Lsi07G011100 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Mediator of RNA polymerase II transcription subunit 10
Location	chr07 : 16524291 .. 16529135 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGCGGTGGCAATGGATCCGTCATCAATGATACGTCAGCTTCAACCACAGTGGATGATTCAAAGCAGAACTTGAACCAAGTAATCAACTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCCAACTTCAATGCCGCCTATCAGCTGCCTCTTTTACAGCGCCTGTATGCCCAGTTTTGCTTCATCTAAGATCTAATTCGTTCTTTATTCACTCCTTATTTCATTCTATACCAGTGATGTGTTTCTTGATTTTGCAGCAATTCTCTAGTTTTGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCACCATCCAGGTCCCTATGGAGGTTCTTAAGTGAGTGTTTGTACGCCTATTCTGATCTCTAGCTTTGCAAGCTTTTTAATTTTTTAATTTTAATTTTTTTAACTCTTCTATTTTTTCGTGGTCCACTTCTTACTTTTCCTTTGATTAGTTTGATCGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCCTTCAAGGTAGTCCTTACAGCTCCATGTGGCAGGCTGTTAAAAATCTATCTGTATCTTCTTTTTATCTTTGTTTCCATAAACATATATACATCTCTGTTTCCTATATAAAAAAAATAAATTCACGAAAATCTTTATTGAATGTTGTCCCACTTACTACATTCAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTCCCTGATGAAGTCGAGTCTTACAGAGAAATTCGTGCTGCTTCTGCTGCCGTGAGTTGAATTTTTTTCAATTTTATCTCTACCTTCAAAATTTTCTCAGAATGATTGGATAAGTATATTCATTTTCCAACTTATCAAAACCATTTTCTTGACTTTTATGGATTAATTTTTACTTTATCTATAACCATAAGCTAGATGTATTTTCAAAGTCTGTATCATCCTTTCCTCAGGTAATTGTTGCTTTATTTTAAAGTTTCTATTGGTTTCTTTTATTGTCTAAGACTAAGAGGAAACAAATAACAATTTTTTTTTCTGTGAGATTGAATTCTGCTTGCTTAAAAACTACTTTCTGGTTATTTTTATATACATCTCTCAAGCCAATTTTACCTCGAAATATTTTCCTTTGTGAATGAAATGGTTTAACAAATTTAGAATCAGATTAAATTACTTTCTCTCCTAGTTTCTCAAACTAGCTTATGTGAAGTAAAGAACTTGGAGTACTTCCTGCCCGTAATTCTATAACTATCCTTCCACTTTTGGTGCAAGATTGATGGTATGTTTAGAAACCATGATAGTAATCAATGATCACAGCCCTGCTCATTCCAATTGGCGTCTCTGTATAGATGCTACTAGTCTAATGCTGCCGGCCTCTTGAGCACGAGTCCTTTCCTTGTGACTTAGATATAACAAATTTGATAAGGAGCTCAAATTTTATTGCAATATCAGTGAAATACACAAGTAATAGCCTCTCAAGAGGGTTAGCTCTCCCCTGCAAAAATTTCCCAAGTGATCGCTGAATTCAAAATTTGCCTCTCACTGTTTATAACCATTTCTATTACGTTCATTGTCTGATGACTAATTTACACATTTAGAATTCTAGTATTACTCTACCTATGAAACATGAAACACACCTTGTTCTCTAAAGGTTTGGATCATGTATTGTTTAGGACCATCTATACTTACTACTTCCATCTTGCTTGAGATAAGAGGTTTGTCTACAATCATTGCTTAAATATCTTCCGTTAGATGGGGACTAGACTGTCAAATGCTTTCCTGTCTTCAAGTCAGTTGGCCTTTTAATTTTTCACCATGGATTGGTGGCTCTCTTGATAAATATATGCAAGAGTAACTTAACTCATGCCCATAAGAGCTCATTTCATCTTCACCCATCTTTTCCTGTTTGCTCCTTTCATTGTGCTGTCTAGTTGAATTGTTTGATTTCTCCCATTCCACTATCAATCCAACCCATAATATTGGCAAAATGTATGGGAAAAAGAAGCACAAAAACTGTGCCAATATTTTCCTATTTTCCAGATCCTTTCCTGAGATCAAATGACTTGGATATCAATTTGGTTGAAACCTGATCCTGAGATTGAGAAGAAAATGGAAGATAAAACTGAATTGCTATACTAAAATATGTGGGCAATAACCTTTTGAGACGACTGTTCCTTTGCTTCTACCTTTACTAACAAATTCATCATCTTATAGTATTGTGCGAGTCTCGTCTCAAGTCCTAGCAGAATCCTTATTTGGACAGCCCATAGCATGTATGAATCTGGAAAGCCAGAAACTTCTACTTTTTTTAAGCAGCTATGTTGTGGGATCTTTTGGCTAGTGAATCAATTATAACAATAAAAGGCATAAGGATATACTATAGAGAAAACTCTTGATTTTGATTTTTCTTTTATTAATTTCACGTTATTCATCAAGATTACCTTAAAAGTACATAGTTCGTTATGTTTTTATGTTTGTGGGCTCAGATTTTAATCTTGTTGTAACAAATGTAGGAAGCAAAAAGGATAGCACAAGCACAAAGTATGTTACCAAATGGGGATATGAAGGTTAAGATGGAGGTTTAAGTGCCTTCTGAGATAATTATCAGGTCTTTGAAGTTCTTTGCTTGCCATTATTCTTTATTATGTCTTCAGCATATAATCATATTGATTGGCCGGCACATATCACATGATTTTAGTCTCATTCAAGGGATTGATAATGGAATAACATAATTCTTCTTTGTATATATCATCCTCTATTCTATTATTGTCTGTAACCTTGCTGGGAGATAGCATTGTGCTTCCCATAGTTTGGGTTCCTCTTGATCTGTATCCATCATTTTAGTACTTTGATTTCAAGTTTCTTGAGCATATAGAAATGTGTGTTTCAGTGCTTTAGGAATTGTGAATCATTATGTGACTTACTAGATTTATATTTAAAACACGAGGTTGACATCATAAGGTTAACCTGTGCGTAGTTTAACGAATTAATTAAGATATTATACATCTTTGGCATAGTTTAACCGATTAATTAAGACATGATACATCTTTCTTAAAGTTGAATGTTTGAATCTCTATTATGTCAGGGAGTTCGTTCTTATTTTATACTCAATTAAGTCGAAAGAACCTTCTCAAGATTGAATTTTCTCGCTCAAAATAGGTGAGGTGGCTGTATCTTGGTTTCTCTAGTCAAGACTGCGGCAGACGACGTGGGATTTGAAGACGGCTAATGAATTATGATTTCAAAAGCCACACAAGATGAAACATTTAACTGGAACTATCGTATTATACTCATATTCATTGGGCCAGTCAAAGCGGAGAAGAATCACACAATCCTCAAAGAACTTTGGATTTTCTGGCAGTATCAACCCCCCATTCAGTGTGTCTGATTCAAGTTTTATTTTACTTTTTACTTGGTAAATGAATCTTTCCGCAACTGGATTCTCACTTTTCTGTTAATAAGTATTGTAAATTCGTATTAATTCCTTGCCTCATCTCAGTCTCTTTGAATTTTAACTCTTTAACCATGCTGAATATGATGAGGGTTAAACTATATAAACTCTGGTTTCAATTATGACTTTAGACTTAAAACGGAAAATGGAAATGCTTTAACACGCAATTAATCAGGTATGACAACCTCAAAAATAGTAAAGACCCCAAAATATTTTGTGAAGAAGTGTCCATAGTGTTTTAACCCTTGATGGCTCCGGAGATTCTCTGGAGTCGCTCGCCACCACCTTAGTCCTCATTTATGCTCGCTCCAAGAGGTGTCAGAGTTAATCTTCCAGCTTCTTTGCAGCGTCTTTGCTGACGGTGGGCACCAGGAACCTTGACTCAGGTGGCTCTCCAATCTTGGCATAATCTGGTCAGTAAACCCTTTTATCTCCTTCACAAGCAATAATGTTATTCGTAAATAGTTTTATGAATTAATCGTTAAAGTTCGGTGTGCCTTGTTGAGTTTGATTTGATTCCTGTGATTCCGTAGAACTCCAAAAGGATTATTATTGATTTCTTCAAATCTGTCCGAGTCTGAGTGCTGAAAAGGTTTTGGATCCATATGGAGTTTGATATTTTGCAGCTTCACATAACATGAATTGTGGATAATGGCCTGGGAATCCTGTTGGATGAAATTTTCCATGATCAAAGCTTCCTTTCACACATCCAAGAGAAACCCCAACCCATTTTCCTTCAAAACTATATTTGACAGGCATTGCCTTACAGTTTCCCTTTCTGTTGATCCAAGAATCTTGCTCAATCATATGTGTCTTCCACTCCCCACTTTCCAGCCTTGGTCTTTTTAAGAAAGCTCTCTCCTCCACACACTACTTCTCCAAATCAAGGAGAGATTGTTCCTCAAAGACGATTTTCGAAAAATCGCTTTGAAGTACTTCCCTTTTAGCATCTAGTTAAAAGACTATTGGTTTGGAATTAGAATGTTTACATGAGTACAACATTAACCTTTTCCAACTCCGCCAGTGTGCTTTATCCTTGCCTTTGACATGTTCCATCAGATTTGAACACATATTTTATTATCTCTTCCATAGTGAATGTAGGAGTTGCTTGTGCTCTAGCTTTGATGAGAATTTCCTTTCCCGCTGAGAAAAAAAAGGTGCCCTTTTAGCTTTGTCGGACATAATCTACATGAAGTCAGAAGTGCAAGCAAGAAAGATGTGATTATGTCATTTGGAACCCTAAGTATAGTCAGAGTAAAAGTGGACTTTTTAGGGAGAGTCATACATAGACCCAAAATTTGAGCG

