Carg07815-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07815-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	lysine-specific demethylase JMJ25
Location	Cucurbita_argyrosperma_scaffold_066 : 338777 .. 339848 (-)
Sequence length	970

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAACAATAAATGTTGAATATATTTTAACGCCCTCCTTCCTCCTCCCTCTTCTTTTCTATTGCATTTTTTCTGCAGCAAAGATTGGGTTTTTTGGGTGCCGAGCTTTCTGGGTTTTCTTCATCTGATTGTTTCCTGTAAGGGAAATTGTATTAGTTTGGGAGCGCTAATGGAAGAAGAAGAAGAAGGACTTCCGGACCATTTGCGGTGCAAGAGGACTGATGGGAAGCAATGGCGTTGCAAACGGAGAGTAAAGGACAATCTCAAGCTCTGTGAAATTCACCATCTCCAAGGCCGCCATCGCCAGTACAAGGAGAAAGTACCGGATTCTCTCAAACTTCAAAGGACCAGCAGGAAATCGATTGAAACGGATTCAAACGTTGAAAATCTCGTAATTAGGGCCCCGAAAGCGGCAACACTCGCAAAACTAATGAAGAGGAAGAAATTGGCGGGGACTTCAGCGGCATTGGATGGGATGCTCACTAGAATGAAGAAAAAGAAAGGGAGTGTGCAGGTGGAGTTGATAAGGATGGTGCTGAGAAGGGAAGTGGAGAAGAGAGGAAAAAAAAAGGTTGTCCACAAGGCGAGGAAGAGGCTGAAGAATCAAGGTAATGGAATTGAGTCAGAGGAGAACAGTGATAAGGAAATGACGAGACAATTGCCCTATGGACTTATGGCAATTTCTCCTTCTCCATCCCCTCTTCAATCTGGCAATGAAGGTTCTTCTTGCGGAATCAAGGTTGGGGCACAATCAAGGCCGATTCAACAACGGCGATTTCGGTCCAAGAATGTCAATATTCTTCCAGTTGGCGAGTTGCAGGTAAAGATATTCGTTTCTGTTCGACTCATATGGTTTGATTAGTGATTCAATTTGTTGATATAAATGGTTTCTTCTATTTCGTTTTCGGCATTTCCCCCTTAGGTTCTACCAAATGGGCGTAATGTGGGGAACTTGAGAAAATCTAGGAGGAAGAAGTGCCATTGGTGTCAAGAAAGTAGTTCATGGAGTTTAATTCAGTGTTCGAGTTGTCAAAAAACGTTCTTTTGCATAGACTGCATCAGAGATCGGTAA

mRNA sequence

TAATAACAATAAATGTTGAATATATTTTAACGCCCTCCTTCCTCCTCCCTCTTCTTTTCTATTGCATTTTTTCTGCAGCAAAGATTGGGTTTTTTGGGTGCCGAGCTTTCTGGGTTTTCTTCATCTGATTGTTTCCTGTAAGGGAAATTGTATTAGTTTGGGAGCGCTAATGGAAGAAGAAGAAGAAGGACTTCCGGACCATTTGCGGTGCAAGAGGACTGATGGGAAGCAATGGCGTTGCAAACGGAGAGTAAAGGACAATCTCAAGCTCTGTGAAATTCACCATCTCCAAGGCCGCCATCGCCAGTACAAGGAGAAAGTACCGGATTCTCTCAAACTTCAAAGGACCAGCAGGAAATCGATTGAAACGGATTCAAACGTTGAAAATCTCGTAATTAGGGCCCCGAAAGCGGCAACACTCGCAAAACTAATGAAGAGGAAGAAATTGGCGGGGACTTCAGCGGCATTGGATGGGATGCTCACTAGAATGAAGAAAAAGAAAGGGAGTGTGCAGGTGGAGTTGATAAGGATGGTGCTGAGAAGGGAAGTGGAGAAGAGAGGAAAAAAAAAGGTTGTCCACAAGGCGAGGAAGAGGCTGAAGAATCAAGGTAATGGAATTGAGTCAGAGGAGAACAGTGATAAGGAAATGACGAGACAATTGCCCTATGGACTTATGGCAATTTCTCCTTCTCCATCCCCTCTTCAATCTGGCAATGAAGGTTCTTCTTGCGGAATCAAGGTTGGGGCACAATCAAGGCCGATTCAACAACGGCGATTTCGGTCCAAGAATGTCAATATTCTTCCAGTTGGCGAGTTGCAGGTTCTACCAAATGGGCGTAATGTGGGGAACTTGAGAAAATCTAGGAGGAAGAAGTGCCATTGGTGTCAAGAAAGTAGTTCATGGAGTTTAATTCAGTGTTCGAGTTGTCAAAAAACGTTCTTTTGCATAGACTGCATCAGAGATCGGTAA

Coding sequence (CDS)

ATGGAAGAAGAAGAAGAAGGACTTCCGGACCATTTGCGGTGCAAGAGGACTGATGGGAAGCAATGGCGTTGCAAACGGAGAGTAAAGGACAATCTCAAGCTCTGTGAAATTCACCATCTCCAAGGCCGCCATCGCCAGTACAAGGAGAAAGTACCGGATTCTCTCAAACTTCAAAGGACCAGCAGGAAATCGATTGAAACGGATTCAAACGTTGAAAATCTCGTAATTAGGGCCCCGAAAGCGGCAACACTCGCAAAACTAATGAAGAGGAAGAAATTGGCGGGGACTTCAGCGGCATTGGATGGGATGCTCACTAGAATGAAGAAAAAGAAAGGGAGTGTGCAGGTGGAGTTGATAAGGATGGTGCTGAGAAGGGAAGTGGAGAAGAGAGGAAAAAAAAAGGTTGTCCACAAGGCGAGGAAGAGGCTGAAGAATCAAGGTAATGGAATTGAGTCAGAGGAGAACAGTGATAAGGAAATGACGAGACAATTGCCCTATGGACTTATGGCAATTTCTCCTTCTCCATCCCCTCTTCAATCTGGCAATGAAGGTTCTTCTTGCGGAATCAAGGTTGGGGCACAATCAAGGCCGATTCAACAACGGCGATTTCGGTCCAAGAATGTCAATATTCTTCCAGTTGGCGAGTTGCAGGTTCTACCAAATGGGCGTAATGTGGGGAACTTGAGAAAATCTAGGAGGAAGAAGTGCCATTGGTGTCAAGAAAGTAGTTCATGGAGTTTAATTCAGTGTTCGAGTTGTCAAAAAACGTTCTTTTGCATAGACTGCATCAGAGATCGGTAA

Protein sequence

MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRTSRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIRMVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQSGNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQESSSWSLIQCSSCQKTFFCIDCIRDR

Homology

[Close]

BLAST of Carg07815-RA vs. NCBI nr
Match: XP_022926801.1 (lysine-specific demethylase JMJ25-like [Cucurbita moschata])

HSP 1 Score: 517.7 bits (1332), Expect = 2.3e-143
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60
           MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT
Sbjct: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60

Query: 61  SRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120
           SRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR
Sbjct: 61  SRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120

Query: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180
           MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS
Sbjct: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180

Query: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240
           GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ
Sbjct: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240

Query: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 267
           ESSSWSLIQCSSCQKTFFCIDCIRDR
Sbjct: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 266

[Close]

BLAST of Carg07815-RA vs. NCBI nr
Match: XP_023003430.1 (lysine-specific demethylase JMJ25-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 516.5 bits (1329), Expect = 5.2e-143
Identity = 265/266 (99.62%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60
           MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT
Sbjct: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60

Query: 61  SRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120
           +RKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR
Sbjct: 61  NRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120

Query: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180
           MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS
Sbjct: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180

Query: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240
           GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ
Sbjct: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240

Query: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 267
           ESSSWSLIQCSSCQKTFFCIDCIRDR
Sbjct: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 266

[Close]

BLAST of Carg07815-RA vs. NCBI nr
Match: XP_023003429.1 (lysine-specific demethylase JMJ25-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 516.5 bits (1329), Expect = 5.2e-143
Identity = 265/266 (99.62%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60
           MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT
Sbjct: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60

Query: 61  SRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120
           +RKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR
Sbjct: 61  NRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120

Query: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180
           MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS
Sbjct: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180

Query: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240
           GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ
Sbjct: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240

Query: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 267
           ESSSWSLIQCSSCQKTFFCIDCIRDR
Sbjct: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 266

[Close]

BLAST of Carg07815-RA vs. NCBI nr
Match: XP_023518038.1 (lysine-specific demethylase JMJ25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515.8 bits (1327), Expect = 8.9e-143
Identity = 265/266 (99.62%), Postives = 265/266 (99.62%), Query Frame = 0


Query: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60
           MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT
Sbjct: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60

Query: 61  SRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120
            RKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR
Sbjct: 61  CRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120

Query: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180
           MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS
Sbjct: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180

Query: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240
           GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ
Sbjct: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240

Query: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 267
           ESSSWSLIQCSSCQKTFFCIDCIRDR
Sbjct: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 266

[Close]

BLAST of Carg07815-RA vs. NCBI nr
Match: XP_022142226.1 (lysine-specific demethylase JMJ25 isoform X1 [Momordica charantia])

HSP 1 Score: 417.9 bits (1073), Expect = 2.5e-113
Identity = 215/266 (80.83%), Postives = 235/266 (88.35%), Query Frame = 0


Query: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60
           MEEEEE LPDHLRCKRTDGKQWRCKRRV DNLKLCEIH+LQ                QRT
Sbjct: 1   MEEEEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQXXXXXXXXXXXXXXXXQRT 60

Query: 61  SRKSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIR 120
           SR+SI+TDSN+EN+VIRAP+AATLAKLMKRKKLAG SAALDGML RMK KKGS+Q+ELIR
Sbjct: 61  SRRSIDTDSNIENVVIRAPRAATLAKLMKRKKLAGASAALDGMLNRMKMKKGSMQLELIR 120

Query: 121 MVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQS 180
           MVLRREVEKR KKKV+ KA KR+KN+GN  E EENSD+EMTRQLP GLMAISPSPSPLQS
Sbjct: 121 MVLRREVEKRRKKKVLEKASKRMKNKGNETELEENSDEEMTRQLPNGLMAISPSPSPLQS 180

Query: 181 GNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWCQ 240
           GNEGSSCGIK+GA+SRPIQQRRFRSKNVNILP+G+LQV+P GRNVGNLRK +RKKCHWCQ
Sbjct: 181 GNEGSSCGIKIGAESRPIQQRRFRSKNVNILPLGDLQVVPYGRNVGNLRKCKRKKCHWCQ 240

Query: 241 ESSSWSLIQCSSCQKTFFCIDCIRDR 267
           +SSSWSL QCSSCQKTFFCIDCIR+R
Sbjct: 241 KSSSWSLTQCSSCQKTFFCIDCIRER 266

[Close]

BLAST of Carg07815-RA vs. TAIR10
Match: AT4G21430.1 (Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase)

HSP 1 Score: 188.7 bits (478), Expect = 4.5e-48
Identity = 118/269 (43.87%), Postives = 165/269 (61.34%), Query Frame = 0


Query: 4   EEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRTSR- 63
           E E +PD  RC R+DGKQWRCKRR  +  K+CE HH Q   ++ K+KV +S KL R+ R 
Sbjct: 3   ENEIVPDEFRCNRSDGKQWRCKRRALEGKKMCESHHSQQSLKRSKQKVAESSKLVRSRRG 62

Query: 64  -----KSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVE 123
                 S E + N   +     ++  L K  KRK++ G + A+D  + +MK K+G +Q++
Sbjct: 63  GGDEVASSEIEPNESRI-----RSKRLGK-SKRKRVMGEAEAMDEAVKKMKLKRGDLQLD 122

Query: 124 LIRMVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSP 183
           LIRMVL+REVEKR  K++ +   K+  N G      E   +E+TR LP G+MAISP PSP
Sbjct: 123 LIRMVLKREVEKR--KRLPNSNNKKKSNGG----FSEFVGEELTRVLPNGIMAISP-PSP 182

Query: 184 LQSGNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCH 243
             S N  S C +KVG +   + +RRFRSKN+  LP+G++QV+P   ++ N RK ++ +CH
Sbjct: 183 TTS-NVSSPCDVKVGEEPISMIKRRFRSKNIEPLPIGKMQVVPFKGDLVNGRKEKKMRCH 242

