Carg16205 (gene) Silver-seed gourd

NameCarg16205
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA-directed DNA polymerase, family B, conserved site
LocationCucurbita_argyrosperma_scaffold_077 : 34205 .. 34702 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGCGGCCTGAACAAGATCGCCACCGCACTCATCTCCCTCTTCGCCATCACTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCACGCGCCACCACCCCACCCCCACCCAACCCAAACAAAATTGCATCTACCTTTTCCGCTGGAGGACCAAAACCAGGATCGAACCCACAGAAATCGCGTCCAAAGTCCACGATGATTCCGCGTCGCCGGAGACGGCGGCGGTCGACCAAGAATTGGAGAAGTGGCGGGTACTGTGCGGACCGTCCAGAGCGCTTTTCACTATCGTTGAAGAGGAAGAAGAGAGAGAAGGAATAGAATCTTGCGAGTGTGATTCTAAACCGGATTTCGATACGACGCCGTTTTATACGCCCTGCGGTTCTCCTCCCTTCTTCTCGCCGTCCCCCACTCGTGACGCCGGTGACTTCCCGGTCCAAAAAGATTCTTCCGACGGCTCGTTTTTGGCTATTGAGATTACCCACTGA

mRNA sequence

ATGGACGGCGGCCTGAACAAGATCGCCACCGCACTCATCTCCCTCTTCGCCATCACTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCACGCGCCACCACCCCACCCCCACCCAACCCAAACAAAATTGCATCTACCTTTTCCGCTGGAGGACCAAAACCAGGATCGAACCCACAGAAATCGCGTCCAAAGTCCACGATGATTCCGCGTCGCCGGAGACGGCGGCGGTCGACCAAGAATTGGAGAAGTGGCGGGTACTGTGCGGACCGTCCAGAGCGCTTTTCACTATCGTTGAAGAGGAAGAAGAGAGAGAAGGAATAGAATCTTGCGAGTGTGATTCTAAACCGGATTTCGATACGACGCCGTTTTATACGCCCTGCGGTTCTCCTCCCTTCTTCTCGCCGTCCCCCACTCGTGACGCCGGTGACTTCCCGGTCCAAAAAGATTCTTCCGACGGCTCGTTTTTGGCTATTGAGATTACCCACTGA

Coding sequence (CDS)

ATGGACGGCGGCCTGAACAAGATCGCCACCGCACTCATCTCCCTCTTCGCCATCACTTTCCTACTCCTCCTCGCCCAAATCCTCTTCTTTTTCTCTCGCACGCGCCACCACCCCACCCCCACCCAACCCAAACAAAATTGCATCTACCTTTTCCGCTGGAGGACCAAAACCAGGATCGAACCCACAGAAATCGCGTCCAAAGTCCACGATGATTCCGCGTCGCCGGAGACGGCGGCGGTCGACCAAGAATTGGAGAAGTGGCGGGTACTGTGCGGACCGTCCAGAGCGCTTTTCACTATCGTTGAAGAGGAAGAAGAGAGAGAAGGAATAGAATCTTGCGAGTGTGATTCTAAACCGGATTTCGATACGACGCCGTTTTATACGCCCTGCGGTTCTCCTCCCTTCTTCTCGCCGTCCCCCACTCGTGACGCCGGTGACTTCCCGGTCCAAAAAGATTCTTCCGACGGCTCGTTTTTGGCTATTGAGATTACCCACTGA

Protein sequence

MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIEPTEIASKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSKPDFDTTPFYTPCGSPPFFSPSPTRDAGDFPVQKDSSDGSFLAIEITH
BLAST of Carg16205 vs. NCBI nr
Match: XP_022943016.1 (uncharacterized protein LOC111447877 [Cucurbita moschata])

HSP 1 Score: 334.0 bits (855), Expect = 3.0e-88
Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60
           MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE
Sbjct: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60

Query: 61  PTEIASKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSKPD 120
           PTEIASKV+DDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSKPD
Sbjct: 61  PTEIASKVYDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSKPD 120

Query: 121 FDTTPFYTPCGSPPFFSPSPTRDAGDFPVQKDSSDGSFLAIEITH 166
           FDTTPF+TPCGSPPFFSPSPTRDAGDFPVQKDSSDGSFLAIEITH
Sbjct: 121 FDTTPFHTPCGSPPFFSPSPTRDAGDFPVQKDSSDGSFLAIEITH 165

BLAST of Carg16205 vs. NCBI nr
Match: XP_023005969.1 (uncharacterized protein LOC111498829 [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 9.3e-82
Identity = 155/169 (91.72%), Postives = 158/169 (93.49%), Query Frame = 0

Query: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60
           MDGGL KIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLF WRTKTRIE
Sbjct: 1   MDGGLYKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFCWRTKTRIE 60