mRNA sequence

ATGGATTCAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGCGGTGGCAATGGATCCGTCATCAATGATACGTCAGCTTCAACCACAGTGGATGATTCAAAGCAGAACTTGAACCAAGTAATCAACTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCCAACTTCAATGCCGCCTATCAGCTGCCTCTTTTACAGCGCCTCAATTCTCTAGTTTTGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCACCATCCAGGTCCCTATGGAGGTTCTTAATTTGATCGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCCTTCAAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTCCCTGATGAAGTCGAGTCTTACAGAGAAATTCGTGCTGCTTCTGCTGCCGTGAGTTGAATTTTTTTCAATTTTATCTCTACCTTCAAAATTTTCTCAGAATGATTGGATAAGTATATTCATTTTCCAACTTATCAAAACCATTTTCTTGACTTTTATGGATTAATTTTTACTTTATCTATAACCATAAGCTAGATGTATTTTCAAAGTCTGTATCATCCTTTCCTCAGGTAATTGTTGCTTTATTTTAAAGTTTCTATTGGTTTCTTTTATTGTCTAAGACTAAGAGGAAACAAATAACAATTTTTTTTTCTGTGAGATTGAATTCTGCTTGCTTAAAAACTACTTTCTGGTTATTTTTATATACATCTCTCAAGCCAATTTTACCTCGAAATATTTTCCTTTGTGAATGAAATGGTTTAACAAATTTAGAATCAGATTAAATTACTTTCTCTCCTAGTTTCTCAAACTAGCTTATGTGAAGTAAAGAACTTGGAGTACTTCCTGCCCGTAATTCTATAACTATCCTTCCACTTTTGGTGCAAGATTGATGGTATGTTTAGAAACCATGATAGTAATCAATGATCACAGCCCTGCTCATTCCAATTGGCGTCTCTGTATAGATGCTACTAGTCTAATGCTGCCGGCCTCTTGAGCACGAGTCCTTTCCTTGTGACTTAGATATAACAAATTTGATAAGGAGCTCAAATTTTATTGCAATATCAGTGAAATACACAAGTAATAGCCTCTCAAGAGGGTTAGCTCTCCCCTGCAAAAATTTCCCAAGTGATCGCTGAATTCAAAATTTGCCTCTCACTGTTTATAACCATTTCTATTACGTTCATTGTCTGATGACTAATTTACACATTTAGAATTCTAGTATTACTCTACCTATGAAACATGAAACACACCTTGTTCTCTAAAGGTTTGGATCATGTATTGTTTAGGACCATCTATACTTACTACTTCCATCTTGCTTGAGATAAGAGGTTTGTCTACAATCATTGCTTAAATATCTTCCGTTAGATGGGGACTAGACTGTCAAATGCTTTCCTGTCTTCAAGTCAGTTGGCCTTTTAATTTTTCACCATGGATTGGTGGCTCTCTTGATAAATATATGCAAGAGTAACTTAACTCATGCCCATAAGAGCTCATTTCATCTTCACCCATCTTTTCCTGTTTGCTCCTTTCATTGTGCTGTCTAGTTGAATTGTTTGATTTCTCCCATTCCACTATCAATCCAACCCATAATATTGGCAAAATGTATGGGAAAAAGAAGCACAAAAACTGTGCCAATATTTTCCTATTTTCCAGATCCTTTCCTGAGATCAAATGACTTGGATATCAATTTGGTTGAAACCTGATCCTGAGATTGAGAAGAAAATGGAAGATAAAACTGAATTGCTATACTAAAATATGTGGGCAATAACCTTTTGAGACGACTGTTCCTTTGCTTCTACCTTTACTAACAAATTCATCATCTTATAGTATTGTGCGAGTCTCGTCTCAAGTCCTAGCAGAATCCTTATTTGGACAGCCCATAGCATGTATGAATCTGGAAAGCCAGAAACTTCTACTTTTTTTAAGCAGCTATGTTGTGGGATCTTTTGGCTAGTGAATCAATTATAACAATAAAAGGCATAAGGATATACTATAGAGAAAACTCTTGATTTTGATTTTTCTTTTATTAATTTCACGTTATTCATCAAGATTACCTTAAAAGTACATAGTTCGTTATGTTTTTATGTTTGTGGGCTCAGATTTTAATCTTGTTGTAACAAATGTAGGAAGCAAAAAGGATAGCACAAGCACAAAGTATGTTACCAAATGGGGATATGAAGGTTAAGATGGAGGTTTAAGTGCCTTCTGAGATAATTATCAGGTGAGGTGGCTGTATCTTGGTTTCTCTAGTCAAGACTGCGGCAGACGACGTGGGATTTGAAGACGGCTAATGAATTATGATTTCAAAAGCCACACAAGATGAAACATTTAACTGGAACTATCGTATTATACTCATATTCATTGGGCCAGTCAAAGCGGAGAAGAATCACACAATCCTCAAAGAACTTTGGATTTTCTGGCAGTATCAACCCCCCATTCAGTGTGTCTGATTCAAGTTTTATTTTACTTTTTACTTGCGTCTTTGCTGACGGTGGGCACCAGGAACCTTGACTCAGGTGGCTCTCCAATCTTGGCATAATCTGGTCAGTAAACCCTTTTATCTCCTTCACAAGCAATAATGTTATTCGTAAATAGTTTTATGAATTAATCGTTAAAGTTCGGTGTGCCTTGTTGAGTTTGATTTGATTCCTGTGATTCCGTAGAACTCCAAAAGGATTATTATTGATTTCTTCAAATCTGTCCGAGTCTGAGTGCTGAAAAGGTTTTGGATCCATATGGAGTTTGATATTTTGCAGCTTCACATAACATGAATTGTGGATAATGGCCTGGGAATCCTGTTGGATGAAATTTTCCATGATCAAAGCTTCCTTTCACACATCCAAGAGAAACCCCAACCCATTTTCCTTCAAAACTATATTTGACAGGCATTGCCTTACAGTTTCCCTTTCTGTTGATCCAAGAATCTTGCTCAATCATATGTGTCTTCCACTCCCCACTTTCCAGCCTTGGTCTTTTTAAGAAAGCTCTCTCCTCCACACACTACTTCTCCAAATCAAGGAGAGATTGTTCCTCAAAGACGATTTTCGAAAAATCGCTTTGAAGTACTTCCCTTTTAGCATCTAGTTAAAAGACTATTGGTTTGGAATTAGAATGTTTACATGAGTACAACATTAACCTTTTCCAACTCCGCCAGTGTGCTTTATCCTTGCCTTTGACATGTTCCATCAGATTTGAACACATATTTTATTATCTCTTCCATAGTGAATGTAGGAGTTGCTTGTGCTCTAGCTTTGATGAGAATTTCCTTTCCCGCTGAGAAAAAAAAGGTGCCCTTTTAGCTTTGTCGGACATAATCTACATGAAGTCAGAAGTGCAAGCAAGAAAGATGTGATTATGTCATTTGGAACCCTAAGTATAGTCAGAGTAAAAGTGGACTTTTTAGGGAGAGTCATACATAGACCCAAAATTTGAGCG

