Carg24100 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTCGCCATTGCCGTCTATAAATACCTCTCTCTCTCTCTCTCTCCTCGTTTTGCTTTGTAAACTCCATTTTTTTCTAGAGAGAGAAACGAAGAAGCATTGGTTCATTAGCTGAGAGATACAGAACTGAGAATGGGATCGCCGTCCGGCCAGATCAGTGGCTACGATCTCTCATTTAAGGTGCTTCTTATCGGCGATTCCGGCGTCGGTAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTGTCGACAATCTCACTCCTACAATTGGTACTTCCTTTTTCTAACTCAATCGATTATGTTCCTTCTCTTTATCTACTCTTAATCTGTTTTGTTGCTTCGGAAATTAAGTGATTGAGTTGATTATTTGTGTTGCATTGTGCTTCTTCTAGTAGGTTTCGATTCGTTCATTTGAATTTAATGGAGAAAGTAGAGGAGTTGGAGATTTTAGATTGAGGAAAGTATAGGTGATTTGTGGAATTGAATTTATTCTGATTAGTTGTTCTAAGGGAGAATTTGTGTTCACTGTCATCTATAGGTGTGGATTTCAAGATCAAACAACTTACGATTGGTGGTAAGAGATTGAAGCTGACTATTTGGGATACCGGTAATGAACTGAATCAAATGGATCTCTGTTTTACGTTTTTTATGATTTCAATTTTGGAGTTGGACACTGAACTTTGGATCGTTTTGAAAATTTAAATATAGGTTAAAATATATTTTTAGTAAGATTTTTTAACCTATATTTAAAATTTCAAAATAATGTAAGATTTTTTTGCCTCTATATTTGGCAAGTATTACGATCGAACATCTAGGGTTAAATTTATTTCTGTGATCGAGGCATATTAATAGATAGGTAATTGAATAACTTTTTAATTTGGGATGCTTGATTCACTTACCCATATTTTATCCATAAGTTATTTGTCAATCAAAAAAAAAAATTAATAAGTCAAAAGATTTCATTGCGATATTTTTTTTTGAAGGACTTGTATTTTAATAGATTGTGGGCAGGGAGGAAAAGATAAGTCTTATTTGGAACCGTTTTTTGGTCTCTGTTCTGTTAATTTATGTTGCAATTACACTTTCTTTTCCATTAATGACTGAAGATATTTAAGTTCTCCATGCAAGATGGTCACGCTTGCTTGCTTATAAGTATAAACTAAAAAACAATTCACTCGTCAAAAGGTGGATGGCTTTCTGAATCATTGAATTATCCTTTCAAAATTAATAATTTAATGTTACTTAAAGAAAAGGTGGCTGACTTATTGAAGATTTAACATGGCGCAGCTGGGCAAGAGAGGTTCAGATCACTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGCTATCAAATGGTAATCTTGTGCTTCGACTTAGATGCATTCAGTGATTTACTGTCAGCTTTCAGAGTCCATTGAATGTTCCAAAACATATTAAACGATGTTATTACTATGAATCTCAGCATTTTTGGTATGTTCTGATAGAGTATTGATTGAGCTTGATCATGCCACTGAATTAGGAGAAGGATATGCAGAAGATCGTTCGTTATTTTTCTTCTTTTTCTCTAAAACCTCTTTTACAATTAACGAATTGGGAATTATTTATAGATTCATTTTGTTGAATTCCCTCTGAACTCAAATTACGGTCAAGATGGGACTAGTTATTTCAGTCATTGGATGAATATTTGATAGCACCCATCTGATTGATGGGTATTTTTGGATAGAACTTTATTGTTTATGTTTCATTCTTTTCTATTTCCTCTTTTAAAAGAAGTGCACATTCGTTGTGAAATGTGTTAGTTCTCATCAAACTCTTTAGATCCTAAAGTAAGAATTCATGGAGAATTCTAAATTCGCACTTTCTTATATTACATTACTTTTGGTCTAGTGATATTGTTTTAATTTTTGTTTGTCTTAGTATATGATGTGACTCGGAGAGAAACCTTTACAAACCTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAAATCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGGGTAAGTTCTTTGTATCTCTTACGACACTCATGGTCAATACAGTTTATAAATGTATAAACTAGGATGTCTATGTGTAAAATGGAAGGATTAGATACTAATGACTTTATCGAAAATGGCATGATAATCTGATCTGAAAGGACCTCAGACCCTTACGTATATGAGGATGCTTAGTCGCATTACTCTATACTAGAGGGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTCCCCTCCTCAATCGATGTGGGATCTCATAATCCACCCTCCTTGGGAGCCCAACGTTCTCACTGGCACACTGCTCGGTGTCTTGCTCTGATACCATTTGTAACAGCTCAAAACCACCGCTAGTAGATATTGTTCGCTTTGACCCTTTACGTATCGCCGTCAACCTCACGGTTGGAGAGGAGAACGAAGCATTCCTTTTAAGGGTGTAGAAACCTCTCCTTAATAGACGCGTTTTAAAACTGTGAGGCTGGCGGTGATACGTAATGGGTCAAAGCAGACAATATTTGCTACTAGTGGGTTTGGATTGTTACAAATGATATTAGAGCCAGGCACCGAGCGGTGTACCAACAGGGACATTGGCCCCCAGGAGGGGTGGATTGTGAGATCCCACGTTAGTTGGAGAGGGAAACAAAACATTTCTTATAAGGGTAACAAAACATTTCTTATAACGGTGTGGAAACATCTTCCTAATAGACACGTTATAAAATCATGAAGCTGACGGAGATACGTAACGGGCCAAAGAAGACAATATCTGCGCACAATTTATTAATGTGTTGCATTAATCTCAGGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTTGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGCGCTAAAACCAGAGAAAATGTAGCGAAATGTTTTGAAGAACTTGCAATTAAGGTACTTTTTAACACAACAGTTATCATTTAATTACGTTAGAAAGAAAACCAATGACATTTTACATGTGAATATGATATGCAAAAACATAGCAGATTAGCTGTTGGTGGACACAGTAAATAGTTTAAGAAGTTGAGTGTAAAAATGGTTGTTTCCTTTTAAATACCGAAACTTGTAGCCAATAGTAATAGTGATCCGTGTAACAGCCCAAGTCCACCGCTAGCCAATATTGTCTATTTTGGGCTTCCCTCAAGATTCTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACTCTAATAAAAAATATTTCGTTCCTCTCTCCAACCAATTTGGGATCTCATAATCCACCTCCCTTCGGGGTCCAACGTTCTCGTTGATACTCGTTCCTCTTTCCAATCGATGTGGGATCTCACAATCCACCTCCCTTTGGGACTAGCGTTCTTGCTGACACTCATTTCTCTCTCTAATCGATGTGGGATCTCACAATCCACCCCCCTTCGAAGCCCAGTGTCCTCGCTAGCACTCGTTCCTCTTTCCAATCGATTTGGGATCTCACAATCCAGCGTCCTCTCTAGCACACCACCCGGAACTAGACTCTGATACCATTGTAACGGCCCAAGCCCACTGCTGGTAGATATAGTCTTCTTTGGGCTTTCCCTCAAGGTTTTTAAAACTCGTCTGCTAGGGAGAGGTTTCCACGCCCTTATAAAAAATGTTGTTCCTCTCCCCATCTCACAATCAGTTCCAGTGATAGGGCATAGGGAGCGGAAAAGATTCTCTATTTTAACTTTTATATATGATTTTTCAACTATGAACGTTTAGGAGGAGAAATAAGTGAGGAAAAAAACATAAACGTATTAACATTTTTATATAATCTTCTCGATTTCAACAAGCCGAGGGGGCGATTTCCCGCCCTTGATCTATAGAGAATTTGGCAAACAACAACACTTATAGAATTACCGTCATATAAAGGAAGCTCCCAAGAATCTAGGAAACATGACATTATTGTTTGGAAACTTTGCATATTCAAATGTTTGTAAATATTGTGCAGATAATGGAGGTTCCGAGTTTCTTGGAGGAAAGATCCAGTGTGGTAAAGAGGAACATGTTAAGGCAAAAGCAGGAAAGTCAAGGTCAACGAAGTGGTGGTTGTTGCTCTTAGGAAGCAGCAGCTTATATAAAAACC CGTCGCCATTGCCGTCTATAAATACCTCTCTCTCTCTCTCTCTCCTCGTTTTGCTTTGTAAACTCCATTTTTTTCTAGAGAGAGAAACGAAGAAGCATTGGTTCATTAGCTGAGAGATACAGAACTGAGAATGGGATCGCCGTCCGGCCAGATCAGTGGCTACGATCTCTCATTTAAGGTGCTTCTTATCGGCGATTCCGGCGTCGGTAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTGTCGACAATCTCACTCCTACAATTGGTGTGGATTTCAAGATCAAACAACTTACGATTGGTGGTAAGAGATTGAAGCTGACTATTTGGGATACCGCTGGGCAAGAGAGGTTCAGATCACTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGTATATGATGTGACTCGGAGAGAAACCTTTACAAACCTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAAATCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGGGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTTGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGCGCTAAAACCAGAGAAAATGTAGCGAAATGTTTTGAAGAACTTGCAATTAAGATAATGGAGGTTCCGAGTTTCTTGGAGGAAAGATCCAGTGTGGTAAAGAGGAACATGTTAAGGCAAAAGCAGGAAAGTCAAGGTCAACGAAGTGGTGGTTGTTGCTCTTAGGAAGCAGCAGCTTATATAAAAACC