Carg16268 (gene) Silver-seed gourd

NameCarg16268
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionbeta-carotene isomerase D27, chloroplastic
LocationCucurbita_argyrosperma_scaffold_077 : 418603 .. 422613 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAATATCTAAACGTTAGCCATCAAGTTCATCAAAACCTCTTGATGATCTCGGATCGATGATATTGTTCACTTCAACGGTCTCAACCGACACGATTGTAACTTCAGTTTCACCTAAAGTACTTCATTCCGTTCTTTATATCTTAATGTCTGTCCTGTTCTTGCCCACGTCTCTAAGATTGTGAATAGATAGAGACAAGACATGAGACGATATCAACCACCCAGAACGGGTATCGTATGCATAGAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATACAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCGAAGAAAATGGAGAGATACGCAAATTCCAAGGAGCAAATGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGGTCGGTCTGTTTTTCTTTCTGTAAATTTTCGTCTTCTCCGATCATCGTGTGAACTGAATCGGAAACTGATGATCGCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTAATTTCATTGAATCCTTTGTGTTCTGTTTCACTTTCTTGGCTCTGTTTTCTGTTGATTTGAACGTTTGTTTGAGTTCTTCAATTGAGGAATTATGTGCTCTGACTCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGCTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGGGTTGATAATCGATAGTTTATGTGCTCTGAATCTGTAGTGTTGATGATCGATAGTTTATGTGCTATGAACTGGTAGGGTGCTCTGACTCTGTAGTGTTGATGATCGGTAGTTTATGCGCTATGAACTGCTAGGGATAGTGAGTGATAATTGCTTATGTGCTGTTCTACTAGCTGCATTAGGGATAGTAGTTGGACAAACTCATGGGTTTTGATGGTACTCTAAATTATTCTCCGAACTCGTTGTTAGATCCCACATTGGTTGAAGAGGGGAACGAAACATTCCTAGTAAGGGCGTGGAAACTTCTCCTTAGTAGATTTGTTTTAAAATATCGAGGGGAAGCCTAAAAGAGAAAGCCTAAAGAGGACAATATAGAAGTGGGCTTGAGGTGTTATAAATGGTATTAGAGCTGGACATTGGGTGGTGTGATAATGAGGACGCTGAGCCTCTAAGGGGGTGGATTGTGAGATCCCACATTAGTTGGAGAGAGGAACGAAACATTTCTTATAAGAGTGTGAAAACTTCTCCCTAGTAGATGCGTTCTAGAACTTTGAGGGGAAGCTCAGAATGGAAAGCCTGAATAAGACAATTTCTACTAGCAGTGGGTTTGGGCTGTTGCAAATGGTATCAGAGCTAGATATCGAGCAGTGTGCCAATAAGAACGTTGAGCCTCCAAAGGGGGTGAATTGTGAGATCCTACATTGGTTGGAGAGAGGAACAAAGGATTTCTTATAAGGGTGTGGAAACATCTCGCTAGCAGATGCGTTCTAAAACCAGCAGATGCGTTCTAAAACCTTGAGAGGAAGCCAAGGAAAGCCCAAAGAGGACAATATTTGCTAACGGTGGGCTTGGGTTGCTACAAATGGTATCAGAGCCAGACACCGAGCGGTGTGACAACGAGGACGCTGAGCCCCCAAGGAGAGTGGAACCCAGAAGGGAAAACCCAAAGAGGACAACATCTACTAGCGGTGGACTTGGGTTGTTACGAATGGTATCAAACAAGACAAATGTGTAAGGTGCAATGCACGAGGCTTCTAGTCTTCTAAAGTGTTGAGAGCATGGTTTAAAAGGTTAAAAATTTATTTTAAGATCAGCTTCTAGCATTTAGCAGGGAGTAGTTTCCACACCCTTAGAAAAAATGTTTTGTTCCCCTCTCCAACCGACGTGGGATCTCACAATCCATCTCCCTTGGGGGTCCCAACGTCCTCGCTAGTACAACGCTTGGTGCCTGACATTAATACCATTTGTAACAGTCCAAGCCCACCGCTAGCAGTTATTGTCCTCTTTGGACTTTCCCTTCCGGGCTTCTGCTCAAAGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCTACACCCTTATAAGGAATGTTTCGTTTCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCTTTGGGGTCCCAACGTCCTCGCTAGCATACTGCTCGACGCCTGGCTCTGATACCATTTGTAACAGTCCAAGCCCACCGCTAGCAGAAATTGTCCTCTTTAGGCTTTCCCTTCCGAGCTTCCCCTCAAAGTTTTAAAATGCCTCTACTAGGAAGAGGTTTCCTCACCTTATAAGAGGTTTCTATGGTACTTGAAAAGAACAGTATATTTCAGCTGTTGGTTTACTCAACCGCAACTCCTTGAGTCTCTGAGAGTTTAAGGATGTTAACTGACCCAATGGCGTCGATAATAGGTTACGATGCAGTTGGCTTGAATCTGTGTTTTCGGACCGTGCAACATCTGCCTAATCCTACCATATTTAGTTCCGAAACTCACGAAATTATGATCTTGTTCTTCCTCGTGTGTAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTATAAACTACATTTTCGTTATAACCAAATTTCTAGTCGATTTAGGAAAACGCTTCTCCTTCGTCTGTCTCCGTCGATAAGCTAAGACTACAACATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAGTATGTATACTGTTTTACAAGAACATACATACATATATATGCATTTTCAGTACTGTTTTGACTGATCAGATTGGATTCAAGGCCTAAAAACCACAATTTGTTCTTGCTTGATCACCTTGTTAGATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTAAGAGGAATCTGTTAGTTCTTGTAAAGATCAAGTATGTTCTTGGTTTTTAGCTGATTTGTGTTCTTCATCTGTGTTTGTTTGCTGACAGGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCATACGCTGTCGGATACATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACAATGTTGTTGTTTCTTTGCAAACTTCACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTCCTTAGGAATGTTTCATGAACGTTCGGTCGGGATTTGAGCATTTGACTTACTTTTTTCTGGTCGAAGATTTAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAATCTTGTTACTAATTTATGATTTAATGTTTTATCTCTATATATAGAGAGAGGAACGAACAATTTTTTATAAAAATGTGGAAACCTCTCTCTAGTAAATGCGTTTTGAAACTGTGAGGCTGACGGTGATATATAACAGGCC