Coding sequence (CDS)

ATGGATTCAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGCGGTGGCAATGGATCCGTCATCAATGATACGTCAGCTTCAACCACAGTGGATGATTCAAAGCAGAACTTGAACCAAGTAATCAACTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCCAACTTCAATGCCGCCTATCAGCTGCCTCTTTTACAGCGCCTCAATTCTCTAGTTTTGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCACCATCCAGGTCCCTATGGAGGTTCTTAATTTGATCGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCCTTCAAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTCCCTGATGAAGTCGAGTCTTACAGAGAAATTCGTGCTGCTTCTGCTGCCGTGAGTTGA

Protein sequence

MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS

Homology

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BLAST of Lsi07G011100 vs. Swiss-Prot
Match: MD10B_ARATH (Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana GN=MED10B PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.9e-59
Identity = 128/172 (74.42%), Postives = 145/172 (84.30%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSV---IND-TSASTTVDDSKQNLNQVINSIQKTLGILHQL 60
           MD  QN S  AG GGS  NG++    ND TS  T  DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLV+ELDNM KLSEKC IQ+PMEVLNLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           VLNSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAAV+
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVT 168

[Close]

BLAST of Lsi07G011100 vs. Swiss-Prot
Match: MD10A_ARATH (Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana GN=MED10A PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-52
Identity = 118/167 (70.66%), Postives = 135/167 (80.84%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MD  QN  + AG G    NGS+  + +A  TVDDS + LNQ+INS QK L +LHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDVLN- 120
           S+F  A QL LLQRLNSLV+ELDNM KLS+KC IQVP+EVLNLIDDGKNPDEFT+DVLN 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 121 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AA
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

[Close]

BLAST of Lsi07G011100 vs. Swiss-Prot
Match: MED10_AEDAE (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-17
Identity = 42/123 (34.15%), Postives = 75/123 (60.98%), Query Frame = 1


Query: 39  LNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPM 98
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  +  + VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPL 64

Query: 99  EVLNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 158
           EV + ID G+NP  +T+D ++  + KN+  KGK D+++  + +L++EL++TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYK 124

Query: 159 EIR 162
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of Lsi07G011100 vs. Swiss-Prot
Match: MED10_ANOGA (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-16
Identity = 42/123 (34.15%), Postives = 74/123 (60.16%), Query Frame = 1


Query: 39  LNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPM 98
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  +  + VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPL 64

Query: 99  EVLNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 158
           EV + ID G+NP  +T+D ++  + KN+  KGK D+++  + +L++EL +TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYK 124

Query: 159 EIR 162
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of Lsi07G011100 vs. Swiss-Prot
Match: MED10_MOUSE (Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-15
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 1


Query: 46  IQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC-TIQVPMEVLNLI 105
           ++K +  + QL + VS+F  + Q  L Q+LN +V  L ++ K  ++   I VP+EV   I
Sbjct: 12  LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query: 106 DDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIR 162
           D G+NP  +T++ L   +AKN+  KGK D  K  +  L++EL + FP+++  YR IR
Sbjct: 72  DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

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BLAST of Lsi07G011100 vs. TrEMBL
Match: A0A0A0L3Q2_CUCSA (Nut2 OS=Cucumis sativus GN=Csa_3G002880 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.6e-79
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDT  STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 61  MDSAQNASSAAGTGGSGGNGSVINDTPVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 120

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDVLNS
Sbjct: 121 SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 180

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 181 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 226

[Close]

BLAST of Lsi07G011100 vs. TrEMBL
Match: A0A061G3A8_THECC (Mediator complex, subunit Med10 isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_015646 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-64
Identity = 142/170 (83.53%), Postives = 148/170 (87.06%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASTTVDDSKQNLNQVINSIQKTLGILHQLN 60
           MDS+Q  SS  GTGGSGGNG V    NDT  +T  DD KQNL QVINSIQKTLG+LHQL 
Sbjct: 1   MDSSQ--SSTLGTGGSGGNGIVSSQTNDTRTATPNDDPKQNLTQVINSIQKTLGLLHQLY 60

