTTCTTGTTGAATGAATCTTTTCGTAACTGGATTCTCACTTTTCTGTTAATTAGTAGCGTAAATTCATGTACACTTTCTTTCCTCATTTCAAACTCTGAATTGTGAATCTCATATTTATCCCTAGCTGCTATTTCCCAAATGATTTGTTTGTGTACTTTGTATCCATCTATCCATAATTGTGCACATACCATGGGCTACGTCTAAGTGAGGTTTTAGCACACCTAAAAACACTTGTTCGAAAACACGCTTAGTACTCAAATTTCTCACTCAGATTCATCAACACTTGAAAGTACTCTGTAAAGAACTTTGTAAAGAAGCACTTGTTGACCGCTTTTGGTGTACTTGATCACTAAGAAAGTACTCAAACACACTTTTAAAAGTGCAGCATGGGTTGGTGAAATCTCAACTTCTCCATCATTATATTTTTCTTTATAGACAAATTTTTATTTTCATGCTACAAGCCTTGAAGATGTCGTTCTAGTTGAGACCCGTATATTTGTTTTTCTACCTTATCAAAGAATATGTTATTTAGTTTTGTAAACAATGGAAACAATACTAACAGTTTCTAGAAATGCAATATTCTCAGGTTGTAGAATATTGAAAGAGCCAAGAAGATCATTTAGTGGCTGTGATGTAGGTGGCATGCATTGGTGTTGCAGGGCATGAATCAAAGTATAGCTACCAATAACGATGCGAGTTTGAAGACCAACATTGGCTGTAGGAAGGATGGCAGGTACATTCTTGGTGCTAAGTTGAGTCTTATCTTACTTGTCAGGTTGATATTGGAAAATCCGGTGTATGCACCTTGAGGACTAACTTAAGTATGTGCTTTTAACATAAGAAAATAAGAGGCATTCAACTATGGGAACGTGTTGACTATGCTTCATAATGTGTTTAGAGCCTATGCTGTGATGTGATATTTTATACATCGGTATTTACCTTCTAAAAAGAATTCTCTTAAAATAAGTACAATTCTACCATGTCGTGTCATTTGTATTGTTATTTTGTGTGTGTTAGAATGAGTTGACCAAGTCGTATTGACAACCTAGCAAATGAGTGTTTGTATTGTCATCTTGTGACTTCTGGATGTCGGTTTTGAGTTAGGAACTGTCATGAATATCTCATACAATTGACAATATATTAGACACGAATGATGGAGTAAACTAGTGGGTTCAATCGATATGACTTTTCTAGTCATGGGATATGTTTAGTTAGTATAAGAACGACATTTTATGCATCATAGAAGCAACCCACGCCCTATAAGAAACGAACAACTTGGCTGGCTAGTATTATTATTGGAAAGTATACTTTCTTTTGATCCAATATTTAAACGTGATGTTTGAGAGACAACTAAGGAAAGGTCCCACAGAACAAAGAAAGGGGTTAAAAAGTCATGGTAGAATGATTTAGAAAGTTGAAAATAGACCAAAAACATCACATTACAAAGCATCATAGCATGTGATCTGTTGAAGTTGAATGATCACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAACTTAAATCAAAGTAATTGGATTGAGTTGTGAAGTGGGGGCCATGTGATTACAAATATATCATCTCATTTGATTCATATCCAAAGCAACAGATCAAGCCTTAGTTTGTGTCTTTGTTTTTTTCTAATTCTAGTTTCAAACTGAAGGCCAATGTGTTATGTGTGTGCCACTTTTCTTGGTCAAATTACCTCTTTTTCCTCTCTTAATTGTCTACATGATCTGGTTGTTGCTATGTCAATGCTCCAATTATTTTTTACTTTGAATTTTTTTTTGTAGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAAATTAAAGGAGTTAAATCGTCACTTCCAGGGACTAAGACATTAATTAATGCAGGTATAAGGACCAAAGGTATAATTTGACCTATTTTTTTCTGCCTCTAATTTCAACTATATTTATATTAATTTAAGGTTAAATTAAAAAAACTATAAAGT

mRNA sequence

ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACTAATTCACTAGTTTTGGAGCTAGATAACATGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAAATTAAAGGAGTTAAATCGTCACTTCCAGGGACTAAGACATTAATTAATGCAGGTATAAGGACCAAAGGTATAATTTGACCTATTTTTTTCTGCCTCTAATTTCAACTATATTTATATTAATTTAAGGTTAAATTAAAAAAACTATAAAGT

Coding sequence (CDS)

ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACTAATTCACTAGTTTTGGAGCTAGATAACATGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAA

Protein sequence

MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLGFSTRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFLIESLRVYPLCYNQVGFPGLNCFKF

