Carg00471-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGACTTCTTCTTCGAAAACCAGATCCACCGGCCCGGTGCACCGATCACAGTCGCCGGGCGGACGGTTCTGTAACTCCCCGGCGCTGTCGTCTTTTACGTCGGCGTTTGCTTCATCCACTAGCTTAAACTTTTACTCGCATTCTTCTACTTTCCGTTCCGTTGATCACCGCGATTTCCGCAGCCACCATCATCATCGTCGATGCACCTCCCCTAGCCGTGTTAATGTTTTTTCGTCTCCTTCTCTTACTTCTTCTGTCCGTTTTTTAAATTGATAACCGTTCGATTTCTCCGAATCGGTCCGTTATTGTTTCGAGGAAGAATCATCCGGCGTCTAATGTTAAGAGGACCTGTATGTGCTCTCCGACGACGCATCCACGATCGTTCCGGTGTAGTTTTCACAAAAACGTCTCGAGTAGCCATAGCCAGACGGTGTCGTTTCCTTCAATCAGGTTAAATATGCGGAGATCGGCTATGGCCAACTCGATCGTTCGAATCGGCGGTGTGGAAGGAGAGTTGGTGAAGCGAGCATTGACTACTTTGATTCGGCCTTCGTCGCACCAGCAGAGGAGGATAGCGGCATTTATACCTAGATCAAGTCGGCTCGCTGTCATGTCCAAGGTTGACGATGCTTGAATTTACAGCAGAAGATACGGTGATGCCTAAAACTTTATGATCTCAGGTTCGTTGAAGAGCATCAATTTGTGAACGTTTCTGGTTTAGAATTATAGCCGAAAAGAAAACACACCACACGAAGTTGCATAATCGTTCAAAGCAGTATCTGTAGTGAAATTCATTAGATTCAGAATTTGTGACTCGGAAGCAGGACTACTGAGTCGACTGGCCGAGTGTTGTTCGCAGGCTTCGTGGTTTTTTGGCAGAGGATTGAAGAAGAAGAAGAAGAAAAAAAAAACGAACGAACTTACACCTTTGTACATACAACATTGTTTGCTGTGGAAGGAGAAATTCAGACATTTTTACTTAGAATTGAAACCAAACGAAAGCAAAACAAAATTCGAAGATTAATTTCAACAACCTGCAACCGGCATCAATTTGAAAATGATTTATAACACCGTTGGATGATGAGAATTGTGACCTGCTCAATTCCGTTCTATGTGCAGCCTTGGGCTTCCGTGTGTGCCGCCATCGTGATCTGCTCCGATGATCGTGATTTTCGTCCACGTCGTTTCACGTGGTTCCGCTTAATCCGTCCCGTTCATTCCGGTGCCAGGTATTTATTTCTTTACTTTTGCTATGATTCGTTTATTTAGTTGGTGCAGGACGTGCCGCTGGGTGAAATAAAGTCGTCACGATTCAGGCGCTGA ATGGTGACTTCTTCTTCGAAAACCAGATCCACCGGCCCGGTGCACCGATCACAGTCGCCGGGCGGACGGTTCTGTAACTCCCCGGCGCTGTCGTCTTTTACGTCGGCGTTTGCTTCATCCACTAGCTTAAACTTTTACTCGCATTCTTCTACTTTCCGTTCCGTTGATCACCGCGATTTCCGCAGCCACCATCATCATCGTCGATGCACCTCCCCTAGCCGTGTTAATGTTTTTTCGAAGAATCATCCGGCGTCTAATGTTAAGAGGACCTGTATGTGCTCTCCGACGACGCATCCACGATCGTTCCGGTGTAGTTTTCACAAAAACGTCTCGAGTAGCCATAGCCAGACGGTGTCGTTTCCTTCAATCAGGTTAAATATGCGGAGATCGGCTATGGCCAACTCGATCGTTCGAATCGGCGGTGTGGAAGGAGAGTTGGTGAAGCGAGCATTGACTACTTTGATTCGGCCTTCGTCGCACCAGCAGAGGAGGATAGCGGCATTTATACCTAGATCAAGTCGGCTCGCTGTCATGTCCAAGCCTTGGGCTTCCGTGTGTGCCGCCATCGTGATCTGCTCCGATGATCGTGATTTTCGTCCACGTCGTTTCACGTGGTTCCGCTTAATCCGTCCCGTTCATTCCGGTGCCAGGCGCTGA ATGGTGACTTCTTCTTCGAAAACCAGATCCACCGGCCCGGTGCACCGATCACAGTCGCCGGGCGGACGGTTCTGTAACTCCCCGGCGCTGTCGTCTTTTACGTCGGCGTTTGCTTCATCCACTAGCTTAAACTTTTACTCGCATTCTTCTACTTTCCGTTCCGTTGATCACCGCGATTTCCGCAGCCACCATCATCATCGTCGATGCACCTCCCCTAGCCGTGTTAATGTTTTTTCGAAGAATCATCCGGCGTCTAATGTTAAGAGGACCTGTATGTGCTCTCCGACGACGCATCCACGATCGTTCCGGTGTAGTTTTCACAAAAACGTCTCGAGTAGCCATAGCCAGACGGTGTCGTTTCCTTCAATCAGGTTAAATATGCGGAGATCGGCTATGGCCAACTCGATCGTTCGAATCGGCGGTGTGGAAGGAGAGTTGGTGAAGCGAGCATTGACTACTTTGATTCGGCCTTCGTCGCACCAGCAGAGGAGGATAGCGGCATTTATACCTAGATCAAGTCGGCTCGCTGTCATGTCCAAGCCTTGGGCTTCCGTGTGTGCCGCCATCGTGATCTGCTCCGATGATCGTGATTTTCGTCCACGTCGTTTCACGTGGTTCCGCTTAATCCGTCCCGTTCATTCCGGTGCCAGGCGCTGA MVTSSSKTRSTGPVHRSQSPGGRFCNSPALSSFTSAFASSTSLNFYSHSSTFRSVDHRDFRSHHHHRRCTSPSRVNVFSKNHPASNVKRTCMCSPTTHPRSFRCSFHKNVSSSHSQTVSFPSIRLNMRRSAMANSIVRIGGVEGELVKRALTTLIRPSSHQQRRIAAFIPRSSRLAVMSKPWASVCAAIVICSDDRDFRPRRFTWFRLIRPVHSGARR
BLAST of Carg00471-RA vs. NCBI nr
Match: XP_022981771.1 (uncharacterized protein LOC111480822 [Cucurbita maxima] >XP_022981772.1 uncharacterized protein LOC111480822 [Cucurbita maxima] >XP_022981773.1 uncharacterized protein LOC111480822 [Cucurbita maxima] >XP_022981774.1 uncharacterized protein LOC111480822 [Cucurbita maxima]) HSP 1 Score: 287.0 bits (733), Expect = 5.5e-74 Identity = 162/209 (77.51%), Postives = 167/209 (79.90%), Query Frame = 0
BLAST of Carg00471-RA vs. NCBI nr