Query: 61  LTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDV 120
           LTVS+FNAA QLPLLQRLNSLV ELDNM KLSEKC IQVPMEVLNLIDDGKNPDEFTRDV
Sbjct: 61  LTVSSFNAASQLPLLQRLNSLVSELDNMAKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDV 120

Query: 121 LNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           LNSCIAKNQ TKGKTDAFK LRKHLLEELEQTFPDEVESYREIRA+SAA+
Sbjct: 121 LNSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYREIRASSAAI 168

[Close]

BLAST of Lsi07G011100 vs. TrEMBL
Match: B9GK75_POPTR (RNA polymerase II mediator complex family protein OS=Populus trichocarpa GN=POPTR_0001s11370g PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.4e-64
Identity = 139/169 (82.25%), Postives = 149/169 (88.17%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASTTVDDSKQNLNQVINSIQKTLGILHQLN 60
           MD +QN  +A GTGG GGNG +   +NDT+A+T VDD KQNLNQVINSIQKTLG+LHQL 
Sbjct: 1   MDLSQN--TALGTGGIGGNGMLAAPVNDTAAATAVDDPKQNLNQVINSIQKTLGLLHQLY 60

Query: 61  LTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDV 120
           LTVS+FN A QLPLLQRLN LV ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEF+RDV
Sbjct: 61  LTVSSFNTASQLPLLQRLNGLVTELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFSRDV 120

Query: 121 LNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +NSCIAKNQ TKGKTDAFK LRKHLLEELEQTFPDEVESYREIRA SAA
Sbjct: 121 INSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYREIRAMSAA 167

[Close]

BLAST of Lsi07G011100 vs. TrEMBL
Match: A0A061G3W5_THECC (Mediator complex, subunit Med10 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_015646 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.2e-64
Identity = 142/170 (83.53%), Postives = 148/170 (87.06%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASTTVDDSKQNLNQVINSIQKTLGILHQLN 60
           MDS+Q  SS  GTGGSGGNG V    NDT  +T  DD KQNL QVINSIQKTLG+LHQL 
Sbjct: 1   MDSSQ--SSTLGTGGSGGNGIVSSQTNDTRTATPNDDPKQNLTQVINSIQKTLGLLHQLY 60

Query: 61  LTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDV 120
           LTVS+FNAA QLPLLQRLNSLV ELDNM KLSEKC IQVPMEVLNLIDDGKNPDEFTRDV
Sbjct: 61  LTVSSFNAASQLPLLQRLNSLVSELDNMAKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDV 120

Query: 121 LNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           LNSCIAKNQ TKGKTDAFK LRKHLLEELEQTFPDEVESYREIRA+SAA+
Sbjct: 121 LNSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYREIRASSAAL 168

[Close]

BLAST of Lsi07G011100 vs. TrEMBL
Match: A0A061G2T0_THECC (Mediator complex, subunit Med10 isoform 2 OS=Theobroma cacao GN=TCM_015646 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.2e-64
Identity = 142/169 (84.02%), Postives = 147/169 (86.98%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASTTVDDSKQNLNQVINSIQKTLGILHQLN 60
           MDS+Q  SS  GTGGSGGNG V    NDT  +T  DD KQNL QVINSIQKTLG+LHQL 
Sbjct: 1   MDSSQ--SSTLGTGGSGGNGIVSSQTNDTRTATPNDDPKQNLTQVINSIQKTLGLLHQLY 60

Query: 61  LTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDV 120
           LTVS+FNAA QLPLLQRLNSLV ELDNM KLSEKC IQVPMEVLNLIDDGKNPDEFTRDV
Sbjct: 61  LTVSSFNAASQLPLLQRLNSLVSELDNMAKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDV 120

Query: 121 LNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           LNSCIAKNQ TKGKTDAFK LRKHLLEELEQTFPDEVESYREIRA+SAA
Sbjct: 121 LNSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYREIRASSAA 167