mRNA sequence

AATAATATCTAAACGTTAGCCATCAAGTTCATCAAAACCTCTTGATGATCTCGGATCGATGATATTGTTCACTTCAACGGTCTCAACCGACACGATTGTAACTTCAGTTTCACCTAAAGTACTTCATTCCGTTCTTTATATCTTAATGTCTGTCCTGTTCTTGCCCACGTCTCTAAGATTGTGAATAGATAGAGACAAGACATGAGACGATATCAACCACCCAGAACGGGTATCGTATGCATAGAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATACAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCGAAGAAAATGGAGAGATACGCAAATTCCAAGGAGCAAATGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTATAAACTACATTTTCGTTATAACCAAATTTCTAGTCGATTTAGGAAAACGCTTCTCCTTCGTCTGTCTCCGTCGATAAGCTAAGACTACAACATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCATACGCTGTCGGATACATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACAATGTTGTTGTTTCTTTGCAAACTTCACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTCCTTAGGAATGTTTCATGAACGTTCGGTCGGGATTTGAGCATTTGACTTACTTTTTTCTGGTCGAAGATTTAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAATCTTGTTACTAATTTATGATTTAATGTTTTATCTCTATATATAGAGAGAGGAACGAACAATTTTTTATAAAAATGTGGAAACCTCTCTCTAGTAAATGCGTTTTGAAACTGTGAGGCTGACGGTGATATATAACAGGCC