Match: XP_023524377.1 (uncharacterized protein LOC111788286 [Cucurbita pepo subsp. pepo] >XP_023524379.1 uncharacterized protein LOC111788286 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 253.1 bits (645), Expect = 8.8e-64 Identity = 147/209 (70.33%), Postives = 151/209 (72.25%), Query Frame = 0
BLAST of Carg00471-RA vs. NCBI nr
Match: XP_022142372.1 (uncharacterized protein DDB_G0271670 [Momordica charantia]) HSP 1 Score: 213.8 bits (543), Expect = 5.9e-52 Identity = 130/207 (62.80%), Postives = 139/207 (67.15%), Query Frame = 0
BLAST of Carg00471-RA vs. NCBI nr
Match: XP_022976197.1 (uncharacterized protein LOC111476660 [Cucurbita maxima]) HSP 1 Score: 210.3 bits (534), Expect = 6.6e-51 Identity = 129/209 (61.72%), Postives = 136/209 (65.07%), Query Frame = 0
BLAST of Carg00471-RA vs. NCBI nr
Match: XP_008452898.1 (PREDICTED: putative protein TPRXL [Cucumis melo] >ADN34124.1 serine-rich protein [Cucumis melo subsp. melo]) HSP 1 Score: 209.5 bits (532), Expect = 1.1e-50 Identity = 130/207 (62.80%), Postives = 137/207 (66.18%), Query Frame = 0
BLAST of Carg00471-RA vs. TAIR10
Match: AT5G11090.1 (serine-rich protein-related) HSP 1 Score: 141.4 bits (355), Expect = 6.8e-34 Identity = 100/218 (45.87%), Postives = 123/218 (56.42%), Query Frame = 0
BLAST of Carg00471-RA vs. TAIR10
Match: AT5G25280.1 (serine-rich protein-related) HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30 Identity = 99/220 (45.00%), Postives = 121/220 (55.00%), Query Frame = 0
BLAST of Carg00471-RA vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related) HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14 Identity = 49/118 (41.53%), Postives = 66/118 (55.93%), Query Frame = 0
BLAST of Carg00471-RA vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related) HSP 1 Score: 43.5 bits (101), Expect = 1.9e-04 Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0
BLAST of Carg00471-RA vs. TAIR10
Match: AT1G67910.1 (unknown protein) HSP 1 Score: 42.4 bits (98), Expect = 4.3e-04 Identity = 20/58 (34.48%), Postives = 30/58 (51.72%), Query Frame = 0
BLAST of Carg00471-RA vs. TrEMBL
Match: tr|A0A1S3BUD9|A0A1S3BUD9_CUCME (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103493784 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 7.4e-51 Identity = 130/207 (62.80%), Postives = 137/207 (66.18%), Query Frame = 0
BLAST of Carg00471-RA vs. TrEMBL
Match: tr|E5GCC5|E5GCC5_CUCME (Serine-rich protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 7.4e-51 Identity = 130/207 (62.80%), Postives = 137/207 (66.18%), Query Frame = 0
BLAST of Carg00471-RA vs. TrEMBL
Match: tr|A0A0A0L364|A0A0A0L364_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652810 PE=4 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 8.2e-50 Identity = 128/207 (61.84%), Postives = 135/207 (65.22%), Query Frame = 0
BLAST of Carg00471-RA vs. TrEMBL
Match: tr|K7KTG2|K7KTG2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100775494 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 4.4e-35 Identity = 103/212 (48.58%), Postives = 120/212 (56.60%), Query Frame = 0
BLAST of Carg00471-RA vs. TrEMBL
Match: tr|A0A251JTP5|A0A251JTP5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G120900 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 7.4e-35 Identity = 110/212 (51.89%), Postives = 128/212 (60.38%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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