Query: 61  PTEIASKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSKPD 120
           PTEIASKVHDDSA+ ETAAVDQELEKWRVLCGPSRALFTIVEEEEEREG+ESCECD KPD
Sbjct: 61  PTEIASKVHDDSATAETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGVESCECDPKPD 120

Query: 121 FDTTPFYTPCGSPPFFSPSPTRDAGDFPVQKDSSDG----SFLAIEITH 166
           FDTTPFYTPCGSPPFF+PSPT DA DFPVQKDS DG    SFLAIEITH
Sbjct: 121 FDTTPFYTPCGSPPFFTPSPTHDAADFPVQKDSPDGDRTASFLAIEITH 169

BLAST of Carg16205 vs. NCBI nr
Match: XP_023528874.1 (uncharacterized protein LOC111791670 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 5.7e-31
Identity = 91/173 (52.60%), Postives = 109/173 (63.01%), Query Frame = 0

Query: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60
           MDGGLNKI   LI+LF +TFLLL+AQIL+   R RH      P + C Y F WR + RIE
Sbjct: 1   MDGGLNKIVPVLIALFLLTFLLLVAQILYLLLRRRHQHGAADPNEKCFYFFCWRNQLRIE 60

Query: 61  PTEIA--SKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSK 120
           P EIA  SK H +    E AAV   +E+W+ L GPSR LFTI +EEEE EGIES      
Sbjct: 61  PKEIACISKTHHNF---EAAAV--VVEEWQELGGPSRTLFTI-QEEEESEGIESS----- 120

Query: 121 PDFDTTPFYTPCGSPPFF---SPSPTRDAGDFPVQKDSSDGS----FLAIEIT 165
               T  F+TPCGSP ++   SPSPTR+AG+FPV  D  D +    FLAIEI+
Sbjct: 121 ---STMSFHTPCGSPAYYFTPSPSPTREAGNFPVDGDCWDHNRTTPFLAIEIS 159

BLAST of Carg16205 vs. NCBI nr
Match: XP_022983133.1 (uncharacterized protein LOC111481774 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 4.8e-30
Identity = 89/173 (51.45%), Postives = 110/173 (63.58%), Query Frame = 0

Query: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60
           MDGGLNKI   LI+LF +TFLLL+AQIL+  SR RH     +P + C Y F WR ++RI+
Sbjct: 1   MDGGLNKIVPVLIALFLLTFLLLVAQILYLLSRRRHQHCAAEPNKKCFYSFCWRNQSRIQ 60

Query: 61  PTEIA--SKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSK 120
           P EIA  SK H +    E AAV   +E+W+ L GPSR LFTI +EEEE EG ES      
Sbjct: 61  PKEIASISKTHHNF---EAAAV--VVEEWQELGGPSRTLFTI-QEEEESEGTESS----- 120

Query: 121 PDFDTTPFYTPCGSPPFF---SPSPTRDAGDFPVQKDSSDGS----FLAIEIT 165
               T  F+TPCGSP  +   SPSPTR+AG+FPV  D  D +    FLA+EI+
Sbjct: 121 ---STMTFHTPCGSPANYFTPSPSPTREAGNFPVDGDCWDHNRTTPFLALEIS 159

BLAST of Carg16205 vs. NCBI nr
Match: XP_022935266.1 (uncharacterized protein LOC111442204 [Cucurbita moschata])

HSP 1 Score: 139.8 bits (351), Expect = 8.2e-30
Identity = 88/175 (50.29%), Postives = 104/175 (59.43%), Query Frame = 0

Query: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRTKTRIE 60
           MDGGLNKI   LI+LF +TFLLL+AQIL+  SR RH      P + C Y F WR + RIE
Sbjct: 1   MDGGLNKIVPVLIALFLLTFLLLIAQILYLLSRRRHQHGAADPNEKCFYFFCWRNQLRIE 60

Query: 61  PTEIA--SKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESCECDSK 120
           P EIA  SK H +    E         +W+ L GPSR LFTI +EEEE EGIES      
Sbjct: 61  PKEIACISKTHHNF---EAXXXXXXXXEWQELGGPSRTLFTI-QEEEESEGIESS----- 120

Query: 121 PDFDTTPFYTPCGSPPFF-----SPSPTRDAGDFPVQKDSSDGS----FLAIEIT 165
               T  F+TPCGSP ++     S SPTRDAG+FPV  D  D +    FLAIEI+
Sbjct: 121 ---STMSFHTPCGSPAYYFTPSPSSSPTRDAGNFPVDGDCWDHNRTTPFLAIEIS 163

BLAST of Carg16205 vs. TAIR10
Match: AT3G11640.1 (unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-06
Identity = 56/167 (33.53%), Postives = 76/167 (45.51%), Query Frame = 0