ATGGGATCGCCGTCCGGCCAGATCAGTGGCTACGATCTCTCATTTAAGGTGCTTCTTATCGGCGATTCCGGCGTCGGTAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTGTCGACAATCTCACTCCTACAATTGGTGTGGATTTCAAGATCAAACAACTTACGATTGGTGGTAAGAGATTGAAGCTGACTATTTGGGATACCGCTGGGCAAGAGAGGTTCAGATCACTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGTATATGATGTGACTCGGAGAGAAACCTTTACAAACCTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAAATCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGGGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTTGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGCGCTAAAACCAGAGAAAATGTAGCGAAATGTTTTGAAGAACTTGCAATTAAGATAATGGAGGTTCCGAGTTTCTTGGAGGAAAGATCCAGTGTGGTAAAGAGGAACATGTTAAGGCAAAAGCAGGAAAGTCAAGGTCAACGAAGTGGTGGTTGTTGCTCTTAG MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGKRLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQDCVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVPSFLEERSSVVKRNMLRQKQESQGQRSGGCCS
BLAST of Carg24100 vs. NCBI nr
Match: XP_022925432.1 (ras-related protein RABC2a-like [Cucurbita moschata] >XP_023535218.1 ras-related protein RABC2a-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 413.7 bits (1062), Expect = 3.8e-112 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of Carg24100 vs. NCBI nr
Match: XP_022973510.1 (ras-related protein RABC2a-like [Cucurbita maxima] >XP_022973511.1 ras-related protein RABC2a-like [Cucurbita maxima]) HSP 1 Score: 409.8 bits (1052), Expect = 5.5e-111 Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0
BLAST of Carg24100 vs. NCBI nr
Match: XP_022143972.1 (ras-related protein RABC2a-like [Momordica charantia]) HSP 1 Score: 365.9 bits (938), Expect = 9.1e-98 Identity = 184/211 (87.20%), Postives = 198/211 (93.84%), Query Frame = 0
BLAST of Carg24100 vs. NCBI nr
Match: XP_008463077.1 (PREDICTED: ras-related protein RABC2a-like [Cucumis melo]) HSP 1 Score: 365.5 bits (937), Expect = 1.2e-97 Identity = 187/211 (88.63%), Postives = 198/211 (93.84%), Query Frame = 0
BLAST of Carg24100 vs. NCBI nr
Match: XP_004138376.1 (PREDICTED: ras-related protein RABC2a-like [Cucumis sativus] >KGN45874.1 hypothetical protein Csa_6G016920 [Cucumis sativus]) HSP 1 Score: 365.2 bits (936), Expect = 1.5e-97 Identity = 187/211 (88.63%), Postives = 197/211 (93.36%), Query Frame = 0
BLAST of Carg24100 vs. TAIR10
Match: AT5G03530.1 (RAB GTPase homolog C2A) HSP 1 Score: 336.7 bits (862), Expect = 1.1e-92 Identity = 169/211 (80.09%), Postives = 189/211 (89.57%), Query Frame = 0
BLAST of Carg24100 vs. TAIR10
Match: AT3G09910.1 (RAB GTPase homolog C2B) HSP 1 Score: 299.7 bits (766), Expect = 1.4e-81 Identity = 155/211 (73.46%), Postives = 175/211 (82.94%), Query Frame = 0
BLAST of Carg24100 vs. TAIR10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18) HSP 1 Score: 281.6 bits (719), Expect = 4.1e-76 Identity = 144/212 (67.92%), Postives = 171/212 (80.66%), Query Frame = 0
BLAST of Carg24100 vs. TAIR10
Match: AT3G11730.1 (Ras-related small GTP-binding family protein) HSP 1 Score: 168.7 bits (426), Expect = 3.8e-42 Identity = 96/201 (47.76%), Postives = 125/201 (62.19%), Query Frame = 0