Query: 244 WCQESSSWSLIQCSSCQKTFFCIDCIRDR 267
           WC       LI C SC++ FFCIDCI  R
Sbjct: 243 WCGTRGFGDLISCLSCEREFFCIDCIEKR 257

[Close]

BLAST of Carg07815-RA vs. TAIR10
Match: AT4G37740.1 (growth-regulating factor 2)

HSP 1 Score: 48.1 bits (113), Expect = 9.6e-06
Identity = 29/75 (38.67%), Postives = 35/75 (46.67%), Query Frame = 0


Query: 9   PDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRTSRKSIETD 68
           P+  RC+RTDGK+WRC R    + K CE H  +GRHR               SRK +E  
Sbjct: 228 PEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHR---------------SRKPVEVQ 287

Query: 69  SNVENLVIRAPKAAT 84
           S        A KA T
Sbjct: 288 SGQNQTAAAASKAVT 287

[Close]

BLAST of Carg07815-RA vs. TAIR10
Match: AT1G09060.3 (Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-05
Identity = 26/70 (37.14%), Postives = 36/70 (51.43%), Query Frame = 0


Query: 3   EEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRTSR 62
           E   G+PD LRCKR+DGKQWRC      +  +CE H++Q + R        + K  +   
Sbjct: 33  ESIPGIPDDLRCKRSDGKQWRCTAMSMADKTVCEKHYIQAKKRAANSAFRANQKKAKRRS 92

Query: 63  KSIETDSNVE 73
              ETD+  E
Sbjct: 93  SLGETDTYSE 102

[Close]

BLAST of Carg07815-RA vs. TAIR10
Match: AT2G22840.1 (growth-regulating factor 1)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-05
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 0


Query: 9   PDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYK 49
           P+  RC+RTDGK+WRC R    + K CE H  +GRHR  K
Sbjct: 197 PEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRK 236

[Close]

BLAST of Carg07815-RA vs. TAIR10
Match: AT5G53660.1 (growth-regulating factor 7)

HSP 1 Score: 45.1 bits (105), Expect = 8.1e-05
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 0


Query: 13  RCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVP 53
           RC+RTDGK+WRC + V  N K CE H  +GR R  K   P
Sbjct: 112 RCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVEP 151

[Close]

BLAST of Carg07815-RA vs. Swiss-Prot
Match: sp|Q8L8A8|GRF2_ARATH (Growth-regulating factor 2 OS=Arabidopsis thaliana OX=3702 GN=GRF2 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 29/75 (38.67%), Postives = 35/75 (46.67%), Query Frame = 0


Query: 9   PDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRTSRKSIETD 68
           P+  RC+RTDGK+WRC R    + K CE H  +GRHR               SRK +E  
Sbjct: 228 PEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHR---------------SRKPVEVQ 287

Query: 69  SNVENLVIRAPKAAT 84
           S        A KA T
Sbjct: 288 SGQNQTAAAASKAVT 287

[Close]

BLAST of Carg07815-RA vs. Swiss-Prot
Match: sp|O81001|GRF1_ARATH (Growth-regulating factor 1 OS=Arabidopsis thaliana OX=3702 GN=GRF1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.0e-04
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 0


Query: 9   PDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYK 49
           P+  RC+RTDGK+WRC R    + K CE H  +GRHR  K
Sbjct: 197 PEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRK 236

[Close]

BLAST of Carg07815-RA vs. Swiss-Prot
Match: sp|Q6AWY3|GRF6_ORYSJ (Growth-regulating factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF6 PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 5.0e-04
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 0


Query: 9   PDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYK 49
           P+  RC+RTDGK+WRC R    + K CE H  +GRHR  K
Sbjct: 224 PEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRK 263

[Close]

BLAST of Carg07815-RA vs. TrEMBL
Match: tr|A0A1S3B0M7|A0A1S3B0M7_CUCME (lysine-specific demethylase JMJ25 OS=Cucumis melo OX=3656 GN=LOC103484564 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 2.7e-103
Identity = 205/267 (76.78%), Postives = 220/267 (82.40%), Query Frame = 0


