Carg16268 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAATATCTAAACGTTAGCCATCAAGTTCATCAAAACCTCTTGATGATCTCGGATCGATGATATTGTTCACTTCAACGGTCTCAACCGACACGATTGTAACTTCAGTTTCACCTAAAGTACTTCATTCCGTTCTTTATATCTTAATGTCTGTCCTGTTCTTGCCCACGTCTCTAAGATTGTGAATAGATAGAGACAAGACATGAGACGATATCAACCACCCAGAACGGGTATCGTATGCATAGAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATACAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCGAAGAAAATGGAGAGATACGCAAATTCCAAGGAGCAAATGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGGTCGGTCTGTTTTTCTTTCTGTAAATTTTCGTCTTCTCCGATCATCGTGTGAACTGAATCGGAAACTGATGATCGCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTAATTTCATTGAATCCTTTGTGTTCTGTTTCACTTTCTTGGCTCTGTTTTCTGTTGATTTGAACGTTTGTTTGAGTTCTTCAATTGAGGAATTATGTGCTCTGACTCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGCTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGGGTTGATAATCGATAGTTTATGTGCTCTGAATCTGTAGTGTTGATGATCGATAGTTTATGTGCTATGAACTGGTAGGGTGCTCTGACTCTGTAGTGTTGATGATCGGTAGTTTATGCGCTATGAACTGCTAGGGATAGTGAGTGATAATTGCTTATGTGCTGTTCTACTAGCTGCATTAGGGATAGTAGTTGGACAAACTCATGGGTTTTGATGGTACTCTAAATTATTCTCCGAACTCGTTGTTAGATCCCACATTGGTTGAAGAGGGGAACGAAACATTCCTAGTAAGGGCGTGGAAACTTCTCCTTAGTAGATTTGTTTTAAAATATCGAGGGGAAGCCTAAAAGAGAAAGCCTAAAGAGGACAATATAGAAGTGGGCTTGAGGTGTTATAAATGGTATTAGAGCTGGACATTGGGTGGTGTGATAATGAGGACGCTGAGCCTCTAAGGGGGTGGATTGTGAGATCCCACATTAGTTGGAGAGAGGAACGAAACATTTCTTATAAGAGTGTGAAAACTTCTCCCTAGTAGATGCGTTCTAGAACTTTGAGGGGAAGCTCAGAATGGAAAGCCTGAATAAGACAATTTCTACTAGCAGTGGGTTTGGGCTGTTGCAAATGGTATCAGAGCTAGATATCGAGCAGTGTGCCAATAAGAACGTTGAGCCTCCAAAGGGGGTGAATTGTGAGATCCTACATTGGTTGGAGAGAGGAACAAAGGATTTCTTATAAGGGTGTGGAAACATCTCGCTAGCAGATGCGTTCTAAAACCAGCAGATGCGTTCTAAAACCTTGAGAGGAAGCCAAGGAAAGCCCAAAGAGGACAATATTTGCTAACGGTGGGCTTGGGTTGCTACAAATGGTATCAGAGCCAGACACCGAGCGGTGTGACAACGAGGACGCTGAGCCCCCAAGGAGAGTGGAACCCAGAAGGGAAAACCCAAAGAGGACAACATCTACTAGCGGTGGACTTGGGTTGTTACGAATGGTATCAAACAAGACAAATGTGTAAGGTGCAATGCACGAGGCTTCTAGTCTTCTAAAGTGTTGAGAGCATGGTTTAAAAGGTTAAAAATTTATTTTAAGATCAGCTTCTAGCATTTAGCAGGGAGTAGTTTCCACACCCTTAGAAAAAATGTTTTGTTCCCCTCTCCAACCGACGTGGGATCTCACAATCCATCTCCCTTGGGGGTCCCAACGTCCTCGCTAGTACAACGCTTGGTGCCTGACATTAATACCATTTGTAACAGTCCAAGCCCACCGCTAGCAGTTATTGTCCTCTTTGGACTTTCCCTTCCGGGCTTCTGCTCAAAGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCTACACCCTTATAAGGAATGTTTCGTTTCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCTTTGGGGTCCCAACGTCCTCGCTAGCATACTGCTCGACGCCTGGCTCTGATACCATTTGTAACAGTCCAAGCCCACCGCTAGCAGAAATTGTCCTCTTTAGGCTTTCCCTTCCGAGCTTCCCCTCAAAGTTTTAAAATGCCTCTACTAGGAAGAGGTTTCCTCACCTTATAAGAGGTTTCTATGGTACTTGAAAAGAACAGTATATTTCAGCTGTTGGTTTACTCAACCGCAACTCCTTGAGTCTCTGAGAGTTTAAGGATGTTAACTGACCCAATGGCGTCGATAATAGGTTACGATGCAGTTGGCTTGAATCTGTGTTTTCGGACCGTGCAACATCTGCCTAATCCTACCATATTTAGTTCCGAAACTCACGAAATTATGATCTTGTTCTTCCTCGTGTGTAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTATAAACTACATTTTCGTTATAACCAAATTTCTAGTCGATTTAGGAAAACGCTTCTCCTTCGTCTGTCTCCGTCGATAAGCTAAGACTACAACATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAGTATGTATACTGTTTTACAAGAACATACATACATATATATGCATTTTCAGTACTGTTTTGACTGATCAGATTGGATTCAAGGCCTAAAAACCACAATTTGTTCTTGCTTGATCACCTTGTTAGATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTAAGAGGAATCTGTTAGTTCTTGTAAAGATCAAGTATGTTCTTGGTTTTTAGCTGATTTGTGTTCTTCATCTGTGTTTGTTTGCTGACAGGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCATACGCTGTCGGATACATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACAATGTTGTTGTTTCTTTGCAAACTTCACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTCCTTAGGAATGTTTCATGAACGTTCGGTCGGGATTTGAGCATTTGACTTACTTTTTTCTGGTCGAAGATTTAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAATCTTGTTACTAATTTATGATTTAATGTTTTATCTCTATATATAGAGAGAGGAACGAACAATTTTTTATAAAAATGTGGAAACCTCTCTCTAGTAAATGCGTTTTGAAACTGTGAGGCTGACGGTGATATATAACAGGCC