BLAST of Carg24100 vs. TAIR10
Match: AT4G17530.1 (RAB GTPase homolog 1C) HSP 1 Score: 162.2 bits (409), Expect = 3.6e-40 Identity = 97/202 (48.02%), Postives = 124/202 (61.39%), Query Frame = 0
BLAST of Carg24100 vs. Swiss-Prot
Match: sp|O49841|RAC2A_ARATH (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1) HSP 1 Score: 336.7 bits (862), Expect = 1.9e-91 Identity = 169/211 (80.09%), Postives = 189/211 (89.57%), Query Frame = 0
BLAST of Carg24100 vs. Swiss-Prot
Match: sp|Q9SF92|RAC2B_ARATH (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 2.6e-80 Identity = 155/211 (73.46%), Postives = 175/211 (82.94%), Query Frame = 0
BLAST of Carg24100 vs. Swiss-Prot
Match: sp|O23657|RABC1_ARATH (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 7.3e-75 Identity = 144/212 (67.92%), Postives = 171/212 (80.66%), Query Frame = 0
BLAST of Carg24100 vs. Swiss-Prot
Match: sp|Q6DHC1|RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 6.3e-50 Identity = 108/197 (54.82%), Postives = 136/197 (69.04%), Query Frame = 0
BLAST of Carg24100 vs. Swiss-Prot
Match: sp|P36862|YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 1.1e-49 Identity = 101/178 (56.74%), Postives = 127/178 (71.35%), Query Frame = 0
BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A1S3CID4|A0A1S3CID4_CUCME (ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103501313 PE=4 SV=1) HSP 1 Score: 365.5 bits (937), Expect = 7.8e-98 Identity = 187/211 (88.63%), Postives = 198/211 (93.84%), Query Frame = 0
BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A0A0KAL0|A0A0A0KAL0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016920 PE=4 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 1.0e-97 Identity = 187/211 (88.63%), Postives = 197/211 (93.36%), Query Frame = 0
BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A2P5FVJ3|A0A2P5FVJ3_9ROSA (Small GTP-binding domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_025720 PE=4 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 5.4e-91 Identity = 173/210 (82.38%), Postives = 188/210 (89.52%), Query Frame = 0
BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A0D2SGR0|A0A0D2SGR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G412800 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 7.1e-91 Identity = 174/212 (82.08%), Postives = 190/212 (89.62%), Query Frame = 0
BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A1U8IRL3|A0A1U8IRL3_GOSHI (ras-related protein RABC2a OS=Gossypium hirsutum OX=3635 GN=LOC107899493 PE=4 SV=1) HSP 1 Score: 341.7 bits (875), Expect = 1.2e-90 Identity = 174/212 (82.08%), Postives = 190/212 (89.62%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |