Carg16205-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGGCGGCCTGAACAAGATCGCCACCGCACTCATCTCCCTCTTCGCCATCACTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCACGCGCCACCACCCCACCCCCACCCAACCCAAACAAAATTGCATCTACCTTTTCCGCTGGAGGACCAAAACCAGGATCGAACCCACAGAAATCGCGTCCAAAGTCCACGATGATTCCGCGTCGCCGGAGACGGCGGCGGTCGACCAAGAATTGGAGAAGTGGCGGGTACTGTGCGGACCGTCCAGAGCGCTTTTCACTATCGTTGAAGAGGAAGAAGAGAGAGAAGGAATAGAATCTTGCGAGTGTGATTCTAAACCGGATTTCGATACGACGCCGTTTTATACGCCCTGCGGTTCTCCTCCCTTCTTCTCGCCGTCCCCCACTCGTGACGCCGGTGACTTCCCGGTCCAAAAAGATTCTTCCGACGGCTCGTTTTTGGCTATTGAGATTACCCACTGA ATGGACGGCGGCCTGAACAAGATCGCCACCGCACTCATCTCCCTCTTCGCCATCACTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCACGCGCCACCACCCCACCCCCACCCAACCCAAACAAAATTGCATCTACCTTTTCCGCTGGAGGACCAAAACCAGGATCGAACCCACAGAAATCGCGTCCAAAGTCCACGATGATTCCGCGTCGCCGGAGACGGCGGCGGTCGACCAAGAATTGGAGAAGTGGCGGGTACTGTGCGGACCGTCCAGAGCGCTTTTCACTATCGTTGAAGAGGAAGAAGAGAGAGAAGGAATAGAATCTTGCGAGTGTGATTCTAAACCGGATTTCGATACGACGCCGTTTTATACGCCCTGCGGTTCTCCTCCCTTCTTCTCGCCGTCCCCCACTCGTGACGCCGGTGACTTCCCGGTCCAAAAAGATTCTTCCGACGGCTCGTTTTTGGCTATTGAGATTACCCACTGA ATGGACGGCGGCCTGAACAAGATCGCCACCGCACTCATCTCCCTCTTCGCCATCACTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCACGCGCCACCACCCCACCCCCACCCAACCCAAACAAAATTGCATCTACCTTTTCCGCTGGAGGACCAAAACCAGGATCGAACCCACAGAAATCGCGTCCAAAGTCCACGATGATTCCGCGTCGCCGGAGACGGCGGCGGTCGACCAAGAATTGGAGAAGTGGCGGGTACTGTGCGGACCGTCCAGAGCGCTTTTCACTATCGTTGAAGAGGAAGAAGAGAGAGAAGGAATAGAATCTTGCGAGTGTGATTCTAAACCGGATTTCGATACGACGCCGTTTTATACGCCCTGCGGTTCTCCTCCCTTCTTCTCGCCGTCCCCCACTCGTGACGCCGGTGACTTCCCGGTCCAAAAAGATTCTTCCGACGGCTCGTTTTTGGCTATTGAGATTACCCACTGA MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIEPTEIASKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSKPDFDTTPFYTPCGSPPFFSPSPTRDAGDFPVQKDSSDGSFLAIEITH
BLAST of Carg16205-RA vs. NCBI nr
Match: XP_022943016.1 (uncharacterized protein LOC111447877 [Cucurbita moschata]) HSP 1 Score: 334.0 bits (855), Expect = 3.0e-88 Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of Carg16205-RA vs. NCBI nr
Match: XP_023005969.1 (uncharacterized protein LOC111498829 [Cucurbita maxima]) HSP 1 Score: 312.4 bits (799), Expect = 9.3e-82 Identity = 155/169 (91.72%), Postives = 158/169 (93.49%), Query Frame = 0
BLAST of Carg16205-RA vs. NCBI nr
Match: XP_023528874.1 (uncharacterized protein LOC111791670 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 143.7 bits (361), Expect = 5.7e-31 Identity = 91/173 (52.60%), Postives = 109/173 (63.01%), Query Frame = 0
BLAST of Carg16205-RA vs. NCBI nr
Match: XP_022983133.1 (uncharacterized protein LOC111481774 [Cucurbita maxima]) HSP 1 Score: 140.6 bits (353), Expect = 4.8e-30 Identity = 89/173 (51.45%), Postives = 110/173 (63.58%), Query Frame = 0
BLAST of Carg16205-RA vs. NCBI nr
Match: XP_022935266.1 (uncharacterized protein LOC111442204 [Cucurbita moschata]) HSP 1 Score: 139.8 bits (351), Expect = 8.2e-30 Identity = 88/175 (50.29%), Postives = 104/175 (59.43%), Query Frame = 0
BLAST of Carg16205-RA vs. TAIR10
Match: AT3G11640.1 (unknown protein) HSP 1 Score: 50.1 bits (118), Expect = 1.6e-06 Identity = 56/167 (33.53%), Postives = 76/167 (45.51%), Query Frame = 0
BLAST of Carg16205-RA vs. TrEMBL
Match: tr|A0A1S4DUG3|A0A1S4DUG3_CUCME (uncharacterized protein LOC103486669 OS=Cucumis melo OX=3656 GN=LOC103486669 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23 Identity = 83/182 (45.60%), Postives = 101/182 (55.49%), Query Frame = 0
BLAST of Carg16205-RA vs. TrEMBL
Match: tr|W9RXM3|W9RXM3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018830 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 3.9e-12 Identity = 62/193 (32.12%), Postives = 96/193 (49.74%), Query Frame = 0
BLAST of Carg16205-RA vs. TrEMBL
Match: tr|A0A2I4H537|A0A2I4H537_9ROSI (uncharacterized protein LOC109013557 OS=Juglans regia OX=51240 GN=LOC109013557 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 4.3e-11 Identity = 57/182 (31.32%), Postives = 89/182 (48.90%), Query Frame = 0
BLAST of Carg16205-RA vs. TrEMBL
Match: tr|A0A1Q3ANJ8|A0A1Q3ANJ8_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_00865 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10 Identity = 63/217 (29.03%), Postives = 96/217 (44.24%), Query Frame = 0
BLAST of Carg16205-RA vs. TrEMBL
Match: tr|A0A0A0LB13|A0A0A0LB13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778950 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 3.7e-10 Identity = 58/147 (39.46%), Postives = 67/147 (45.58%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|