[Close]

BLAST of Lsi07G011100 vs. TAIR10
Match: AT1G26665.2 (AT1G26665.2 Mediator complex, subunit Med10)

HSP 1 Score: 227.6 bits (579), Expect = 5.6e-60
Identity = 128/172 (74.42%), Postives = 145/172 (84.30%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSV---IND-TSASTTVDDSKQNLNQVINSIQKTLGILHQL 60
           MD  QN S  AG GGS  NG++    ND TS  T  DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLV+ELDNM KLSEKC IQ+PMEVLNLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           VLNSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAAV+
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVT 168

[Close]

BLAST of Lsi07G011100 vs. TAIR10
Match: AT5G41910.1 (AT5G41910.1 Mediator complex, subunit Med10)

HSP 1 Score: 207.6 bits (527), Expect = 6.0e-54
Identity = 118/167 (70.66%), Postives = 135/167 (80.84%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MD  QN  + AG G    NGS+  + +A  TVDDS + LNQ+INS QK L +LHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDVLN- 120
           S+F  A QL LLQRLNSLV+ELDNM KLS+KC IQVP+EVLNLIDDGKNPDEFT+DVLN 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 121 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AA
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

[Close]

BLAST of Lsi07G011100 vs. NCBI nr
Match: gi|659095399|ref|XP_008448559.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 5.9e-80
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of Lsi07G011100 vs. NCBI nr
Match: gi|449456797|ref|XP_004146135.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.3e-79
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDT  STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTPVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of Lsi07G011100 vs. NCBI nr
Match: gi|700200536|gb|KGN55669.1| (Nut2 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.3e-79
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDT  STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 61  MDSAQNASSAAGTGGSGGNGSVINDTPVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 120

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDVLNS
Sbjct: 121 SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 180

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 181 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 226

[Close]

BLAST of Lsi07G011100 vs. NCBI nr
Match: gi|743842773|ref|XP_011026786.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like [Populus euphratica])

HSP 1 Score: 254.2 bits (648), Expect = 1.6e-64
Identity = 140/169 (82.84%), Postives = 149/169 (88.17%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASTTVDDSKQNLNQVINSIQKTLGILHQLN 60
           MD +QN  +A GTGGSGGNG +   +NDT+A+T VDD KQNLNQVINSIQKTLG+LHQL 
Sbjct: 1   MDLSQN--TALGTGGSGGNGMLATPVNDTAAATAVDDPKQNLNQVINSIQKTLGLLHQLY 60

Query: 61  LTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDV 120
           LTVS+FN A QLPLLQRLN LV ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDV
Sbjct: 61  LTVSSFNTASQLPLLQRLNGLVTELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDV 120

Query: 121 LNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +NSCIAKNQ TKGKTDAFK LRKHLLEELE TFPDEVESYREIRA SAA
Sbjct: 121 INSCIAKNQVTKGKTDAFKSLRKHLLEELELTFPDEVESYREIRAMSAA 167

[Close]

BLAST of Lsi07G011100 vs. NCBI nr
Match: gi|590675239|ref|XP_007039392.1| (Mediator complex, subunit Med10 isoform 4, partial [Theobroma cacao])

HSP 1 Score: 253.4 bits (646), Expect = 2.7e-64
Identity = 142/170 (83.53%), Postives = 148/170 (87.06%), Query Frame = 1


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASTTVDDSKQNLNQVINSIQKTLGILHQLN 60
           MDS+Q  SS  GTGGSGGNG V    NDT  +T  DD KQNL QVINSIQKTLG+LHQL 
Sbjct: 1   MDSSQ--SSTLGTGGSGGNGIVSSQTNDTRTATPNDDPKQNLTQVINSIQKTLGLLHQLY 60

Query: 61  LTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDV 120
           LTVS+FNAA QLPLLQRLNSLV ELDNM KLSEKC IQVPMEVLNLIDDGKNPDEFTRDV
Sbjct: 61  LTVSSFNAASQLPLLQRLNSLVSELDNMAKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDV 120

Query: 121 LNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           LNSCIAKNQ TKGKTDAFK LRKHLLEELEQTFPDEVESYREIRA+SAA+
Sbjct: 121 LNSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYREIRASSAAI 168