Homology

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: XP_004146135.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sativus] >XP_011650296.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sativus] >XP_011650297.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 7.1e-15
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQTFPDEVESYREIRA+SAAE +RIAQAQSMLPNGDMK+
Sbjct: 137 GLRKHLLEELEQTFPDEVESYREIRAASAAEAKRIAQAQSMLPNGDMKV 185

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: XP_008448559.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo] >XP_008448560.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo] >XP_008448561.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 7.1e-15
Identity = 84/185 (45.41%), Postives = 88/185 (47.57%), Query Frame = 0


Query: 1   MDLAQNASXXXXXXXXXXXXSVINDTSALTSVDDSNPT---------------------- 60
           MD AQN  XXXXXXXXXXXXSVINDTS  T+VDDS                         
Sbjct: 1   MDSAQNXXXXXXXXXXXXXXSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: KGN55669.1 (Nut2 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 7.1e-15
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQTFPDEVESYREIRA+SAAE +RIAQAQSMLPNGDMK+
Sbjct: 197 GLRKHLLEELEQTFPDEVESYREIRAASAAEAKRIAQAQSMLPNGDMKV 245

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: CAN83497.1 (hypothetical protein VITISV_026967 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 9.3e-15
Identity = 42/53 (79.25%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 46  DNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLY 99
           D MGLR+HLLEELEQ FPDEVESYREIRA+SAAE++R+AQAQS+LPNGD+K++
Sbjct: 145 DTMGLRRHLLEELEQAFPDEVESYREIRAASAAESKRLAQAQSVLPNGDLKIF 197

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: XP_023910486.1 (mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910487.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910490.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910491.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910492.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910493.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >XP_023910494.1 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus suber] >POF12615.1 isoform 2 of mediator of rna polymerase ii transcription subunit 10b [Quercus suber])

HSP 1 Score: 90.1 bits (222), Expect = 9.3e-15
Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQTFPDEVESYREIRA+SAAE++R+AQAQSMLPNGDMK+
Sbjct: 138 GLRKHLLEELEQTFPDEVESYREIRAASAAESKRLAQAQSMLPNGDMKV 186

[Close]

BLAST of Carg16270 vs. TAIR10
Match: AT5G41910.1 (Mediator complex, subunit Med10)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQ FPDEV+ YR+IRAS AAE +R+AQ QS+LPNGD K+
Sbjct: 134 GLRKHLLEELEQAFPDEVDRYRDIRASYAAEAKRLAQTQSVLPNGDAKV 182

[Close]

BLAST of Carg16270 vs. TAIR10
Match: AT1G26665.2 (Mediator complex, subunit Med10)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 50  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           LRKH+LEELEQ FPDEV+ YREIRASSAA T+R+AQ+QS+LPNGD K+
Sbjct: 138 LRKHILEELEQNFPDEVDMYREIRASSAAVTKRLAQSQSVLPNGDAKV 185

[Close]

BLAST of Carg16270 vs. Swiss-Prot
Match: sp|Q9FHZ2|MD10A_ARATH (Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana OX=3702 GN=MED10A PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-13
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQ FPDEV+ YR+IRAS AAE +R+AQ QS+LPNGD K+
Sbjct: 134 GLRKHLLEELEQAFPDEVDRYRDIRASYAAEAKRLAQTQSVLPNGDAKV 182

[Close]

BLAST of Carg16270 vs. Swiss-Prot
Match: sp|F4HPA7|MD10B_ARATH (Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana OX=3702 GN=MED10B PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-13
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 50  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           LRKH+LEELEQ FPDEV+ YREIRASSAA T+R+AQ+QS+LPNGD K+
Sbjct: 138 LRKHILEELEQNFPDEVDMYREIRASSAAVTKRLAQSQSVLPNGDAKV 185

[Close]

BLAST of Carg16270 vs. TrEMBL
Match: tr|A0A1S3BJY3|A0A1S3BJY3_CUCME (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 GN=LOC103490703 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15
Identity = 84/185 (45.41%), Postives = 88/185 (47.57%), Query Frame = 0


Query: 1   MDLAQNASXXXXXXXXXXXXSVINDTSALTSVDDSNPT---------------------- 60
           MD AQN  XXXXXXXXXXXXSVINDTS  T+VDDS                         
Sbjct: 1   MDSAQNXXXXXXXXXXXXXXSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

[Close]

BLAST of Carg16270 vs. TrEMBL
Match: tr|A0A0A0L3Q2|A0A0A0L3Q2_CUCSA (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis sativus OX=3659 GN=MED10 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQTFPDEVESYREIRA+SAAE +RIAQAQSMLPNGDMK+
Sbjct: 197 GLRKHLLEELEQTFPDEVESYREIRAASAAEAKRIAQAQSMLPNGDMKV 245

[Close]