Query: 5   LNKIATALISLFAITFLLLLAQILFFF-SRTRHHPTPTQPK---QNCIYLFRWRTKTRIE 64
           L      L+++     L+L A++ + F  RT   P+P   +   Q  +        +RIE
Sbjct: 4   LTNSGAVLLAVLLFFLLILFAELSYIFCCRTGSLPSPASKEVLFQFLMCXXXXXXXSRIE 63

Query: 65  P-TEIASKVHDDSASPETAAVDQE----LEKWRVLCGPSRALFTIVEEEEE----REGIE 124
           P T I S   ++      AAV +E     +KWRV    SR LFTI EE+ E       + 
Sbjct: 64  PCTGIVSVQMEEDV--VAAAVPEEEFAAADKWRV----SRLLFTIEEEDLEXXXXXXXVI 123

Query: 125 SCECDS----------KPDFDTTPFYTPCGSPPFF--SPSPTRDAGD 147
           S E D+          +   D TPF TPC SPP+F  SPSP RD  D
Sbjct: 124 SAEVDNGFEVQVDIPVEYSGDPTPFLTPCNSPPYFTPSPSPGRDMDD 164

BLAST of Carg16205 vs. TrEMBL
Match: tr|A0A1S4DUG3|A0A1S4DUG3_CUCME (uncharacterized protein LOC103486669 OS=Cucumis melo OX=3656 GN=LOC103486669 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 83/182 (45.60%), Postives = 101/182 (55.49%), Query Frame = 0

Query: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTR--HHPTPTQPKQNCIYLFRWRTKTR 60
           MDGGLNKIAT LI             IL+   R R        +P Q C YLF WR ++R
Sbjct: 1   MDGGLNKIATPLILXXXXXXXXXXXXILYILYRRRRLQRLGGPEPNQKCFYLF-WRNQSR 60

Query: 61  IEPTEIASKVHDDSASPETAAV------DQELEKWRVLCGPSRALFTIVEEEEEREGIES 120
           I+P EI S    D  S E A V      + EL KW+ LCGPSR LFTI +EEEEREGI  
Sbjct: 61  IQPKEIPSISKIDGHSSEGAVVVVVETAEDELTKWQELCGPSRTLFTI-KEEEEREGIIE 120

Query: 121 C-ECDS-----KPDFDTTPFYTPCGSPPFFSPSPTRDAGDFPVQKDSSDGS----FLAIE 165
           C E ++     K D DTTPF+TPC SPP+ +PS +  + DFP  +   D +    F AI+
Sbjct: 121 CFEYNNPFPKLKTDEDTTPFHTPCASPPYLTPS-SSPSRDFPADRGCPDDNMTTPFSAIQ 179

BLAST of Carg16205 vs. TrEMBL
Match: tr|W9RXM3|W9RXM3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018830 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-12
Identity = 62/193 (32.12%), Postives = 96/193 (49.74%), Query Frame = 0

Query: 1   MDGGLNKIATALISLFAITFLLLLAQILFFFSRTR--HHPTPTQP-------------KQ 60
           M GG++K+  ALI++FA+  L+L+A +L+ F R R  H  +   P              +
Sbjct: 1   MSGGVSKLGAALIAVFAVCLLILVADLLYVFCRRRRFHRRSSGDPVLAGDSSSLYVLSSK 60

Query: 61  NCIYLFRWRTKT-RIEPTEI------------ASKVHDDSASPETAAVDQELEKW--RVL 120
             +Y F W+ ++ RIEP E+              + HD   S +TA ++ ++ K   + +
Sbjct: 61  ELLYFFCWKNQSARIEPNEVNIINVIDDPALHHRRDHDHRDSDQTAEIEVDVMKLHEQGM 120

Query: 121 CGPSRALFTIVEEEEER------EGIESCECD-------SKPDF---------DTTPFYT 142
            GPSR LFTI EEEE        +G+++ + D       S  D          D TPF T
Sbjct: 121 YGPSRMLFTIKEEEEAESQRSISDGLDNFDDDQDKSTVISTDDVAITGAVELDDATPFST 180

BLAST of Carg16205 vs. TrEMBL
Match: tr|A0A2I4H537|A0A2I4H537_9ROSI (uncharacterized protein LOC109013557 OS=Juglans regia OX=51240 GN=LOC109013557 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.3e-11
Identity = 57/182 (31.32%), Postives = 89/182 (48.90%), Query Frame = 0

Query: 4   GLNKIATALISLFAITFLLLLAQILFFFSRTRH----------HPTPTQPKQNCIYLFRW 63
           G +K+A++L ++FA++ L +L Q+ +   R R           +   + PK+  +++F W
Sbjct: 3   GPSKLASSLTAMFAVSLLAILVQLFWVLRRRRRLRRQSIEVGGNSFYSSPKE-LLHIFCW 62

Query: 64  RTKTRIEPTEIASKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESC 123
             ++RIEP E  +     + SP+      ++ KW VL G SR LFTI +EE EREG++S 
Sbjct: 63  ENQSRIEPNEAPA----PTPSPQITTEADDVFKWHVLYGQSRILFTI-KEEAEREGLDSE 122

Query: 124 ECDSKPD------------------------------FDTTPFYTPCGSPPFFS--PSPT 144
            C S  +                               D TPF TPC SPP+++  PSPT
Sbjct: 123 NCSSSENGTRTKRAVCTEEVVGVLARSLPVVAVKIDVDDETPFSTPCASPPYYTPLPSPT 178

BLAST of Carg16205 vs. TrEMBL
Match: tr|A0A1Q3ANJ8|A0A1Q3ANJ8_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_00865 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 63/217 (29.03%), Postives = 96/217 (44.24%), Query Frame = 0

Query: 4   GLNKIATALISLFAITFLLLLAQILFFFSRTR------------HHPTPT--QPKQNCIY 63
           GL+K+ATAL  +FA++ ++L+  +++   R R              P  +   P +  +Y
Sbjct: 3   GLSKVATALTVVFAVSLVILVCDLIYVLWRRRGFWERGMAGEDSEFPGNSFHAPSKELLY 62

Query: 64  LFRWRTKTRIEPTEIASKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREG 123
            F W+ + RIEP   A+ V              EL KW+   GPSR LFTI EE +EREG
Sbjct: 63  FFCWKNQCRIEPA--AAAVAPXXXXXXXXXXXDELAKWQAY-GPSRVLFTIREEADEREG 122

Query: 124 IESCECDSKPDFD----------------------------------TTPFYTPCGSPPF 164
           +ES  C +  D +                                   TPF TPCGSP +
Sbjct: 123 LESESCCTSFDENGTRAKRVRLNDCFEDKVVLPQSSSQVVVDIEVDQATPFSTPCGSPQY 182

BLAST of Carg16205 vs. TrEMBL
Match: tr|A0A0A0LB13|A0A0A0LB13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778950 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-10
Identity = 58/147 (39.46%), Postives = 67/147 (45.58%), Query Frame = 0

Query: 1   MDGGLNKIATALI-----SLFAITFLLLLAQILFFFSRTRHHPTPTQPKQNCIYLFRWRT 60
           MDG LNKIAT LI                                    Q   +LF WR 
Sbjct: 1   MDGRLNKIATPLILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKSFFLF-WRN 60

Query: 61  KTRIEPTEI--ASKVHDDSASPETAAVDQELEKWRVLCGPSRALFTIVEEEEEREGIESC 120
           ++RI+P EI   SK+  DS          ELEKW+ LCGPSR LFTI +EEEEREGI  C
Sbjct: 61  QSRIQPKEIPSISKIDADSEGAVVETAGDELEKWQELCGPSRTLFTI-KEEEEREGIMEC 120

Query: 121 ECDSKPDF--------DTTPFYTPCGS 133
              + P          DTTPF+TP  S
Sbjct: 121 FEYNNPFHKLKTDEVEDTTPFHTPSAS 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022943016.13.0e-8898.79uncharacterized protein LOC111447877 [Cucurbita moschata][more]
XP_023005969.19.3e-8291.72uncharacterized protein LOC111498829 [Cucurbita maxima][more]
XP_023528874.15.7e-3152.60uncharacterized protein LOC111791670 [Cucurbita pepo subsp. pepo][more]
XP_022983133.14.8e-3051.45uncharacterized protein LOC111481774 [Cucurbita maxima][more]
XP_022935266.18.2e-3050.29uncharacterized protein LOC111442204 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G11640.11.6e-0633.53unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4DUG3|A0A1S4DUG3_CUCME1.3e-2345.60uncharacterized protein LOC103486669 OS=Cucumis melo OX=3656 GN=LOC103486669 PE=... [more]
tr|W9RXM3|W9RXM3_9ROSA3.9e-1232.12Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018830 PE=4 SV=1[more]
tr|A0A2I4H537|A0A2I4H537_9ROSI4.3e-1131.32uncharacterized protein LOC109013557 OS=Juglans regia OX=51240 GN=LOC109013557 P... [more]
tr|A0A1Q3ANJ8|A0A1Q3ANJ8_CEPFO1.3e-1029.03Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_00865 PE=4... [more]
tr|A0A0A0LB13|A0A0A0LB13_CUCSA3.7e-1039.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778950 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16205-RACarg16205-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..158
NoneNo IPR availablePANTHERPTHR34054:SF1SUBFAMILY NOT NAMEDcoord: 122..148
NoneNo IPR availablePANTHERPTHR34054FAMILY NOT NAMEDcoord: 122..148
coord: 4..111
NoneNo IPR availablePANTHERPTHR34054:SF1SUBFAMILY NOT NAMEDcoord: 4..111