The following BLAST results are available for this feature:

BLAST of Lsi07G011100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD10B_ARATH	9.9e-59	74.42	Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana ...	[more]
MD10A_ARATH	1.1e-52	70.66	Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana ...	[more]
MED10_AEDAE	9.3e-17	34.15	Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10...	[more]
MED10_ANOGA	2.1e-16	34.15	Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=M...	[more]
MED10_MOUSE	8.7e-15	36.75	Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 ...	[more]

BLAST of Lsi07G011100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3Q2_CUCSA	1.6e-79	98.19	Nut2 OS=Cucumis sativus GN=Csa_3G002880 PE=4 SV=1	[more]
A0A061G3A8_THECC	1.9e-64	83.53	Mediator complex, subunit Med10 isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_0...	[more]
B9GK75_POPTR	2.4e-64	82.25	RNA polymerase II mediator complex family protein OS=Populus trichocarpa GN=POPT...	[more]
A0A061G3W5_THECC	3.2e-64	83.53	Mediator complex, subunit Med10 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_0...	[more]
A0A061G2T0_THECC	4.2e-64	84.02	Mediator complex, subunit Med10 isoform 2 OS=Theobroma cacao GN=TCM_015646 PE=4 ...	[more]

BLAST of Lsi07G011100 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26665.2	5.6e-60	74.42	Mediator complex, subunit Med10	[more]
AT5G41910.1	6.0e-54	70.66	Mediator complex, subunit Med10	[more]

BLAST of Lsi07G011100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095399\|ref\|XP_008448559.1\|	5.9e-80	98.80	PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis melo...	[more]
gi\|449456797\|ref\|XP_004146135.1\|	2.3e-79	98.19	PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Cucumis sati...	[more]
gi\|700200536\|gb\|KGN55669.1\|	2.3e-79	98.19	Nut2 [Cucumis sativus]	[more]
gi\|743842773\|ref\|XP_011026786.1\|	1.6e-64	82.84	PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like [Populus...	[more]
gi\|590675239\|ref\|XP_007039392.1\|	2.7e-64	83.53	Mediator complex, subunit Med10 isoform 4, partial [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR019145	Mediator_Med10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0019343	cysteine biosynthetic process via cystathionine
biological_process	GO:0019346	transsulfuration
biological_process	GO:0006534	cysteine metabolic process
biological_process	GO:0019458	methionine catabolic process via 2-oxobutanoate
biological_process	GO:0006730	one-carbon metabolic process
biological_process	GO:0051289	protein homotetramerization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
biological_process	GO:0071266	'de novo' L-methionine biosynthetic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005829	cytosol
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0004123	cystathionine gamma-lyase activity
molecular_function	GO:0018826	methionine gamma-lyase activity
molecular_function	GO:0003962	cystathionine gamma-synthase activity
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011100.1	Lsi07G011100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019145	Mediator complex, subunit Med10	PFAM	PF09748	Med10	coord: 45..158 score: 6.4
None	No IPR available	GENE3D	G3DSA:3.30.420.40		coord: 16..33 score: 5.2E-4coord: 72..127 score: 5.
None	No IPR available	PANTHER	PTHR13345	NUT2 AND UXT	coord: 33..168 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G011100	Csa3G002880	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011100	CSPI03G00820	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011100	Cucsa.322550	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011100	CmaCh16G012300	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011100	CmaCh06G005840	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011100	CmoCh16G012760	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011100	Cla008889	Watermelon (97103) v1	lsiwmB429
Lsi07G011100	MELO3C013773	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011100	ClCG10G000810	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011100	MELO3C013773.2	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G011100	Cla97C10G185390	Watermelon (97103) v2	lsiwmbB395
Lsi07G011100	BhiUN179G24	Wax gourd	lsiwgoB575
Lsi07G011100	Cp4.1LG08g09230	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011100	Cp4.1LG14g10160	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011100	CsGy3G000780	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011100	Carg19482	Silver-seed gourd	carlsiB389
Lsi07G011100	Carg16270	Silver-seed gourd	carlsiB621
Lsi07G011100	CsaV3_3G000870	Cucumber (Chinese Long) v3	cuclsiB250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011100	Cucurbita moschata (Rifu)	cmolsiB763