BLAST of Carg16270 vs. TrEMBL
Match: tr|A0A2P4M549|A0A2P4M549_QUESU (Mediator of RNA polymerase II transcription subunit 10 OS=Quercus suber OX=58331 GN=MED10 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15
Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQTFPDEVESYREIRA+SAAE++R+AQAQSMLPNGDMK+
Sbjct: 138 GLRKHLLEELEQTFPDEVESYREIRAASAAESKRLAQAQSMLPNGDMKV 186

[Close]

BLAST of Carg16270 vs. TrEMBL
Match: tr|A5BR75|A5BR75_VITVI (Mediator of RNA polymerase II transcription subunit 10 OS=Vitis vinifera OX=29760 GN=MED10 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15
Identity = 42/53 (79.25%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 46  DNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLY 99
           D MGLR+HLLEELEQ FPDEVESYREIRA+SAAE++R+AQAQS+LPNGD+K++
Sbjct: 145 DTMGLRRHLLEELEQAFPDEVESYREIRAASAAESKRLAQAQSVLPNGDLKIF 197

[Close]

BLAST of Carg16270 vs. TrEMBL
Match: tr|A0A2P4JQN7|A0A2P4JQN7_QUESU (Mediator of RNA polymerase II transcription subunit 10 OS=Quercus suber OX=58331 GN=MED10 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 43/49 (87.76%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHL+EELEQTFPDEVESYREIRA+SAAE++R+AQAQSMLPNGDMK+
Sbjct: 138 GLRKHLMEELEQTFPDEVESYREIRAASAAESKRLAQAQSMLPNGDMKV 186

The following BLAST results are available for this feature:

BLAST of Carg16270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146135.1	7.1e-15	91.84	PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sati...	[more]
XP_008448559.1	7.1e-15	45.41	PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [C...	[more]
KGN55669.1	7.1e-15	91.84	Nut2 [Cucumis sativus]	[more]
CAN83497.1	9.3e-15	79.25	hypothetical protein VITISV_026967 [Vitis vinifera]	[more]
XP_023910486.1	9.3e-15	89.80	mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Quercus...	[more]

BLAST of Carg16270 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41910.1	1.5e-14	75.51	Mediator complex, subunit Med10	[more]
AT1G26665.2	1.9e-14	77.08	Mediator complex, subunit Med10	[more]

BLAST of Carg16270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FHZ2\|MD10A_ARATH	2.7e-13	75.51	Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana ...	[more]
sp\|F4HPA7\|MD10B_ARATH	3.5e-13	77.08	Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana ...	[more]

BLAST of Carg16270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJY3\|A0A1S3BJY3_CUCME	4.7e-15	45.41	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A0A0L3Q2\|A0A0A0L3Q2_CUCSA	4.7e-15	91.84	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis sativus OX=365...	[more]
tr\|A0A2P4M549\|A0A2P4M549_QUESU	6.1e-15	89.80	Mediator of RNA polymerase II transcription subunit 10 OS=Quercus suber OX=58331...	[more]
tr\|A5BR75\|A5BR75_VITVI	6.1e-15	79.25	Mediator of RNA polymerase II transcription subunit 10 OS=Vitis vinifera OX=2976...	[more]
tr\|A0A2P4JQN7\|A0A2P4JQN7_QUESU	1.0e-14	87.76	Mediator of RNA polymerase II transcription subunit 10 OS=Quercus suber OX=58331...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16270-RA	Carg16270-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16270	Cla008889	Watermelon (97103) v1	carwmB0678
Carg16270	Csa3G002880	Cucumber (Chinese Long) v2	carcuB0701
Carg16270	MELO3C013773	Melon (DHL92) v3.5.1	carmeB0681
Carg16270	ClCG10G000810	Watermelon (Charleston Gray)	carwcgB0655
Carg16270	CSPI03G00820	Wild cucumber (PI 183967)	carcpiB0713
Carg16270	Cucsa.322550	Cucumber (Gy14) v1	carcgyB0759
Carg16270	CmaCh06G005840	Cucurbita maxima (Rimu)	carcmaB0957
Carg16270	CmaCh16G012300	Cucurbita maxima (Rimu)	carcmaB0956
Carg16270	CmoCh06G005880	Cucurbita moschata (Rifu)	carcmoB0933
Carg16270	Lsi07G011100	Bottle gourd (USVL1VR-Ls)	carlsiB621
Carg16270	Cp4.1LG08g09230	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16270	Cp4.1LG14g10160	Cucurbita pepo (Zucchini)	carcpeB0955
Carg16270	MELO3C013773.2	Melon (DHL92) v3.6.1	carmedB0693
Carg16270	CsaV3_3G000870	Cucumber (Chinese Long) v3	carcucB0715
Carg16270	BhiUN179G24	Wax gourd	carwgoB0798

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16270	Carg19482	Silver-seed gourd	carcarB442

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16270	Cucumber (Gy14) v2	carcgybB0677
Carg16270	Cucurbita moschata (Rifu)	carcmoB0932
Carg16270	Watermelon (97103) v2	carwmbB0705