AATAATATCTAAACGTTAGCCATCAAGTTCATCAAAACCTCTTGATGATCTCGGATCGATGATATTGTTCACTTCAACGGTCTCAACCGACACGATTGTAACTTCAGTTTCACCTAAAGTACTTCATTCCGTTCTTTATATCTTAATGTCTGTCCTGTTCTTGCCCACGTCTCTAAGATTGTGAATAGATAGAGACAAGACATGAGACGATATCAACCACCCAGAACGGGTATCGTATGCATAGAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATACAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCGAAGAAAATGGAGAGATACGCAAATTCCAAGGAGCAAATGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTATAAACTACATTTTCGTTATAACCAAATTTCTAGTCGATTTAGGAAAACGCTTCTCCTTCGTCTGTCTCCGTCGATAAGCTAAGACTACAACATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCATACGCTGTCGGATACATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACAATGTTGTTGTTTCTTTGCAAACTTCACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTCCTTAGGAATGTTTCATGAACGTTCGGTCGGGATTTGAGCATTTGACTTACTTTTTTCTGGTCGAAGATTTAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAATCTTGTTACTAATTTATGATTTAATGTTTTATCTCTATATATAGAGAGAGGAACGAACAATTTTTTATAAAAATGTGGAAACCTCTCTCTAGTAAATGCGTTTTGAAACTGTGAGGCTGACGGTGATATATAACAGGCC ATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAA MNERESVHSIFFNVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
BLAST of Carg16268 vs. NCBI nr
Match: XP_022942554.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita moschata]) HSP 1 Score: 186.0 bits (471), Expect = 6.3e-44 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of Carg16268 vs. NCBI nr
Match: XP_023540699.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 186.0 bits (471), Expect = 6.3e-44 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of Carg16268 vs. NCBI nr
Match: XP_023005623.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita maxima]) HSP 1 Score: 182.2 bits (461), Expect = 9.1e-43 Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0
BLAST of Carg16268 vs. NCBI nr
Match: XP_008448557.1 (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo]) HSP 1 Score: 179.9 bits (455), Expect = 4.5e-42 Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of Carg16268 vs. NCBI nr
Match: XP_021767924.1 (beta-carotene isomerase D27, chloroplastic-like [Chenopodium quinoa]) HSP 1 Score: 176.0 bits (445), Expect = 6.5e-41 Identity = 77/84 (91.67%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of Carg16268 vs. TAIR10
Match: AT1G64680.1 (unknown protein) HSP 1 Score: 163.3 bits (412), Expect = 8.0e-41 Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0
BLAST of Carg16268 vs. TAIR10
Match: AT1G03055.1 (unknown protein) HSP 1 Score: 93.2 bits (230), Expect = 1.0e-19 Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0
BLAST of Carg16268 vs. TAIR10
Match: AT4G01995.1 (unknown protein) HSP 1 Score: 81.3 bits (199), Expect = 4.0e-16 Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0
BLAST of Carg16268 vs. Swiss-Prot
Match: sp|C7AU21|D27_ORYSJ (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20 Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 0
BLAST of Carg16268 vs. Swiss-Prot
Match: sp|Q7XA78|D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 1.8e-18 Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0
BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A1S3BKU4|A0A1S3BKU4_CUCME (beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490700 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 3.0e-42 Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A0A0L682|A0A0A0L682_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002850 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 7.4e-41 Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0
BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A2P4IRY8|A0A2P4IRY8_QUESU (Beta-carotene isomerase d27, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_77624 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.8e-40 Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0
BLAST of Carg16268 vs. TrEMBL
Match: tr|K4CIZ7|K4CIZ7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101266539 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.8e-40 Identity = 76/84 (90.48%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A2G3APJ6|A0A2G3APJ6_CAPAN (beta-carotene isomerase D27, chloroplastic-like OS=Capsicum annuum OX=4072 GN=LOC107856756 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 3.7e-40 Identity = 75/84 (89.29%), Postives = 82/84 (97.62%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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