Query: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60
           MEEE+E LPDHLRCKRTDGKQWRCKRRV DNLKLCEIH+LQ                QRT
Sbjct: 1   MEEEDEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQXXXXXXXXXXXXXXXXQRT 60

Query: 61  SRKSIETDSNVENLVIRA-PKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELI 120
           +RKSI+TDSNVEN+VIRA PKAATLAKLMKRKKL G SAALDGML RMK KKGS+Q ELI
Sbjct: 61  NRKSIDTDSNVENVVIRASPKAATLAKLMKRKKLGGASAALDGMLNRMKMKKGSMQFELI 120

Query: 121 RMVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQ 180
           +MVLRREVEKR           R+KN GN IE EENSDKEMTRQLP GLMAISPSPSPLQ
Sbjct: 121 KMVLRREVEKRRXXXXXXXXXXRMKNSGNEIELEENSDKEMTRQLPNGLMAISPSPSPLQ 180

Query: 181 SGNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWC 240
           SGNEGSSCG K+GA+SRPIQ RRFRSKNVNILPVG+LQVLP GRNVG  RK +RKKCH C
Sbjct: 181 SGNEGSSCGTKIGAESRPIQPRRFRSKNVNILPVGDLQVLPYGRNVGRSRKCKRKKCHGC 240

Query: 241 QESSSWSLIQCSSCQKTFFCIDCIRDR 267
           Q+S+SWSL QCSSCQKTFFCIDCIR+R
Sbjct: 241 QKSTSWSLTQCSSCQKTFFCIDCIRER 267

[Close]

BLAST of Carg07815-RA vs. TrEMBL
Match: tr|A0A0A0KHI0|A0A0A0KHI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516830 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 3.5e-103
Identity = 204/267 (76.40%), Postives = 220/267 (82.40%), Query Frame = 0


Query: 1   MEEEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRT 60
           MEEE+E LPDHLRCKRTDGKQWRCKRRV DNLKLCEIH+LQ                QRT
Sbjct: 1   MEEEDEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQXXXXXXXXXXXXXXXXQRT 60

Query: 61  SRKSIETDSNVENLVIRA-PKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELI 120
           +RKSI+TDSNVEN+VIRA PKAATLAKLMKRKKL G S ALDGML RMK KKG++Q ELI
Sbjct: 61  NRKSIDTDSNVENVVIRASPKAATLAKLMKRKKLGGASVALDGMLNRMKMKKGNMQFELI 120

Query: 121 RMVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQ 180
           +MVLRREVEKR           R+KN GN IE EENSDKEMTRQLP GLMAISPSPSPLQ
Sbjct: 121 KMVLRREVEKRXXXXXXXXXXXRMKNTGNEIELEENSDKEMTRQLPNGLMAISPSPSPLQ 180

Query: 181 SGNEGSSCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWC 240
           SGNEGSSCG K+GA+SRPIQQRRFRSKNVNILPVG+LQVLP GRNVG  RK +RKKCH C
Sbjct: 181 SGNEGSSCGTKIGAESRPIQQRRFRSKNVNILPVGDLQVLPYGRNVGKSRKCKRKKCHGC 240

Query: 241 QESSSWSLIQCSSCQKTFFCIDCIRDR 267
           Q+S+SWSL QCSSCQKTFFCIDCIR+R
Sbjct: 241 QKSTSWSLTQCSSCQKTFFCIDCIRER 267

[Close]

BLAST of Carg07815-RA vs. TrEMBL
Match: tr|A0A2P5BKP0|A0A2P5BKP0_PARAD (WRC domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_231050 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.1e-60
Identity = 145/272 (53.31%), Postives = 182/272 (66.91%), Query Frame = 0


Query: 3   EEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRTSR 62
           EE+E LPDHLRC RTDG+QWRCKRRVK+N+KLCEIH+LQGRHRQ KE VP+SLKLQR + 
Sbjct: 2   EEDEALPDHLRCNRTDGRQWRCKRRVKENMKLCEIHYLQGRHRQNKEIVPESLKLQRKTT 61

Query: 63  K---SIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELI 122
           K   ++  D N  ++ IRA K   LAKL+KRK+   T        +  K K+G++++ELI
Sbjct: 62  KKKVALHRDLNHRSVKIRAKKEDILAKLVKRKRSGETLGK-----SMKKLKEGNMELELI 121