Coding sequence (CDS)

ATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAA

Protein sequence

MNERESVHSIFFNVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
BLAST of Carg16268 vs. NCBI nr
Match: XP_022942554.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita moschata])

HSP 1 Score: 186.0 bits (471), Expect = 6.3e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 182 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 241

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSNPSSSLCPKLLA
Sbjct: 242 KQPCYKDICSMSNPSSSLCPKLLA 265

BLAST of Carg16268 vs. NCBI nr
Match: XP_023540699.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 6.3e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 182 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 241

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSNPSSSLCPKLLA
Sbjct: 242 KQPCYKDICSMSNPSSSLCPKLLA 265

BLAST of Carg16268 vs. NCBI nr
Match: XP_023005623.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 9.1e-43
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPP FEEDPVS
Sbjct: 182 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPLFEEDPVS 241

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSNPSSSLCPKLLA
Sbjct: 242 KQPCYKDICSMSNPSSSLCPKLLA 265

BLAST of Carg16268 vs. NCBI nr
Match: XP_008448557.1 (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 4.5e-42
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 180 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 239

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSN S+ LCPKLLA
Sbjct: 240 KQPCYKDICSMSNTSAPLCPKLLA 263

BLAST of Carg16268 vs. NCBI nr
Match: XP_021767924.1 (beta-carotene isomerase D27, chloroplastic-like [Chenopodium quinoa])

HSP 1 Score: 176.0 bits (445), Expect = 6.5e-41
Identity = 77/84 (91.67%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP FEDMSCEM+YGQVPPPFEED VS
Sbjct: 184 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPKFEDMSCEMVYGQVPPPFEEDEVS 243

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKD+CSM+NPS+SLCPKLL+
Sbjct: 244 KQPCYKDLCSMANPSASLCPKLLS 267

BLAST of Carg16268 vs. TAIR10
Match: AT1G64680.1 (unknown protein)

HSP 1 Score: 163.3 bits (412), Expect = 8.0e-41
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPN+EDMSCEMIYGQ PP FEED  +
Sbjct: 167 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVAT 226

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPC  DICSMSNPSS +CPKL A
Sbjct: 227 KQPCLADICSMSNPSSPICPKLEA 250

BLAST of Carg16268 vs. TAIR10
Match: AT1G03055.1 (unknown protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-19
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           R+LE S CVGMC ++CKIP+Q F  N  G+P+ M P+F D+SC+M++G+ PP  E+DP  
Sbjct: 187 RFLEQSNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAM 246

Query: 81  KQPCYK 87
           KQPC++
Sbjct: 247 KQPCFE 252

BLAST of Carg16268 vs. TAIR10
Match: AT4G01995.1 (unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-16
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           +YLE S CVG+C+N CK+PTQ FF +  G+PL M PNF+D SC+  +G  PP  E+D   
Sbjct: 177 QYLEESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAPP--EDDGNV 236

Query: 81  KQPCYKDICSMSNP---SSSLCP 101
            +PC+ + CS++      S  CP
Sbjct: 237 NEPCF-ETCSIAGRRKLKSGECP 256

BLAST of Carg16268 vs. Swiss-Prot
Match: sp|C7AU21|D27_ORYSJ (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 13  NVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPP 72
           NV+  P  R+LE++ CVGMC N+CKIP Q F  +  G+ + M+PNFEDMSCEMI+GQ PP
Sbjct: 192 NVVYIPKCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMKVYMSPNFEDMSCEMIFGQQPP 251

Query: 73  PFEEDPVSKQPCYKDIC 90
             E+DP  KQPC++  C
Sbjct: 252 --EDDPALKQPCFRTKC 266

BLAST of Carg16268 vs. Swiss-Prot
Match: sp|Q7XA78|D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-18
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           R+LE S CVGMC ++CKIP+Q F  N  G+P+ M P+F D+SC+M++G+ PP  E+DP  
Sbjct: 187 RFLEQSNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAM 246

