Carg24704 (gene) Silver-seed gourd

NameCarg24704
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_270 : 37456 .. 38936 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAGAAAAAAAGGAAAGAGAGGAATGGGGTTTCTCTCGCTTTTAGCATAGCGGGCCCCAACGGGAGGCCCACACGACGGGCTATTAGTTCAGTGGTAGAGCGCGCCCCTGATAATTGCGTCATTGTGCCTGAGCTGTGAGGGCTCTTAACCACATGAATAGTTCAACATGCTCATCAACGCCTGACCTTGAGATGTGGATCATCCAAGGCACATTAGCATGACGTACTTCTCCTATTTGAACCGGGGTTTGAAACCAAACTTCTCTTCAGGAGGATAGATGGGTTGATTCACCTATCTCACGATCCAGCCCCCTTAGAGGCCCAACGTCCTCGTTGGCACACCTCTCGGTGTCAGGCTCTGATACCATTTGTAACAACTCAAGCCCACCGCTAGCATATATTGTCTTCTTTGAGCTTTTCCTTTTGGGATTCCCCTCAAGTTTTTAAAACCAGGTCTATTCGGGAGAGGTTTCCACACTCTTATAAGAAATGCTTCGTACCCCTCTCCAACCAACGTGAGATCCATTAAGGATTACTTCCCCTTTTATCTCTCCAAACAGCTCTATATAGTTATATCCTTCACTAATTTGTACAGTTGAGCTTTGGAATGAAATGAATACAACTTCCATGTATTCCGCAGGGTAGGAAGCTAGCATGGTGTTCTCTAATGGCGGGGGAGATAAATGCATATAAAAGAAGACAAGTCGCCTCATCAAGATCATACTTCCAACAAATCCCCCTCTGCCAAAAGATTAAATCTCTAAACTACGGAGTTCAACTACCCCACCATTCAAGAACACCATAAACATGATTCGCAGTAAGTTCCAGAAAAAAAATGGATCAACCAAAAACACAGAAGAGGAAACAAGATGATCAAATTTGAAAAGGGTAGTGATGATCTGAAACCTTGGGTTTGATGATCGTACGAAGCAGATGGTTGAACCCCATTTCTTGTTCTAGGCGAAGCACTCAAAATGTTGTTCCTGTGCAAGCAAAGAAAGAAAGAGCAGTTGGTGAGCAAGTTCTTCTATAAGAAGAAGATGCTTTCGGCCGATTACATATCTATTTGTAGAACAGTTTGTTTTATGAATGATTTTGTCTCGAAAACGTCAAATTTTAGCTATTAATCTGTAAAGTTGCTTGATTAGTCGGTTAATTGTAATTATTTTTATATAAATTACGAATTTAGTACACTTTTGTGTATATATACATTTTGATTAAAATTATCCATTCGTAGAATGACGGACGTGTTTAATTTTTCGTCTGGATCCGACCCAAATGGAGCTTATTCGGCGATAGCCCGGATTGGTTGCTCCGTTCATCTTTCCGGCGAAAAGGGATGAAAATCCGGCGACGAAGGAGCTTCGAATTAAGCCTCGGCGGCAATGGAATCTCCCGTCGATTCTTCTTCTTCTTTTGTTAGTTCGTTTTAATTTCTGCAGCGCCGCATCACCTGTCTCGCCCCTTCCGAGGTAA

mRNA sequence

ATGGGGGAGAAAAAAAGGAAAGAGAGGAATGGGGTTTCTCTCGCTTTTAGCATAGCGGGCCCCAACGGGAGGCCCACACGACGGGCTATTAGTTCAGTGGTAGAGCGCGCCCCTGATAATTGCGTCATTGTGCCTGAGCTGCGAAGCACTCAAAATGTTGTTCCTGTGCAAGCAAAGAAAGAAAGAGCAGTTGGTGAGCAACCCGGATTGGTTGCTCCGTTCATCTTTCCGGCGAAAAGGGATGAAAATCCGGCGACGAAGGAGCTTCGAATTAAGCCTCGGCGGCAATGGAATCTCCCGTCGATTCTTCTTCTTCTTTTGTTAGTTCGTTTTAATTTCTGCAGCGCCGCATCACCTGTCTCGCCCCTTCCGAGGTAA

Coding sequence (CDS)

ATGGGGGAGAAAAAAAGGAAAGAGAGGAATGGGGTTTCTCTCGCTTTTAGCATAGCGGGCCCCAACGGGAGGCCCACACGACGGGCTATTAGTTCAGTGGTAGAGCGCGCCCCTGATAATTGCGTCATTGTGCCTGAGCTGCGAAGCACTCAAAATGTTGTTCCTGTGCAAGCAAAGAAAGAAAGAGCAGTTGGTGAGCAACCCGGATTGGTTGCTCCGTTCATCTTTCCGGCGAAAAGGGATGAAAATCCGGCGACGAAGGAGCTTCGAATTAAGCCTCGGCGGCAATGGAATCTCCCGTCGATTCTTCTTCTTCTTTTGTTAGTTCGTTTTAATTTCTGCAGCGCCGCATCACCTGTCTCGCCCCTTCCGAGGTAA

Protein sequence

MGEKKRKERNGVSLAFSIAGPNGRPTRRAISSVVERAPDNCVIVPELRSTQNVVPVQAKKERAVGEQPGLVAPFIFPAKRDENPATKELRIKPRRQWNLPSILLLLLLVRFNFCSAASPVSPLPR
BLAST of Carg24704 vs. TrEMBL
Match: tr|A0A2N9HP93|A0A2N9HP93_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-11
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 4   KKRKERNGVSLAFSIAGPNGRPTRRAISSVVERAPDNCVIVPELR 49
           KK KER+GVSLAF IAGP GRP RRAISSVVERAPDNCV+VP LR
Sbjct: 320 KKGKERDGVSLAFGIAGPGGRPARRAISSVVERAPDNCVVVPGLR 364

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2N9HP93|A0A2N9HP93_FAGSY3.3e-1184.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24704-RACarg24704-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25