Query: 123 RMVLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPS--PSP 182
           RMVL+REVEK   K +                         TR LP GLMAIS S  PSP
Sbjct: 122 RMVLKREVEKCTVKSM--XXXXXXXXXXXXXXXXXXXXXXXTRDLPNGLMAISSSSPPSP 181

Query: 183 LQ-SGNEGSS--CGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRK 242
            Q S N GS     +KVG   RP+QQRRFRSKN   LP+G+LQ+LP  ++V NL +++RK
Sbjct: 182 RQRSCNVGSDSPVRVKVGVDFRPVQQRRFRSKNSEALPIGKLQILPCAQSVANLSRAKRK 241

Query: 243 KCHWCQESSSWSLIQCSSCQKTFFCIDCIRDR 267
           KCHWC+ S S +LI+CSSCQK FFC+DCI++R
Sbjct: 242 KCHWCRRSGSRTLIKCSSCQKQFFCLDCIKER 266

[Close]

BLAST of Carg07815-RA vs. TrEMBL
Match: tr|F6I740|F6I740_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0203g00120 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.2e-60
Identity = 141/269 (52.42%), Postives = 179/269 (66.54%), Query Frame = 0


Query: 3   EEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRTSR 62
           EEEE LPDHLRCKRTDG+QWRC RRV +N KLCE+H+LQGRHRQ KEKVP SLKLQR  R
Sbjct: 2   EEEEALPDHLRCKRTDGRQWRCTRRVMENKKLCELHYLQGRHRQNKEKVPGSLKLQRKKR 61

Query: 63  -KSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIRM 122
            K++  D    N  IRA +AA LAK MKR+     S ALD  L +MK KKG +Q+ELIR+
Sbjct: 62  NKTVNQDCESRNPEIRAKRAAKLAKPMKRRGSVRVSEALDKALKKMKLKKGDLQLELIRV 121

Query: 123 VLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQSG 182
            L+R+VE+R  ++++                 +N + E+ R+LP GLMAIS +P      
Sbjct: 122 FLQRQVERRKMRRLI-----------------QNIEGELVRELPNGLMAISQAPLQHHID 181

Query: 183 NEGS--SCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWC 242
           N GS    G+ +G+ S P  QR FRSKN+  LP+G LQV+P GRNV NL+  R KKCH C
Sbjct: 182 NAGSQIKLGVDLGSDSGP--QRCFRSKNIEPLPIGSLQVVPYGRNVRNLKIVRGKKCHLC 241

Query: 243 QESS--SWSLIQCSSCQKTFFCIDCIRDR 267
           ++    S S+I+CSSC K +FC+DCI+ R
Sbjct: 242 RKRKRHSQSMIKCSSCLKEYFCMDCIKQR 251

[Close]

BLAST of Carg07815-RA vs. TrEMBL
Match: tr|A5C057|A5C057_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042729 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.4e-59
Identity = 140/269 (52.04%), Postives = 178/269 (66.17%), Query Frame = 0


Query: 3   EEEEGLPDHLRCKRTDGKQWRCKRRVKDNLKLCEIHHLQGRHRQYKEKVPDSLKLQRTSR 62
           EEEE LPD LRCKRTDG+QWRC RRV +N KLCE+H+LQGRHRQ KEKVP SLKLQR  R
Sbjct: 89  EEEEALPDQLRCKRTDGRQWRCTRRVMENKKLCELHYLQGRHRQNKEKVPGSLKLQRKKR 148

Query: 63  -KSIETDSNVENLVIRAPKAATLAKLMKRKKLAGTSAALDGMLTRMKKKKGSVQVELIRM 122
            K++  D    N  IRA +A  LAK MKR+     S ALD  L +MK KKG +Q+ELIR+
Sbjct: 149 NKTVNQDCESRNPEIRAKRAVKLAKPMKRRGSVRVSEALDKALKKMKLKKGDLQLELIRV 208

Query: 123 VLRREVEKRGKKKVVHKARKRLKNQGNGIESEENSDKEMTRQLPYGLMAISPSPSPLQSG 182
            L+R+VE+R  ++++                 +N + E+ R+LP GLMAIS +P      
Sbjct: 209 FLQRQVERRKMRRLI-----------------QNIEGELVRELPNGLMAISQAPLQHHID 268

Query: 183 NEGS--SCGIKVGAQSRPIQQRRFRSKNVNILPVGELQVLPNGRNVGNLRKSRRKKCHWC 242
           N GS    G+ +G+ S P  QR FRSKN+  LP+G LQV+P GRNV NL+  R KKCH C
Sbjct: 269 NAGSQIKLGVDLGSDSGP--QRCFRSKNIEPLPIGSLQVVPYGRNVRNLKIVRGKKCHLC 328

Query: 243 QESS--SWSLIQCSSCQKTFFCIDCIRDR 267
           ++    S S+I+CSSCQK +FC+DCI+ R
Sbjct: 329 RKRKRHSQSMIKCSSCQKEYFCMDCIKQR 338

The following BLAST results are available for this feature:

BLAST of Carg07815-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926801.1	2.3e-143	100.00	lysine-specific demethylase JMJ25-like [Cucurbita moschata]	[more]
XP_023003430.1	5.2e-143	99.62	lysine-specific demethylase JMJ25-like isoform X2 [Cucurbita maxima]	[more]
XP_023003429.1	5.2e-143	99.62	lysine-specific demethylase JMJ25-like isoform X1 [Cucurbita maxima]	[more]
XP_023518038.1	8.9e-143	99.62	lysine-specific demethylase JMJ25-like [Cucurbita pepo subsp. pepo]	[more]
XP_022142226.1	2.5e-113	80.83	lysine-specific demethylase JMJ25 isoform X1 [Momordica charantia]	[more]

BLAST of Carg07815-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21430.1	4.5e-48	43.87	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase	[more]
AT4G37740.1	9.6e-06	38.67	growth-regulating factor 2	[more]
AT1G09060.3	1.2e-05	37.14	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase	[more]
AT2G22840.1	2.8e-05	52.50	growth-regulating factor 1	[more]
AT5G53660.1	8.1e-05	52.50	growth-regulating factor 7	[more]

BLAST of Carg07815-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L8A8\|GRF2_ARATH	1.7e-04	38.67	Growth-regulating factor 2 OS=Arabidopsis thaliana OX=3702 GN=GRF2 PE=1 SV=1	[more]
sp\|O81001\|GRF1_ARATH	5.0e-04	52.50	Growth-regulating factor 1 OS=Arabidopsis thaliana OX=3702 GN=GRF1 PE=1 SV=1	[more]
sp\|Q6AWY3\|GRF6_ORYSJ	5.0e-04	52.50	Growth-regulating factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF6 PE=2...	[more]

BLAST of Carg07815-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B0M7\|A0A1S3B0M7_CUCME	2.7e-103	76.78	lysine-specific demethylase JMJ25 OS=Cucumis melo OX=3656 GN=LOC103484564 PE=4 S...	[more]
tr\|A0A0A0KHI0\|A0A0A0KHI0_CUCSA	3.5e-103	76.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516830 PE=4 SV=1	[more]
tr\|A0A2P5BKP0\|A0A2P5BKP0_PARAD	2.1e-60	53.31	WRC domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_231...	[more]
tr\|F6I740\|F6I740_VITVI	6.2e-60	52.42	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0203g00120 PE=4 SV=...	[more]
tr\|A5C057\|A5C057_VITVI	2.4e-59	52.04	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042729 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR014977	WRC_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg07815	Carg07815	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07815-RA.CDS.2	Carg07815-RA.CDS.2	CDS
Carg07815-RA.CDS.1	Carg07815-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07815-RA.five_prime_UTR.1	Carg07815-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07815-RA.exon.2	Carg07815-RA.exon.2	exon
Carg07815-RA.exon.1	Carg07815-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg07815-RA	Carg07815-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014977	WRC domain	PFAM	PF08879	WRC	coord: 9..50 e-value: 1.3E-15 score: 56.8
IPR014977	WRC domain	PROSITE	PS51667	WRC	coord: 8..54 score: 20.806
None	No IPR available	PANTHER	PTHR12549	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	coord: 3..266
None	No IPR available	PANTHER	PTHR12549:SF13	PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING PROTEIN	coord: 3..266