Query: 81  KQPCYK 87
           KQPC++
Sbjct: 247 KQPCFE 252

BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A1S3BKU4|A0A1S3BKU4_CUCME (beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490700 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.0e-42
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 180 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 239

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSN S+ LCPKLLA
Sbjct: 240 KQPCYKDICSMSNTSAPLCPKLLA 263

BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A0A0L682|A0A0A0L682_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002850 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.4e-41
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 180 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 239

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSM+  S+ LCPKLLA
Sbjct: 240 KQPCYKDICSMAITSAPLCPKLLA 263

BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A2P4IRY8|A0A2P4IRY8_QUESU (Beta-carotene isomerase d27, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_77624 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.8e-40
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCK PTQDFFTNEFGLPLTM PNFEDMSCEM+YGQVPPPFEEDPVS
Sbjct: 182 RYLENSGCVGMCVNMCKFPTQDFFTNEFGLPLTMIPNFEDMSCEMVYGQVPPPFEEDPVS 241

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCY DICS+SNPSSS+CPKL A
Sbjct: 242 KQPCYADICSISNPSSSVCPKLQA 265

BLAST of Carg16268 vs. TrEMBL
Match: tr|K4CIZ7|K4CIZ7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101266539 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.8e-40
Identity = 76/84 (90.48%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 184 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 243

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCY +IC+++NPSS++CPKL A
Sbjct: 244 KQPCYANICTIANPSSNVCPKLSA 267

BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A2G3APJ6|A0A2G3APJ6_CAPAN (beta-carotene isomerase D27, chloroplastic-like OS=Capsicum annuum OX=4072 GN=LOC107856756 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-40
Identity = 75/84 (89.29%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEM+YGQVPPPFEEDPVS
Sbjct: 183 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMVYGQVPPPFEEDPVS 242

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCY +IC+++NPSS++CPKL A
Sbjct: 243 KQPCYANICTIANPSSNVCPKLSA 266

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022942554.16.3e-44100.00beta-carotene isomerase D27, chloroplastic [Cucurbita moschata][more]
XP_023540699.16.3e-44100.00beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_023005623.19.1e-4398.81beta-carotene isomerase D27, chloroplastic [Cucurbita maxima][more]
XP_008448557.14.5e-4296.43PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo][more]
XP_021767924.16.5e-4191.67beta-carotene isomerase D27, chloroplastic-like [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
AT1G64680.18.0e-4186.90unknown protein[more]
AT1G03055.11.0e-1953.03unknown protein[more]
AT4G01995.14.0e-1645.78unknown protein[more]
Match NameE-valueIdentityDescription
sp|C7AU21|D27_ORYSJ1.5e-2055.84Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39... [more]
sp|Q7XA78|D27_ARATH1.8e-1853.03Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D2... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BKU4|A0A1S3BKU4_CUCME3.0e-4296.43beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034907... [more]
tr|A0A0A0L682|A0A0A0L682_CUCSA7.4e-4194.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002850 PE=4 SV=1[more]
tr|A0A2P4IRY8|A0A2P4IRY8_QUESU2.8e-4091.67Beta-carotene isomerase d27, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_77... [more]
tr|K4CIZ7|K4CIZ7_SOLLC2.8e-4090.48Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101266539 PE=4 SV=1[more]
tr|A0A2G3APJ6|A0A2G3APJ6_CAPAN3.7e-4089.29beta-carotene isomerase D27, chloroplastic-like OS=Capsicum annuum OX=4072 GN=LO... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038938D27-like
IPR025114DUF4033
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16268-RACarg16268-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025114Domain of unknown function DUF4033PFAMPF13225DUF4033coord: 20..76
e-value: 4.9E-29
score: 100.0
IPR038938Beta-carotene isomerase D27-likePANTHERPTHR33591FAMILY NOT NAMEDcoord: 21..102
NoneNo IPR availablePANTHERPTHR33591:SF1SUBFAMILY NOT NAMEDcoord: 21..102